RLG00000019048

Putative RNA methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001144
Physical Location & Seq
Forward (+)
45512151 .. 45512698
548 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019048

Sequence Viewer

Length: 447 bp
ATGACCTGCGCCGTCTCCGACGTCGCCCAGACCCTCTCCGTCCTCAACGCCCTCGGCAACCGTCTTGACCATGAGGCCATTGATGCCGTCGACACCGCCAAGGCCAAGCTCGCCCACATCGAGTCCACTCTCTCCAAGAAGCTCGAGGACCTCGTCCTCACCCATATTGTTAACGGCGACTCACATAACAAAACCAACGAGAAGAAGAACAAGAAATCCAAAACCGACACAGCCACTGTGATTCCCACCGTCACCGTAGCCATCGCCGGTTCCATCATTCACAACGCTCAGTCCCTCGAACTCGCCACTCGGATAGCTCATGCCGTCACGATTTTCCGAGTTGATGAGGTGGTGGTATTTGACAACAACAGTGAGTCTGGCTCTCCGGAAGCGAATAATTCCGATAAGAATGAAAGCGAGGCTGGGGGAGTCTGGCCGGTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltrn_RNA_3

Protein Analysis

149

Amino Acids

15.8

Weight (kDa)

5.63

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltrn_RNA_3 PF02598 83 - 138 2.3e-12 Putative RNA methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
Acc36I ACCTGC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 90
AccIII TCCGGA 1 cut(s) 385
AciI CCGC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 434
AcyI GRCGYC 1 cut(s) 21
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 3 cut(s) 109, 142, 317
AluI AGCT 3 cut(s) 109, 142, 317
Alw26I GTCTC 1 cut(s) 19
AlwNI CAGNNNCTG 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 143
Aor13HI TCCGGA 1 cut(s) 385
AoxI GGCC 3 cut(s) 75, 102, 434
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 151, 244
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 148
BccI CCATC 2 cut(s) 269, 281
BceAI ACGGC 3 cut(s) 71, 190, 308
BcoDI GTCTC 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 271
BmsI GCATC 1 cut(s) 73
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 52, 99
BsaWI WCCGGW 1 cut(s) 385
Bse118I RCCGGY 2 cut(s) 266, 436
BseAI TCCGGA 1 cut(s) 385
BseDI CCNNGG 2 cut(s) 52, 99
BseMII CTCAG 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 422
BshFI GGCC 3 cut(s) 77, 104, 436
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 3 cut(s) 267, 386, 437
BslFI GGGAC 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 19
BsmBI CGTCTC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 3 cut(s) 77, 104, 436
BsoBI CYCGRG 1 cut(s) 143
Bsp13I TCCGGA 1 cut(s) 385
BspACI CCGC 1 cut(s) 96
BspANI GGCC 3 cut(s) 77, 104, 436
BspCNI CTCAG 1 cut(s) 301
BspEI TCCGGA 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 14
BsrFI RCCGGY 2 cut(s) 266, 436
BssAI RCCGGY 2 cut(s) 266, 436
BssECI CCNNGG 2 cut(s) 52, 99
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 99
Bst4CI ACNGT 5 cut(s) 62, 238, 250, 256, 371
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 288
BstHHI GCGC 1 cut(s) 11
BstMAI GTCTC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 83, 110
BsuRI GGCC 3 cut(s) 77, 104, 436
BtgZI GCGATG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 234, 376
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 236
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 2 cut(s) 266, 436
Cfr13I GGNCC 1 cut(s) 148
CviAII CATG 2 cut(s) 71, 320
DdeI CTNAG 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 2 cut(s) 74, 323
FaiI YATR 4 cut(s) 72, 165, 186, 321
FaqI GGGAC 1 cut(s) 277
FatI CATG 2 cut(s) 70, 319
FblI GTMKAC 1 cut(s) 90
GlaI GCGC 1 cut(s) 10
GsaI CCCAGC 1 cut(s) 426
HaeIII GGCC 3 cut(s) 77, 104, 436
HapII CCGG 3 cut(s) 267, 386, 437
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 74, 323
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 2 cut(s) 91, 172
HindII GTYRAC 2 cut(s) 91, 172
HinfI GANTC 5 cut(s) 122, 179, 241, 374, 429
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 3 cut(s) 267, 386, 437
HphI GGTGA 2 cut(s) 151, 244
Hpy166II GTNNAC 3 cut(s) 91, 126, 172
Hpy188I TCNGA 5 cut(s) 19, 312, 338, 403, 443
Hpy188III TCNNGA 3 cut(s) 65, 328, 386
Hpy8I GTNNAC 3 cut(s) 91, 126, 172
Hpy99I CGWCG 3 cut(s) 23, 26, 92
HpyCH4III ACNGT 5 cut(s) 62, 238, 250, 256, 371
HpyCH4IV ACGT 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 110
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 74, 323
HspAI GCGC 1 cut(s) 9
Kpn2I TCCGGA 1 cut(s) 385
KspAI GTTAAC 1 cut(s) 172
LpnPI CCDG 7 cut(s) 19, 41, 280, 363, 399, 408, 418
LweI GCATC 1 cut(s) 73
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 250, 325
MboII GAAGA 2 cut(s) 214, 217
MluCI AATT 1 cut(s) 397
MlyI GAGTC 4 cut(s) 131, 173, 383, 438
MmeI TCCRAC 1 cut(s) 42
MroI TCCGGA 1 cut(s) 385
MseI TTAA 1 cut(s) 171
MspI CCGG 3 cut(s) 267, 386, 437
MwoI GCNNNNNNNGC 2 cut(s) 83, 110
NlaIII CATG 2 cut(s) 74, 323
NlaIV GGNNCC 1 cut(s) 271
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 250, 325
PaeR7I CTCGAG 1 cut(s) 143
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 150
PfeI GAWTC 1 cut(s) 241
PflFI GACNNNGTC 1 cut(s) 152
PleI GAGTC 4 cut(s) 130, 173, 382, 437
PpsI GAGTC 4 cut(s) 130, 173, 382, 437
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
PspFI CCCAGC 1 cut(s) 422
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 148
PspPPI RGGWCCY 1 cut(s) 148
PspXI VCTCGAGB 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 152
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 171
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 4 cut(s) 131, 173, 383, 438
SetI ASST 7 cut(s) 8, 24, 111, 144, 153, 319, 351
SfaNI GCATC 1 cut(s) 73
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 1 cut(s) 148
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 397
SsiI CCGC 1 cut(s) 96
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 5 cut(s) 62, 238, 250, 256, 371
TaiI ACGT 1 cut(s) 24
TaqI TCGA 4 cut(s) 90, 120, 144, 297
TasI AATT 1 cut(s) 397
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 2 cut(s) 241, 376
TseFI GTSAC 2 cut(s) 250, 325
Tsp45I GTSAC 2 cut(s) 250, 325
TspDTI ATGAA 1 cut(s) 426
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 241, 376
Tth111I GACNNNGTC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 148
XhoI CTCGAG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 90
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.