Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Forward (+)

32534451 .. 32534989

Gene Structure 539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG279400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCCCCACCTCTCCGACCCCAAAGCCATCGCCGCCATGACCCGTACCGTCTCCTACGTCGCCCAGACCAGCTCCGTCCTCAACGCCCTCAACGACCGTCCTGACCACGAGACCGTCGACACCACCAAGGCCAAGCTCGCCCACATTGAGTCCACTATCTCCAAGAAGCTCGAGGACCTCGTCCTCCCATCGCCGTTCCATCATTCACAATGCTTAGTCCCTCGAACTCGCCACTCGGCTGGCGGTCAGATAGCTCGTGCCGTCACTATTTTCCGAGTTGATGAGGTGGTGGTATTTGACAACAACAGTGAGTCTGGCTCTCCGGAAGCTAATAATTCCGATGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

116

Amino Acids

12.63

Weight (kDa)

5.8

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltrn_RNA_3	PF02598	73 - 114	2.6e-08	Putative RNA methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	2 cut(s)	33, 243
AfaI	GTAC	1 cut(s)	46
AluBI	AGCT	5 cut(s)	72, 136, 169, 254, 329
AluI	AGCT	5 cut(s)	72, 136, 169, 254, 329
Alw26I	GTCTC	2 cut(s)	55, 104
Ama87I	CYCGRG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	175
BauI	CACGAG	2 cut(s)	107, 255
BccI	CCATC	3 cut(s)	35, 196, 207
BceAI	ACGGC	2 cut(s)	178, 245
BcoDI	GTCTC	2 cut(s)	55, 104
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	322
BseAI	TCCGGA	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	203
BsmAI	GTCTC	2 cut(s)	55, 104
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	170
Bsp13I	TCCGGA	1 cut(s)	322
BspACI	CCGC	2 cut(s)	33, 243
BspANI	GGCC	1 cut(s)	131
BspEI	TCCGGA	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	126
BssSI	CACGAG	2 cut(s)	107, 255
BssT1I	CCWWGG	1 cut(s)	126
Bst2BI	CACGAG	2 cut(s)	107, 255
Bst4CI	ACNGT	4 cut(s)	49, 98, 115, 308
BstC8I	GCNNGC	2 cut(s)	138, 241
BstDEI	CTNAG	1 cut(s)	214
BstMAI	GTCTC	2 cut(s)	55, 104
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 137
BstXI	CCANNNNNNTGG	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	131
BtgZI	GCGATG	2 cut(s)	13, 174
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	138, 241
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	9 cut(s)	26, 72, 131, 136, 169, 239, 254, 318, 329
CviKI_1	RGCY	9 cut(s)	26, 72, 131, 136, 169, 239, 254, 318, 329
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	1 cut(s)	40
FaiI	YATR	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	1 cut(s)	323
Hin1II	CATG	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	149, 311
HpaII	CCGG	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	118, 153
Hpy188I	TCNGA	4 cut(s)	16, 249, 275, 340
Hpy188III	TCNNGA	2 cut(s)	101, 323
Hpy8I	GTNNAC	2 cut(s)	118, 153
Hpy99I	CGWCG	2 cut(s)	62, 119
HpyCH4III	ACNGT	4 cut(s)	49, 98, 115, 308
HpyCH4IV	ACGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 137
HpyF3I	CTNAG	1 cut(s)	214
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	322
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	6 cut(s)	77, 82, 114, 225, 300, 336
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	262
MluCI	AATT	2 cut(s)	334, 346
MlyI	GAGTC	2 cut(s)	158, 320
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	8 cut(s)	20, 89, 98, 166, 188, 194, 231, 277
MroI	TCCGGA	1 cut(s)	322
MseI	TTAA	1 cut(s)	349
MspI	CCGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	32, 137
NlaIII	CATG	1 cut(s)	40
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	262
PaeR7I	CTCGAG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 114, 177
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	2 cut(s)	157, 319
PpsI	GAGTC	2 cut(s)	157, 319
PpuMI	RGGWCCY	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
PspXI	VCTCGAGB	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	349
SatI	GCNGC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	2 cut(s)	158, 320
SetI	ASST	9 cut(s)	12, 60, 74, 138, 171, 180, 256, 288, 331
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	175
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	334, 346
SsiI	CCGC	2 cut(s)	33, 243
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	4 cut(s)	49, 98, 115, 308
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	3 cut(s)	117, 171, 223
TasI	AATT	2 cut(s)	334, 346
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	349
Tru9I	TTAA	1 cut(s)	349
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	313
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.