Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Forward (+)

37797624 .. 37797821

Gene Structure 198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG198700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGCCCCACCTCTCCGACCCCAAAGCCATCGCCGCCAGGACTCGCGCCGTCTCCGACGTCGCCCAGACCCGCTCCGTCCTCAACGCCCTCGATGACCATCCTGACCACGAGACCGTCGACACCGCCAAGGCCAAGCTCGCCCACATCGAGTCCACTATCTCCAAGAAGTTCGAGGACCTCGTCCTCGTATATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

65

Amino Acids

7.14

Weight (kDa)

6.01

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	45
AciI	CCGC	3 cut(s)	33, 70, 123
AcyI	GRCGYC	1 cut(s)	57
AjnI	CCWGG	1 cut(s)	35
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	55, 104
AoxI	GGCC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	175
BauI	CACGAG	1 cut(s)	107
BccI	CCATC	2 cut(s)	35, 105
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	55, 104
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	131
BsmAI	GTCTC	2 cut(s)	55, 104
BsmBI	CGTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	104
BspACI	CCGC	3 cut(s)	33, 70, 123
BspANI	GGCC	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	126
BssNI	GRCGYC	1 cut(s)	57
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	97
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	47
BstMAI	GTCTC	2 cut(s)	55, 104
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 137
BstNI	CCWGG	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	35
BstUI	CGCG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	131
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	175
CviJI	RGCY	3 cut(s)	26, 131, 136
CviKI_1	RGCY	3 cut(s)	26, 131, 136
Eco130I	CCWWGG	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	55
FaiI	YATR	1 cut(s)	190
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	33
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	57
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	40, 149
Hpy166II	GTNNAC	2 cut(s)	118, 153
Hpy188I	TCNGA	2 cut(s)	16, 55
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	2 cut(s)	118, 153
Hpy99I	CGWCG	3 cut(s)	59, 62, 119
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 137
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	57
HspAI	GCGC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	4 cut(s)	22, 49, 77, 114
MaeII	ACGT	1 cut(s)	57
MbiI	CCGCTC	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	34, 158
MmeI	TCCRAC	2 cut(s)	39, 78
MnlI	CCTC	6 cut(s)	20, 89, 98, 166, 188, 194
MseI	TTAA	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	37
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	32, 137
PcsI	WCGNNNNNNNCGW	3 cut(s)	114, 144, 177
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	2 cut(s)	34, 157
PpsI	GAGTC	2 cut(s)	34, 157
PpuMI	RGGWCCY	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	179
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	196
SatI	GCNGC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	2 cut(s)	34, 158
ScrFI	CCNGG	1 cut(s)	37
SetI	ASST	4 cut(s)	12, 60, 138, 180
SinI	GGWCC	1 cut(s)	175
SsiI	CCGC	3 cut(s)	33, 70, 123
StyD4I	CCNGG	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	4 cut(s)	90, 117, 147, 171
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	196
Tru9I	TTAA	1 cut(s)	196
TspGWI	ACGGA	1 cut(s)	64
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	117
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.