AT5G05850

Plant intracellular Ras-group-related LRR protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
1762405 .. 1764774
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05850.1

Sequence Viewer

Length: 1521 bp
ATGGCGACGGAGCTTAACCCTAAGAACTTCCCTGTTCTCTCTTATGTCTTGGATCGTCTCCCTTCATTCACCGCCAAATCCTCTTCCTCTTCCGATGTCGAGCCACCACCATCCAAATCCGATCCTTCTTCATCATCAAACCACTCTATCGAGATAGTGACTCAGATGCCTCACTTGGCTCATCCTGATGTTCTTGCCTCCATGACTAACGCAACCGCCGACGTTTCTCAGACCCGATCTGTTCTTCGAACCCTAGGACCAAGACCCGATCACGAAACCGTCGACAGAGCTCGTGCTAGGCTCCGTGAGATCGACGCGTCTTTGTCGGAATCTTTCGAAGAGATCGCTCTCTCTCCTAACGATATTGACGTGGCGGAGAAGGAACAGAAGAGGAGAGAAGCTGTGGAGCAAGAGAAGATTTGGTATAAATCGATCCTTAAGCTTAACGAGCTTCATGAATCTTATGAGAAGCTTTTGAAAGAAGCAGAGGAGAGGCTCGTGAGGATCTATGAGTCTGCCGAGAAGAATGCTGCCGCGGTGGCGGAGGAGGAAGCTGCGGAGGTTGAAGTCAATGAAGAGGTTGTGAGTATACTGCAACAAGCTGCGGAGAATCCATTGGACCGAGTTGATTTGTCTGGTCGGAAATTGAAGTTGCTTCCTGAAGCATTTGGAAAGATTCAAGGTCTCCTTGTTCTTAATCTCTATAACAATCAGCTTCAGGCTATTCCTGATTCGATAGCTGGTTTGCATAACCTTCTCGAACTCGATGTTTCCACTAATTTCCTGGAGACATTACCAGATTCGATCGGTTTATTGTCAAAGTTGAAGATTTTGAATGTCTCTTGTAACAAACTCACAACTTTACCAGATTCCATCTGCCATTGTGGATCGTTGGTTGTCTTGGATGCGAGCTACAACAATCTCACCTACTTACCAACAAACATCGGATTCGAGCTAGTGAAACTAGAGAAGCTCTTGATCCATCTCAACAAAATCAGATCATTACCAACTTCCATTGGTGAAATGAGATCCTTACGCTACCTCGATGCACACTTCAACGAACTCAATGGTCTCCCAAATTCTTTCGGGCTGCTCACGAACCTCGAGTACCTTAACCTGAGCAGTAACTTCAGCGATCTCCAAGATCTCCCTGCTTCATTCGGAGATCTCATAAGCCTCCAAGAACTCGACTTGAGCAACAACCAGATCCATTCTCTTCCAGACGCTTTTGGCACGCTCGTGAACTTGACCAAACTGAACTTGGACCAAAACCCGCTTGTTGTCCCGCCTGATGAAGTCGTGAAACAAGGTGTGGATGCGGTTAAAATGTATATGGGTAAGAGATGGGTCAGCATGTTGGAAGAGGAAGAGAAGATGGCGAATATGAAGGATGAGATGGATCAGACAAACACCGATTGGCTCACCCGAACCACCTCGAAGCTGAAAACGTATGTTACTGAGGTCTCGGAGTATCTTGGCTCGAATCCGCCTAGAGATCCTTACCTTGACCAGCAGCTATGA

Protein Analysis

506

Amino Acids

56.58

Weight (kDa)

4.78

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 216 - 260 1.1e-06 Leucine rich repeat
LRR_8 PF13855 251 - 308 2.3e-08 Leucine rich repeat
LRR_14 PF23598 305 - 375 4.7e-07 Leucine-rich repeat region
LRR_8 PF13855 321 - 376 3.3e-06 Leucine rich repeat
LRR_14 PF23598 363 - 424 1.2e-07 Leucine-rich repeat region
LRR_8 PF13855 384 - 426 3.4e-09 Leucine rich repeat
LRR_4 PF12799 392 - 425 1.6e-07 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 282, 589
AccII CGCG 2 cut(s) 317, 536
AcsI RAATTY 1 cut(s) 1078
AcuI CTGAAG 3 cut(s) 681, 701, 1114
AfaI GTAC 1 cut(s) 1109
AflII CTTAAG 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 7 cut(s) 478, 566, 649, 680, 826, 835, 1057
AjiI CACGTC 1 cut(s) 370
AjnI CCWGG 1 cut(s) 783
AleI CACNNNNGTG 1 cut(s) 1238
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 6 cut(s) 62, 689, 782, 844, 1076, 1468
Ama87I CYCGRG 1 cut(s) 1103
ApeKI GCWGC 5 cut(s) 530, 554, 602, 1090, 1513
ApoI RAATTY 1 cut(s) 1078
AspA2I CCTAGG 1 cut(s) 253
AspS9I GGNCC 3 cut(s) 257, 619, 1264
AsuHPI GGTGA 4 cut(s) 61, 916, 1031, 1414
AsuII TTCGAA 2 cut(s) 247, 336
AvaI CYCGRG 1 cut(s) 1103
AvaII GGWCC 3 cut(s) 257, 619, 1264
AvrII CCTAGG 1 cut(s) 253
BanII GRGCYC 1 cut(s) 292
BauI CACGAG 3 cut(s) 291, 497, 1238
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 4 cut(s) 517, 541, 589, 1077
BccI CCATC 6 cut(s) 118, 881, 990, 1338, 1369, 1390
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 1 cut(s) 785
BcoDI GTCTC 6 cut(s) 62, 689, 782, 844, 1076, 1468
BfaI CTAG 5 cut(s) 254, 297, 956, 965, 1491
BfrI CTTAAG 1 cut(s) 437
BglI GCCNNNNNGGC 1 cut(s) 539
BglII AGATCT 2 cut(s) 1144, 1165
BisI GCNGC 6 cut(s) 531, 534, 555, 603, 1091, 1514
BlnI CCTAGG 1 cut(s) 253
BlsI GCNGC 6 cut(s) 532, 535, 556, 604, 1092, 1515
Bme1390I CCNGG 1 cut(s) 785
Bme18I GGWCC 3 cut(s) 257, 619, 1264
BmeT110I CYCGRG 1 cut(s) 1103
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 3 cut(s) 257, 619, 1264
BmiI GGNNCC 1 cut(s) 302
BmrFI CCNGG 1 cut(s) 785
BmsI GCATC 4 cut(s) 156, 895, 1036, 1306
BpmI CTGGAG 1 cut(s) 806
Bpu10I CCTNAGC 1 cut(s) 1118
Bpu14I TTCGAA 2 cut(s) 247, 336
BpuEI CTTGAG 1 cut(s) 1213
Bsa29I ATCGAT 1 cut(s) 431
BsaI GGTCTC 3 cut(s) 689, 1076, 1468
BsaJI CCNNGG 2 cut(s) 253, 534
BseBI CCWGG 1 cut(s) 785
BseCI ATCGAT 1 cut(s) 431
BseDI CCNNGG 2 cut(s) 253, 534
BseGI GGATG 5 cut(s) 110, 181, 910, 1321, 1396
BseMII CTCAG 4 cut(s) 176, 242, 1109, 1449
BseRI GAGGAG 3 cut(s) 406, 503, 560
BseXI GCAGC 4 cut(s) 517, 541, 589, 1077
Bsh1236I CGCG 2 cut(s) 317, 536
Bsh1285I CGRYCG 1 cut(s) 807
BshVI ATCGAT 1 cut(s) 431
BsiEI CGRYCG 1 cut(s) 807
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 1103
BslFI GGGAC 1 cut(s) 1268
BsmAI GTCTC 6 cut(s) 62, 689, 782, 844, 1076, 1468
BsmBI CGTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 1268
BsmI GAATGC 1 cut(s) 532
Bso31I GGTCTC 3 cut(s) 689, 1076, 1468
BsoBI CYCGRG 1 cut(s) 1103
Bsp119I TTCGAA 2 cut(s) 247, 336
Bsp1286I GDGCHC 1 cut(s) 292
BspCNI CTCAG 4 cut(s) 175, 241, 1110, 1450
BspDI ATCGAT 1 cut(s) 431
BspFNI CGCG 2 cut(s) 317, 536
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 302
BspT104I TTCGAA 2 cut(s) 247, 336
BspTI CTTAAG 1 cut(s) 437
BspTNI GGTCTC 3 cut(s) 689, 1076, 1468
BssECI CCNNGG 2 cut(s) 253, 534
BssNAI GTATAC 1 cut(s) 590
BssSI CACGAG 3 cut(s) 291, 497, 1238
BssT1I CCWWGG 1 cut(s) 253
Bst1107I GTATAC 1 cut(s) 590
Bst2BI CACGAG 3 cut(s) 291, 497, 1238
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 8 cut(s) 88, 94, 333, 383, 570, 1221, 1356, 1362
BstAFI CTTAAG 1 cut(s) 437
BstBI TTCGAA 2 cut(s) 247, 336
BstC8I GCNNGC 2 cut(s) 910, 1235
BstDEI CTNAG 5 cut(s) 21, 162, 228, 1118, 1458
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 5 cut(s) 110, 181, 910, 1321, 1396
BstFNI CGCG 2 cut(s) 317, 536
BstMAI GTCTC 6 cut(s) 62, 689, 782, 844, 1076, 1468
BstMCI CGRYCG 1 cut(s) 807
BstMWI GCNNNNNNNGC 2 cut(s) 448, 539
BstNI CCWGG 1 cut(s) 785
BstNSI RCATGY 1 cut(s) 1357
BstSCI CCNGG 1 cut(s) 783
BstUI CGCG 2 cut(s) 317, 536
BstV1I GCAGC 4 cut(s) 517, 541, 589, 1077
BstX2I RGATCY 6 cut(s) 504, 1028, 1144, 1165, 1206, 1495
BstYI RGATCY 6 cut(s) 504, 1028, 1144, 1165, 1206, 1495
BstZ17I GTATAC 1 cut(s) 590
Bsu15I ATCGAT 1 cut(s) 431
BsuTUI ATCGAT 1 cut(s) 431
BtgI CCRYGG 1 cut(s) 534
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 5 cut(s) 110, 181, 910, 1321, 1396
Cac8I GCNNGC 2 cut(s) 910, 1235
CciI TCATGA 1 cut(s) 454
Cfr13I GGNCC 3 cut(s) 257, 619, 1264
Cfr42I CCGCGG 1 cut(s) 537
ClaI ATCGAT 1 cut(s) 431
CseI GACGC 3 cut(s) 306, 323, 1232
Csp6I GTAC 1 cut(s) 1108
CviAII CATG 3 cut(s) 202, 455, 1354
CviQI GTAC 1 cut(s) 1108
DdeI CTNAG 5 cut(s) 21, 162, 228, 1118, 1458
Eam1104I CTCTTC 8 cut(s) 88, 94, 333, 383, 570, 1221, 1356, 1362
EarI CTCTTC 8 cut(s) 88, 94, 333, 383, 570, 1221, 1356, 1362
EciI GGCGGA 3 cut(s) 389, 557, 1476
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 292
Eco31I GGTCTC 3 cut(s) 689, 1076, 1468
Eco47I GGWCC 3 cut(s) 257, 619, 1264
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 3 cut(s) 681, 701, 1114
Eco88I CYCGRG 1 cut(s) 1103
EcoICRI GAGCTC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 783
EcoT14I CCWWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 3 cut(s) 205, 458, 1357
FalI AAGNNNNNCTT 2 cut(s) 672, 704
FaqI GGGAC 1 cut(s) 1268
FatI CATG 3 cut(s) 201, 454, 1353
FauI CCCGC 2 cut(s) 1281, 1293
FblI GTMKAC 2 cut(s) 282, 589
Fnu4HI GCNGC 6 cut(s) 531, 534, 555, 603, 1091, 1514
FokI GGATG 5 cut(s) 97, 168, 917, 1328, 1403
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 6 cut(s) 531, 534, 555, 603, 1091, 1514
FspBI CTAG 5 cut(s) 254, 297, 956, 965, 1491
GluI GCNGC 6 cut(s) 531, 534, 555, 603, 1091, 1514
GsuI CTGGAG 1 cut(s) 806
HgaI GACGC 3 cut(s) 306, 323, 1232
Hin1II CATG 3 cut(s) 205, 458, 1357
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 2 cut(s) 440, 470
HphI GGTGA 4 cut(s) 61, 916, 1031, 1414
Hpy166II GTNNAC 3 cut(s) 283, 590, 1243
Hpy8I GTNNAC 3 cut(s) 283, 590, 1243
Hpy99I CGWCG 4 cut(s) 10, 224, 284, 317
HpyAV CCTTC 5 cut(s) 72, 135, 373, 764, 1381
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 3 cut(s) 222, 369, 1448
HpyCH4V TGCA 3 cut(s) 595, 748, 1049
HpyF10VI GCNNNNNNNGC 2 cut(s) 448, 539
HpyF3I CTNAG 5 cut(s) 21, 162, 228, 1118, 1458
HpySE526I ACGT 3 cut(s) 222, 369, 1448
Hsp92II CATG 3 cut(s) 205, 458, 1357
KspI CCGCGG 1 cut(s) 537
LmnI GCTCC 3 cut(s) 10, 306, 406
Lsp1109I GCAGC 4 cut(s) 517, 541, 589, 1077
LweI GCATC 4 cut(s) 156, 895, 1036, 1306
MaeI CTAG 5 cut(s) 254, 297, 956, 965, 1491
MaeII ACGT 3 cut(s) 222, 369, 1448
MaeIII GTNAC 4 cut(s) 157, 845, 1124, 1453
MflI RGATCY 6 cut(s) 504, 1028, 1144, 1165, 1206, 1495
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 3 cut(s) 644, 778, 1078
MluI ACGCGT 1 cut(s) 315
MlyI GAGTC 2 cut(s) 154, 521
MmeI TCCRAC 3 cut(s) 306, 620, 1338
MseI TTAA 6 cut(s) 15, 438, 444, 696, 1113, 1323
MslI CAYNNNNRTG 2 cut(s) 186, 1238
MspA1I CMGCKG 1 cut(s) 536
MspCI CTTAAG 1 cut(s) 437
MspR9I CCNGG 1 cut(s) 785
Mva1269I GAATGC 1 cut(s) 532
MvaI CCWGG 1 cut(s) 785
MvnI CGCG 2 cut(s) 317, 536
MwoI GCNNNNNNNGC 2 cut(s) 448, 539
NlaIII CATG 3 cut(s) 205, 458, 1357
NlaIV GGNNCC 1 cut(s) 302
NmeAIII GCCGAG 1 cut(s) 544
NmuCI GTSAC 1 cut(s) 157
NspI RCATGY 1 cut(s) 1357
NspV TTCGAA 2 cut(s) 247, 336
OliI CACNNNNGTG 1 cut(s) 1238
PaeR7I CTCGAG 1 cut(s) 1103
PagI TCATGA 1 cut(s) 454
PcsI WCGNNNNNNNCGW 3 cut(s) 216, 279, 366
PctI GAATGC 1 cut(s) 532
PfeI GAWTC 9 cut(s) 329, 458, 610, 676, 731, 800, 869, 948, 1483
PfoI TCCNGGA 1 cut(s) 783
PkrI GCNGC 6 cut(s) 532, 535, 556, 604, 1092, 1515
Ple19I CGATCG 1 cut(s) 807
PleI GAGTC 2 cut(s) 154, 520
PpsI GAGTC 2 cut(s) 154, 520
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 783
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 1 cut(s) 302
PspPI GGNCC 3 cut(s) 257, 619, 1264
PspXI VCTCGAGB 1 cut(s) 1103
PsrI GAACNNNNNNTAC 2 cut(s) 1091, 1123
PsuI RGATCY 6 cut(s) 504, 1028, 1144, 1165, 1206, 1495
PvuI CGATCG 1 cut(s) 807
RsaI GTAC 1 cut(s) 1109
RsaNI GTAC 1 cut(s) 1108
RseI CAYNNNNRTG 2 cut(s) 186, 1238
SacI GAGCTC 1 cut(s) 292
SacII CCGCGG 1 cut(s) 537
SalI GTCGAC 1 cut(s) 281
SaqAI TTAA 6 cut(s) 15, 438, 444, 696, 1113, 1323
SatI GCNGC 6 cut(s) 531, 534, 555, 603, 1091, 1514
Sau96I GGNCC 3 cut(s) 257, 619, 1264
SchI GAGTC 2 cut(s) 154, 521
ScrFI CCNGG 1 cut(s) 785
SduI GDGCHC 1 cut(s) 292
SfaNI GCATC 4 cut(s) 156, 895, 1036, 1306
Sfr274I CTCGAG 1 cut(s) 1103
Sfr303I CCGCGG 1 cut(s) 537
SfuI TTCGAA 2 cut(s) 247, 336
SgrBI CCGCGG 1 cut(s) 537
SinI GGWCC 3 cut(s) 257, 619, 1264
SlaI CTCGAG 1 cut(s) 1103
SmiMI CAYNNNNRTG 2 cut(s) 186, 1238
SmlI CTYRAG 3 cut(s) 437, 1103, 1192
SmoI CTYRAG 3 cut(s) 437, 1103, 1192
Sse9I AATT 3 cut(s) 644, 778, 1078
SspMI CTAG 5 cut(s) 254, 297, 956, 965, 1491
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 783
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 3 cut(s) 225, 372, 1451
TaqII GACCGA 1 cut(s) 636
TasI AATT 3 cut(s) 644, 778, 1078
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 9 cut(s) 329, 458, 610, 676, 731, 800, 869, 948, 1483
Tru1I TTAA 6 cut(s) 15, 438, 444, 696, 1113, 1323
Tru9I TTAA 6 cut(s) 15, 438, 444, 696, 1113, 1323
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 5 cut(s) 530, 554, 602, 1090, 1513
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 8 cut(s) 54, 120, 443, 471, 588, 1146, 1308, 1400
TspGWI ACGGA 2 cut(s) 23, 293
Vha464I CTTAAG 1 cut(s) 437
VpaK11BI GGWCC 3 cut(s) 257, 619, 1264
XapI RAATTY 1 cut(s) 1078
XceI RCATGY 1 cut(s) 1357
XcmI CCANNNNNNNNNTGG 2 cut(s) 781, 1258
XhoI CTCGAG 1 cut(s) 1103
XmaJI CCTAGG 1 cut(s) 253
XmiI GTMKAC 2 cut(s) 282, 589
XspI CTAG 5 cut(s) 254, 297, 956, 965, 1491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.