Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Reverse (-)

82035199 .. 82035396

Gene Structure 198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG587800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGCCCTACCTCTCTGACCCCAAAGCCATCGCCGCCATGACCCGCACCATCTCCGACGTTGCCCAGACCCACTCCGTCCTCAACGCCCTCGACGACTGTCCTGACCACGAGACCGTCGACACCGCCAAGGCCAATCTCGCCCACATCGAGTCCGCTATCTCCAAGAAGCTCGAGGACCTCGTCTTCGTATATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

65

Amino Acids

7.09

Weight (kDa)

4.76

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	4 cut(s)	33, 43, 123, 153
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	129
ArsI	GACNNNNNNTTYG	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	175
BauI	CACGAG	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	175
BccI	CCATC	2 cut(s)	35, 56
BcoDI	GTCTC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	175
BoxI	GACNNNNGTC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	170
BspACI	CCGC	4 cut(s)	33, 43, 123, 153
BspANI	GGCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	98, 115
BstMAI	GTCTC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 137
BstPAI	GACNNNNGTC	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	131
BtgZI	GCGATG	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	175
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	3 cut(s)	26, 131, 169
CviKI_1	RGCY	3 cut(s)	26, 131, 169
Eco130I	CCWWGG	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	40
FaiI	YATR	2 cut(s)	38, 190
FatI	CATG	1 cut(s)	36
FauI	CCCGC	1 cut(s)	50
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	131
Hin1II	CATG	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	16, 55
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	3 cut(s)	59, 95, 119
HpyCH4III	ACNGT	2 cut(s)	98, 115
HpyCH4IV	ACGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 137
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	40
LpnPI	CCDG	2 cut(s)	77, 114
MaeII	ACGT	1 cut(s)	57
MboII	GAAGA	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	20, 89, 98, 166, 188
MseI	TTAA	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	32, 137
NlaIII	CATG	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	4 cut(s)	90, 114, 144, 177
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	175
PshAI	GACNNNNGTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
PspXI	VCTCGAGB	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	179
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	196
SatI	GCNGC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	158
SetI	ASST	4 cut(s)	12, 60, 171, 180
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	175
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SsiI	CCGC	4 cut(s)	33, 43, 123, 153
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	98, 115
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	4 cut(s)	90, 117, 147, 171
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	196
Tru9I	TTAA	1 cut(s)	196
TspGWI	ACGGA	1 cut(s)	64
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.