Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Reverse (-)

30832170 .. 30833849

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018499

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCTCCACCAACAGCCCCCGATCGCTCGGCTTCAACTCCCCAAGCATATCCGATAAGAAGAAATCCAAATCCGCCGTCAAAGACGACTCCAAAGCCGCAACTACAAGTTTCCGACGCCAAAGTCATCGCCGCCATGACCCGCGCCGTCTCCGACGTCACCCAGACCCTCTCCGTCTTCAACGCTCTCGGCGACCGTCCTGACCACGAGGCCTTCGACACCGCCAAGGCCAAGCTCGCCCACATCAAGCCCACTCCCTCCAAGAAGCTCGAGGACCTCGTCCTCTCCCCCCGCCCCTCTGACGTCGACCACTTCCAGTGGCGGGCCCACCTCCCCGAGCGCGAGCAGGATGTTGTTCTTGGTGCCTGGCTCAACTACTCAACTGCCCAACTTTTGCCCCATCAAGCTGCAACACAGTTTGGAGCAGCTAACCCTACCCCTAATGCAAGTCGCCATGCTGAGGCAAATGAGAATGCTATGAACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

163

Amino Acids

17.66

Weight (kDa)

7.95

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AatII	GACGTC	2 cut(s)	159, 306
AccB1I	GGYRCC	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	2 cut(s)	144, 342
AciI	CCGC	7 cut(s)	74, 98, 132, 142, 222, 292, 322
AcyI	GRCGYC	3 cut(s)	117, 156, 303
AfiI	CCNNNNNNNGG	2 cut(s)	322, 460
AgsI	TTSAA	2 cut(s)	36, 181
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	4 cut(s)	235, 268, 407, 428
AluI	AGCT	4 cut(s)	235, 268, 407, 428
Alw26I	GTCTC	2 cut(s)	9, 154
Ama87I	CYCGRG	2 cut(s)	269, 335
AoxI	GGCC	3 cut(s)	210, 228, 324
ApaI	GGGCCC	1 cut(s)	328
ApeKI	GCWGC	2 cut(s)	407, 425
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspLEI	GCGC	2 cut(s)	146, 342
AspS9I	GGNCC	3 cut(s)	274, 324, 325
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	2 cut(s)	269, 335
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	328
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	169
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	394, 437
BccI	CCATC	1 cut(s)	408
BceAI	ACGGC	2 cut(s)	61, 131
BciT130I	CCWGG	1 cut(s)	367
BcoDI	GTCTC	2 cut(s)	9, 154
BisI	GCNGC	4 cut(s)	98, 132, 408, 426
BlsI	GCNGC	4 cut(s)	99, 133, 409, 427
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	2 cut(s)	269, 335
BmgT120I	GGNCC	3 cut(s)	274, 324, 325
BmiI	GGNNCC	2 cut(s)	326, 364
BmrFI	CCNGG	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	459
BsaHI	GRCGYC	3 cut(s)	117, 156, 303
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 460
Bse1I	ACTGG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	322, 460
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	394, 437
Bsh1236I	CGCG	2 cut(s)	144, 342
Bsh1285I	CGRYCG	2 cut(s)	25, 196
BshFI	GGCC	3 cut(s)	212, 230, 326
BshNI	GGYRCC	1 cut(s)	362
BsiEI	CGRYCG	2 cut(s)	25, 196
BsiHKCI	CYCGRG	2 cut(s)	269, 335
BslI	CCNNNNNNNGG	2 cut(s)	322, 460
BsmAI	GTCTC	2 cut(s)	9, 154
BsmBI	CGTCTC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	3 cut(s)	212, 230, 326
BsoBI	CYCGRG	2 cut(s)	269, 335
Bsp120I	GGGCCC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	7 cut(s)	74, 98, 132, 142, 222, 292, 322
BspANI	GGCC	3 cut(s)	212, 230, 326
BspCNI	CTCAG	1 cut(s)	451
BspFNI	CGCG	2 cut(s)	144, 342
BspLI	GGNNCC	2 cut(s)	326, 364
BspT107I	GGYRCC	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	22
BssNI	GRCGYC	3 cut(s)	117, 156, 303
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	3 cut(s)	197, 417, 485
BstACI	GRCGYC	3 cut(s)	117, 156, 303
BstC8I	GCNNGC	3 cut(s)	237, 324, 344
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	2 cut(s)	144, 342
BstHHI	GCGC	2 cut(s)	146, 342
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	2 cut(s)	9, 154
BstMBI	GATC	1 cut(s)	22
BstMCI	CGRYCG	2 cut(s)	25, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstSLI	GKGCMC	1 cut(s)	328
BstUI	CGCG	2 cut(s)	144, 342
BstV1I	GCAGC	2 cut(s)	394, 437
BstV2I	GAAGAC	1 cut(s)	169
BsuRI	GGCC	3 cut(s)	212, 230, 326
BtgZI	GCGATG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	1 cut(s)	323
Cac8I	GCNNGC	3 cut(s)	237, 324, 344
CfoI	GCGC	2 cut(s)	146, 342
Cfr13I	GGNCC	3 cut(s)	274, 324, 325
CseI	GACGC	1 cut(s)	125
CviAII	CATG	2 cut(s)	136, 455
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	274
Eco88I	CYCGRG	2 cut(s)	269, 335
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	2 cut(s)	139, 458
FaiI	YATR	4 cut(s)	49, 137, 456, 479
FatI	CATG	2 cut(s)	135, 454
FauI	CCCGC	3 cut(s)	149, 299, 315
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	4 cut(s)	98, 132, 408, 426
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	4 cut(s)	98, 132, 408, 426
GlaI	GCGC	2 cut(s)	145, 341
GluI	GCNGC	4 cut(s)	98, 132, 408, 426
HaeIII	GGCC	3 cut(s)	212, 230, 326
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	146, 342
Hin1I	GRCGYC	3 cut(s)	117, 156, 303
Hin1II	CATG	2 cut(s)	139, 458
Hin6I	GCGC	2 cut(s)	144, 340
HinP1I	GCGC	2 cut(s)	144, 340
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	4 cut(s)	54, 115, 154, 301
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	3 cut(s)	119, 158, 308
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	197, 417, 485
HpyCH4IV	ACGT	2 cut(s)	156, 303
HpyCH4V	TGCA	2 cut(s)	410, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	2 cut(s)	156, 303
Hsp92I	GRCGYC	3 cut(s)	117, 156, 303
Hsp92II	CATG	2 cut(s)	139, 458
HspAI	GCGC	2 cut(s)	144, 340
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	422
LpnPI	CCDG	6 cut(s)	176, 213, 329, 332, 352, 379
Lsp1109I	GCAGC	2 cut(s)	394, 437
MaeII	ACGT	2 cut(s)	156, 303
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	2 cut(s)	72, 169
MhlI	GDGCHC	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	2 cut(s)	138, 177
MnlI	CCTC	9 cut(s)	179, 202, 265, 268, 287, 293, 307, 341, 454
MspR9I	CCNGG	1 cut(s)	367
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	2 cut(s)	144, 342
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	2 cut(s)	139, 458
NlaIV	GGNNCC	2 cut(s)	326, 364
NmeAIII	GCCGAG	2 cut(s)	8, 168
NmuCI	GTSAC	1 cut(s)	157
PaeR7I	CTCGAG	1 cut(s)	269
PceI	AGGCCT	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	3 cut(s)	189, 213, 276
PctI	GAATGC	1 cut(s)	478
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	4 cut(s)	99, 133, 409, 427
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	326, 364
PspOMI	GGGCCC	1 cut(s)	324
PspPI	GGNCC	3 cut(s)	274, 324, 325
PspPPI	RGGWCCY	1 cut(s)	274
PspXI	VCTCGAGB	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	278
PvuI	CGATCG	1 cut(s)	25
SalI	GTCGAC	1 cut(s)	305
SatI	GCNGC	4 cut(s)	98, 132, 408, 426
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	3 cut(s)	274, 324, 325
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	8 cut(s)	159, 237, 270, 279, 306, 333, 409, 430
Sfr274I	CTCGAG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	274
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SseBI	AGGCCT	1 cut(s)	212
SsiI	CCGC	7 cut(s)	74, 98, 132, 142, 222, 292, 322
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	3 cut(s)	197, 417, 485
TaiI	ACGT	2 cut(s)	159, 306
TaqI	TCGA	3 cut(s)	216, 270, 306
TauI	GCSGC	2 cut(s)	100, 134
TscAI	CASTG	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	407, 425
Tsp45I	GTSAC	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	323
Tth111I	GACNNNGTC	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	274
XhoI	CTCGAG	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	306
ZraI	GACGTC	2 cut(s)	157, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.