Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Reverse (-)

23413254 .. 23413607

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCCTCCTCAACCGATTCCCCACCTCTACGACCCCAAAGTCATCGCCGCCATGACCCGTGCCGTCTCCGACGTCGCCCGGACCCTCTCCGTCCTCAACGCCCTCGGCGACCGTCCCGACCATGAGGCCGTCGACATCGCCAAGGCCAAGCTCGCCCACATCGAGTCCACTTTCTCCAAGAAGCTCGAGGACCTCGTCCTCACCCATATTATTAACGGCGACTCGCATGACAAAACCAACGAGAAGAAGAACAAGAAATCCAAAACCGACACAGCCACCGTGATTCCCACCATCACCGTAGCCATCGCCGGTTCCATCATTCACAACGCTCGGTCCCTCGAACTCGCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

117

Amino Acids

12.65

Weight (kDa)

8.05

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AatII	GACGTC	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	72
AloI	GAACNNNNNNTCC	2 cut(s)	242, 274
AluBI	AGCT	2 cut(s)	151, 184
AluI	AGCT	2 cut(s)	151, 184
Alw26I	GTCTC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	126, 144
AspS9I	GGNCC	3 cut(s)	81, 190, 333
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	193, 286
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	3 cut(s)	81, 190, 333
BccI	CCATC	3 cut(s)	299, 311, 323
BceAI	ACGGC	3 cut(s)	47, 113, 232
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	3 cut(s)	81, 190, 333
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	3 cut(s)	81, 190, 333
BmiI	GGNNCC	3 cut(s)	83, 313, 335
BmrFI	CCNGG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	103, 141
Bse118I	RCCGGY	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	103, 141
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	128, 146
BsiEI	CGRYCG	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	79, 309
BslFI	GGGAC	2 cut(s)	99, 319
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	2 cut(s)	99, 319
BsnI	GGCC	2 cut(s)	128, 146
BsoBI	CYCGRG	1 cut(s)	185
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	128, 146
BspLI	GGNNCC	3 cut(s)	83, 313, 335
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	103, 141
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	113, 280, 298
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	153
BstMAI	GTCTC	1 cut(s)	70
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	128, 146
BtgZI	GCGATG	3 cut(s)	28, 121, 289
Cac8I	GCNNGC	1 cut(s)	153
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	81, 190, 333
CviAII	CATG	3 cut(s)	52, 122, 227
CviJI	RGCY	6 cut(s)	128, 146, 151, 184, 275, 302
CviKI_1	RGCY	6 cut(s)	128, 146, 151, 184, 275, 302
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	3 cut(s)	81, 190, 333
Eco88I	CYCGRG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	3 cut(s)	55, 125, 230
FaiI	YATR	4 cut(s)	53, 123, 207, 228
FaqI	GGGAC	2 cut(s)	99, 319
FatI	CATG	3 cut(s)	51, 121, 226
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	128, 146
HapII	CCGG	2 cut(s)	79, 309
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	55, 125, 230
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	4 cut(s)	16, 164, 221, 283
HpaII	CCGG	2 cut(s)	79, 309
HphI	GGTGA	2 cut(s)	193, 286
Hpy166II	GTNNAC	2 cut(s)	133, 168
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	2 cut(s)	133, 168
Hpy99I	CGWCG	3 cut(s)	74, 77, 134
HpyCH4III	ACNGT	3 cut(s)	113, 280, 298
HpyCH4IV	ACGT	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	55, 125, 230
LpnPI	CCDG	2 cut(s)	92, 322
MaeII	ACGT	1 cut(s)	72
MboII	GAAGA	2 cut(s)	256, 259
MlyI	GAGTC	2 cut(s)	173, 215
MmeI	TCCRAC	1 cut(s)	93
MseI	TTAA	1 cut(s)	213
MspI	CCGG	2 cut(s)	79, 309
MspR9I	CCNGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	79
NlaIII	CATG	3 cut(s)	55, 125, 230
NlaIV	GGNNCC	3 cut(s)	83, 313, 335
NmeAIII	GCCGAG	1 cut(s)	84
PaeR7I	CTCGAG	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 159, 192
PfeI	GAWTC	2 cut(s)	16, 283
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	2 cut(s)	172, 215
PpsI	GAGTC	2 cut(s)	172, 215
PpuMI	RGGWCCY	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	190
PspN4I	GGNNCC	3 cut(s)	83, 313, 335
PspPI	GGNCC	3 cut(s)	81, 190, 333
PspPPI	RGGWCCY	1 cut(s)	190
PspXI	VCTCGAGB	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	194
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	48
Sau96I	GGNCC	3 cut(s)	81, 190, 333
SchI	GAGTC	2 cut(s)	173, 215
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	5 cut(s)	27, 75, 153, 186, 195
Sfr274I	CTCGAG	1 cut(s)	185
SinI	GGWCC	3 cut(s)	81, 190, 333
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SsiI	CCGC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	3 cut(s)	113, 280, 298
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	4 cut(s)	132, 162, 186, 339
TaqII	GACCGA	1 cut(s)	321
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	16, 283
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TspGWI	ACGGA	1 cut(s)	79
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	3 cut(s)	81, 190, 333
XhoI	CTCGAG	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	132
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.