Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Forward (+)

38845541 .. 38845975

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018876

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGACCTGCGCAGTCTCCGACGTCTCCCAGACCCTCTCTGTCCTCAACGCCCTTGGCTACCGTCCTGACCATGAGGCCTTCGACACCGCCAAGGCCAAGCTCGCCCACATCGAGTCCACTCTCTCCAAGAAGCTTGAGGACCTCGTCCTCACCCATATTGTTAACGGCGACTCGCATAACAAAACCAACGAGAAGAAGAATAAGAAATCCAAAACCGACACAGCCACCGTGATTACCACCGTCACCGTAGCCATCGCCGGTTCCATGATTCACAACTCTCAGTTCCTCGAACTCGCCACTCGGCTGCCGTCAGATAGCTCGTGCGGTCACGATTTTCTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

115

Amino Acids

12.31

Weight (kDa)

6.57

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
Acc16I	TGCGCA	1 cut(s)	10
Acc36I	ACCTGC	1 cut(s)	14
AciI	CCGC	2 cut(s)	87, 324
AcyI	GRCGYC	1 cut(s)	21
AluBI	AGCT	3 cut(s)	100, 133, 318
AluI	AGCT	3 cut(s)	100, 133, 318
Alw26I	GTCTC	2 cut(s)	19, 28
AoxI	GGCC	2 cut(s)	75, 93
ApeKI	GCWGC	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	142, 235
AvaII	GGWCC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	2 cut(s)	181, 292
BcoDI	GTCTC	2 cut(s)	19, 28
BfuAI	ACCTGC	1 cut(s)	14
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	52, 90
Bse118I	RCCGGY	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	52, 90
BseMII	CTCAG	2 cut(s)	293, 329
BseXI	GCAGC	1 cut(s)	291
BshFI	GGCC	2 cut(s)	77, 95
BsiSI	CCGG	1 cut(s)	258
BsmAI	GTCTC	2 cut(s)	19, 28
BsmBI	CGTCTC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	77, 95
BspACI	CCGC	2 cut(s)	87, 324
BspANI	GGCC	2 cut(s)	77, 95
BspCNI	CTCAG	2 cut(s)	292, 330
BspLI	GGNNCC	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	52, 90
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	319
BssT1I	CCWWGG	2 cut(s)	52, 90
Bst2BI	CACGAG	1 cut(s)	319
Bst4CI	ACNGT	4 cut(s)	62, 229, 241, 247
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	279, 338
BstHHI	GCGC	1 cut(s)	11
BstMAI	GTCTC	2 cut(s)	19, 28
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	77, 95
BtgZI	GCGATG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	139
CviAII	CATG	2 cut(s)	71, 265
CviJI	RGCY	9 cut(s)	57, 77, 95, 100, 133, 224, 251, 304, 318
CviKI_1	RGCY	9 cut(s)	57, 77, 95, 100, 133, 224, 251, 304, 318
DdeI	CTNAG	2 cut(s)	279, 338
Eco130I	CCWWGG	2 cut(s)	52, 90
Eco147I	AGGCCT	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	52, 90
ErhI	CCWWGG	2 cut(s)	52, 90
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	74, 268
FaiI	YATR	4 cut(s)	72, 156, 177, 266
FatI	CATG	2 cut(s)	70, 264
Fnu4HI	GCNGC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	305
FspI	TGCGCA	1 cut(s)	10
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	77, 95
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	74, 268
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	113, 170, 268
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	2 cut(s)	142, 235
Hpy166II	GTNNAC	2 cut(s)	117, 163
Hpy188I	TCNGA	3 cut(s)	19, 313, 339
Hpy188III	TCNNGA	2 cut(s)	65, 329
Hpy8I	GTNNAC	2 cut(s)	117, 163
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	4 cut(s)	62, 229, 241, 247
HpyCH4IV	ACGT	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	2 cut(s)	279, 338
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	74, 268
HspAI	GCGC	1 cut(s)	9
KspAI	GTTAAC	1 cut(s)	163
LpnPI	CCDG	4 cut(s)	19, 41, 78, 271
Lsp1109I	GCAGC	1 cut(s)	291
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	241, 326
MboII	GAAGA	2 cut(s)	205, 208
MlyI	GAGTC	2 cut(s)	122, 164
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	7 cut(s)	44, 53, 67, 130, 152, 158, 296
MseI	TTAA	1 cut(s)	162
MspI	CCGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	101
NlaIII	CATG	2 cut(s)	74, 268
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	2 cut(s)	241, 326
NsbI	TGCGCA	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	268
PflFI	GACNNNGTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	306
PleI	GAGTC	2 cut(s)	121, 164
PpsI	GAGTC	2 cut(s)	121, 164
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
PsyI	GACNNNGTC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	305
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	2 cut(s)	122, 164
SetI	ASST	6 cut(s)	8, 24, 102, 135, 144, 320
SinI	GGWCC	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	2 cut(s)	87, 324
StuI	AGGCCT	1 cut(s)	77
StyI	CCWWGG	2 cut(s)	52, 90
TaaI	ACNGT	4 cut(s)	62, 229, 241, 247
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	3 cut(s)	81, 111, 288
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseFI	GTSAC	2 cut(s)	241, 326
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	2 cut(s)	241, 326
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	139
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.