Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Forward (+)

29214081 .. 29216153

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0296600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCCAAAGCAGGTCTCTCTTGACTGTCGCATCCTATTGCTCTTCCCTGTTGCATTGGCTTCTCTGCTTGTCCTTGGGACTGCCCGACTATTCCTGGACACATTGAAGAGCAACCACAGTTTTGTGTTTCAGCTATATGGCAGGTCAAGAGGTCAAGGAGAGAGACCAGCAGTGCTTGTTTCCCCTGAGGACCGCATTGATGAAAGTCGCAATGTTTTTGAAGGAAAATGGGTATGGGATAACGAGTCCTATCCTCCTCACTATACAGAAGAGAGCTGCCCCTACTTGTTGAAACAGGTTACATGCCAAAAGAATGGTAGGCCTGATTCTTACTACAAGAATTGGAGATGGCAACCCAATGACTGCAACCTCCCCAGGAGTTCGATGCCTCCATTGAGTAGTACTGGGCTCCCTTTATTGTGGAGTCAATTTCGGATCATGCAACGAAGCACTGTACTAAAACGGTTGGTGAAGCTCGACTCCATAGCTAAGCATGGCAAGCACTGGGAAGGAGTAGATATTTTGGTGTTTGAGAGCTATGTATGGTGGATGCACAAGCCTACAATCAATGCTACATATGGATCTCCAAACGATGTCCAAGAATATAATGTCACTACTGCGTATAAATTGGCATTACAGACTTGGGCAGAATGGAGCTGGGAATGGAGGCCTGGCAGTGATGAAAACTGCTACAATGAGTCCCATCCAATTCAAGGTTCATATTGGGGTACTGATTCGAACACCAAAATCATGGATATGATAGATGACACGTTACAGGATTTGAAAGTTAAGGTTACATTTTTGAATATCACACAATTGTCTGAGTACAGAAAAGATGCACACACATCAGTTTATGGGGAACGCAAGGGCAAGCTCCTGACAAAGGAACAAAAATCTGATCCAAAAAACTTCGCAGATTGCATTCACTGGTGCTTACCTGGAGTTCCAGATACATGGAACGAAATTTTGTACGCACATTTGTTAAAGAGTCATCAAATTTTTTGTAACTTGAAGTTAGCAGTTGAGTCTTTGCTAAACTACAATGATGCAAGAAAGAAGAAGAACAAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

357

Amino Acids

41.57

Weight (kDa)

8.28

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	71 - 123	1.5e-19	PMR5 N terminal Domain
PC-Esterase	PF13839	145 - 219	1.9e-10	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
PC-Esterase	PF13839	221 - 325	1.4e-29	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	3 cut(s)	443, 589, 893
AcsI	RAATTY	2 cut(s)	963, 996
AfaI	GTAC	5 cut(s)	403, 456, 730, 827, 971
AfiI	CCNNNNNNNGG	2 cut(s)	713, 883
AflIII	ACRYGT	1 cut(s)	768
AgsI	TTSAA	7 cut(s)	106, 221, 292, 713, 784, 805, 1012
AjnI	CCWGG	4 cut(s)	93, 374, 670, 937
AjuI	GAANNNNNNNTTGG	2 cut(s)	700, 732
AluBI	AGCT	7 cut(s)	133, 276, 475, 488, 537, 657, 874
AluI	AGCT	7 cut(s)	133, 276, 475, 488, 537, 657, 874
Alw26I	GTCTC	2 cut(s)	19, 157
AlwI	GGATC	3 cut(s)	443, 589, 893
AoxI	GGCC	2 cut(s)	320, 668
ApeKI	GCWGC	1 cut(s)	276
ApoI	RAATTY	2 cut(s)	963, 996
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	481
AsuII	TTCGAA	1 cut(s)	737
AvaII	GGWCC	1 cut(s)	190
AxyI	CCTNAGG	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	2 cut(s)	342, 711
BciT130I	CCWGG	4 cut(s)	95, 376, 672, 939
BcoDI	GTCTC	2 cut(s)	19, 157
BfuAI	ACCTGC	1 cut(s)	132
BisI	GCNGC	1 cut(s)	277
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	278
BmcAI	AGTACT	1 cut(s)	403
Bme1390I	CCNGG	4 cut(s)	95, 376, 672, 939
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	410
BmrFI	CCNGG	4 cut(s)	95, 376, 672, 939
BmrI	ACTGGG	2 cut(s)	414, 514
BmsI	GCATC	5 cut(s)	39, 375, 540, 826, 1036
BmuI	ACTGGG	2 cut(s)	414, 514
BpmI	CTGGAG	1 cut(s)	960
Bpu1102I	GCTNAGC	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	737
BsaI	GGTCTC	2 cut(s)	19, 157
BsaJI	CCNNGG	2 cut(s)	73, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	713, 883
Bse1I	ACTGG	3 cut(s)	409, 509, 932
Bse21I	CCTNAGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	217
BseBI	CCWGG	4 cut(s)	95, 376, 672, 939
BseDI	CCNNGG	2 cut(s)	73, 374
BseGI	GGATG	3 cut(s)	30, 555, 703
BseLI	CCNNNNNNNGG	2 cut(s)	713, 883
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	177, 813
BseNI	ACTGG	3 cut(s)	409, 509, 932
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	657
BshFI	GGCC	2 cut(s)	322, 670
BslFI	GGGAC	2 cut(s)	91, 685
BslI	CCNNNNNNNGG	2 cut(s)	713, 883
BsmAI	GTCTC	2 cut(s)	19, 157
BsmFI	GGGAC	2 cut(s)	91, 685
BsmI	GAATGC	1 cut(s)	921
BsnI	GGCC	2 cut(s)	322, 670
Bso31I	GGTCTC	2 cut(s)	19, 157
Bsp119I	TTCGAA	1 cut(s)	737
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	3 cut(s)	435, 581, 898
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	2 cut(s)	322, 670
BspCNI	CTCAG	2 cut(s)	178, 814
BspLI	GGNNCC	1 cut(s)	410
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	3 cut(s)	443, 589, 893
BspQI	GCTCTTC	2 cut(s)	47, 101
BspT104I	TTCGAA	1 cut(s)	737
BspTNI	GGTCTC	2 cut(s)	19, 157
BsrDI	GCAATG	1 cut(s)	217
BsrI	ACTGG	3 cut(s)	409, 509, 932
BssECI	CCNNGG	2 cut(s)	73, 374
BssMI	GATC	3 cut(s)	435, 581, 898
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	4 cut(s)	95, 376, 672, 939
Bst4CI	ACNGT	4 cut(s)	26, 119, 454, 465
Bst6I	CTCTTC	3 cut(s)	47, 101, 264
BstBI	TTCGAA	1 cut(s)	737
BstC8I	GCNNGC	2 cut(s)	500, 872
BstDEI	CTNAG	3 cut(s)	186, 489, 822
BstENI	CCTNNNNNAGG	1 cut(s)	881
BstF5I	GGATG	3 cut(s)	30, 555, 703
BstKTI	GATC	3 cut(s)	438, 584, 901
BstMAI	GTCTC	2 cut(s)	19, 157
BstMBI	GATC	3 cut(s)	435, 581, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	499
BstNI	CCWGG	4 cut(s)	95, 376, 672, 939
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	4 cut(s)	93, 374, 670, 937
BstV1I	GCAGC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	581
BstXI	CCANNNNNNTGG	3 cut(s)	314, 751, 954
BstYI	RGATCY	1 cut(s)	581
Bsu36I	CCTNAGG	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	322, 670
BtsCI	GGATG	3 cut(s)	30, 555, 703
BtsI	GCAGTG	2 cut(s)	177, 682
BtsIMutI	CAGTG	5 cut(s)	177, 450, 502, 682, 925
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	500, 872
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	5 cut(s)	402, 455, 729, 826, 970
CviAII	CATG	5 cut(s)	303, 439, 494, 751, 954
CviQI	GTAC	5 cut(s)	402, 455, 729, 826, 970
DdeI	CTNAG	3 cut(s)	186, 489, 822
DpnI	GATC	3 cut(s)	437, 583, 900
DpnII	GATC	3 cut(s)	435, 581, 898
Eam1104I	CTCTTC	3 cut(s)	47, 101, 264
EarI	CTCTTC	3 cut(s)	47, 101, 264
Eco130I	CCWWGG	1 cut(s)	73
Eco147I	AGGCCT	2 cut(s)	322, 670
Eco24I	GRGCYC	1 cut(s)	411
Eco31I	GGTCTC	2 cut(s)	19, 157
Eco47I	GGWCC	1 cut(s)	190
Eco81I	CCTNAGG	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	881
EcoRII	CCWGG	4 cut(s)	93, 374, 670, 937
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	5 cut(s)	306, 442, 497, 754, 957
FaqI	GGGAC	2 cut(s)	91, 685
FatI	CATG	5 cut(s)	302, 438, 493, 750, 953
FauNDI	CATATG	1 cut(s)	577
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	3 cut(s)	17, 562, 690
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	277
GsaI	CCCAGC	1 cut(s)	661
GsuI	CTGGAG	1 cut(s)	960
HaeIII	GGCC	2 cut(s)	322, 670
Hin1II	CATG	5 cut(s)	306, 442, 497, 754, 957
HinfI	GANTC	8 cut(s)	245, 326, 424, 479, 698, 734, 988, 1025
HphI	GGTGA	1 cut(s)	481
Hpy188I	TCNGA	3 cut(s)	435, 823, 898
Hpy188III	TCNNGA	4 cut(s)	20, 147, 877, 947
HpyAV	CCTTC	2 cut(s)	215, 503
HpyCH4III	ACNGT	4 cut(s)	26, 119, 454, 465
HpyCH4IV	ACGT	1 cut(s)	770
HpyCH4V	TGCA	7 cut(s)	53, 366, 442, 553, 839, 921, 1049
HpyF10VI	GCNNNNNNNGC	1 cut(s)	499
HpyF3I	CTNAG	3 cut(s)	186, 489, 822
HpySE526I	ACGT	1 cut(s)	770
Hsp92II	CATG	5 cut(s)	306, 442, 497, 754, 957
Kzo9I	GATC	3 cut(s)	435, 581, 898
LguI	GCTCTTC	2 cut(s)	47, 101
LmnI	GCTCC	3 cut(s)	414, 654, 879
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	5 cut(s)	39, 375, 540, 826, 1036
MaeII	ACGT	1 cut(s)	770
MaeIII	GTNAC	5 cut(s)	298, 610, 771, 793, 1004
MalI	GATC	3 cut(s)	437, 583, 900
MboI	GATC	3 cut(s)	435, 581, 898
MboII	GAAGA	5 cut(s)	34, 118, 281, 1069, 1072
MfeI	CAATTG	1 cut(s)	815
MflI	RGATCY	1 cut(s)	581
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	7 cut(s)	340, 428, 626, 708, 815, 963, 996
MlyI	GAGTC	6 cut(s)	254, 433, 473, 707, 997, 1034
MnlI	CCTC	7 cut(s)	143, 181, 264, 267, 380, 399, 660
MseI	TTAA	2 cut(s)	789, 983
MslI	CAYNNNNRTG	1 cut(s)	755
MspR9I	CCNGG	4 cut(s)	95, 376, 672, 939
MunI	CAATTG	1 cut(s)	815
Mva1269I	GAATGC	1 cut(s)	921
MvaI	CCWGG	4 cut(s)	95, 376, 672, 939
MwoI	GCNNNNNNNGC	1 cut(s)	499
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	3 cut(s)	435, 581, 898
NlaIII	CATG	5 cut(s)	306, 442, 497, 754, 957
NlaIV	GGNNCC	1 cut(s)	410
NmuCI	GTSAC	1 cut(s)	610
NspI	RCATGY	1 cut(s)	306
NspV	TTCGAA	1 cut(s)	737
PceI	AGGCCT	2 cut(s)	322, 670
PciSI	GCTCTTC	2 cut(s)	47, 101
PctI	GAATGC	1 cut(s)	921
PfeI	GAWTC	2 cut(s)	326, 734
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	6 cut(s)	253, 432, 473, 706, 996, 1033
PpsI	GAGTC	6 cut(s)	253, 432, 473, 706, 996, 1033
Psp6I	CCWGG	4 cut(s)	93, 374, 670, 937
PspFI	CCCAGC	1 cut(s)	657
PspGI	CCWGG	4 cut(s)	93, 374, 670, 937
PspN4I	GGNNCC	1 cut(s)	410
PspPI	GGNCC	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	581
RsaI	GTAC	5 cut(s)	403, 456, 730, 827, 971
RsaNI	GTAC	5 cut(s)	402, 455, 729, 826, 970
RseI	CAYNNNNRTG	1 cut(s)	755
SapI	GCTCTTC	2 cut(s)	47, 101
SaqAI	TTAA	2 cut(s)	789, 983
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	3 cut(s)	435, 581, 898
Sau96I	GGNCC	1 cut(s)	190
ScaI	AGTACT	1 cut(s)	403
SchI	GAGTC	6 cut(s)	254, 433, 473, 707, 997, 1034
ScrFI	CCNGG	4 cut(s)	95, 376, 672, 939
SduI	GDGCHC	1 cut(s)	411
SfaNI	GCATC	5 cut(s)	39, 375, 540, 826, 1036
SfuI	TTCGAA	1 cut(s)	737
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	755
Sse9I	AATT	7 cut(s)	340, 428, 626, 708, 815, 963, 996
SseBI	AGGCCT	2 cut(s)	322, 670
SsiI	CCGC	1 cut(s)	193
StuI	AGGCCT	2 cut(s)	322, 670
StyD4I	CCNGG	4 cut(s)	93, 374, 670, 937
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	4 cut(s)	26, 119, 454, 465
TaiI	ACGT	1 cut(s)	773
TaqI	TCGA	3 cut(s)	383, 477, 737
TasI	AATT	7 cut(s)	340, 428, 626, 708, 815, 963, 996
TatI	WGTACW	3 cut(s)	401, 454, 825
TfiI	GAWTC	2 cut(s)	326, 734
Tru1I	TTAA	2 cut(s)	789, 983
Tru9I	TTAA	2 cut(s)	789, 983
TscAI	CASTG	5 cut(s)	177, 457, 509, 682, 932
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	1 cut(s)	276
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	3 cut(s)	216, 696, 708
TspRI	CASTG	5 cut(s)	177, 457, 509, 682, 932
VpaK11BI	GGWCC	1 cut(s)	190
XagI	CCTNNNNNAGG	1 cut(s)	881
XapI	RAATTY	2 cut(s)	963, 996
XceI	RCATGY	1 cut(s)	306
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.