Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Reverse (-)

15337008 .. 15337532

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG174100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCTCCACCAACAGCCCTCGATCACTCAACTTCAACTCCCCAAGCAGATCCGATAAGAAGAAATCCAAATCCGCAGTCAAAGACGACTCCAAAGCCGCAACTACAAGCTTCGGTGGCGGTGGCGGAGGATTTGGCCCAATTGATCAAACCCCAGCAACCATCCTCATCCTCAAGCCTCCTCAACCAGATACCCCCCCCCCTCTTCGACCTCAAAGTCATTGCCGCCATGACCCGCGCCGTCTCCGACGTCTCCCAGACCCTCTCCTTCCTCAACGCCCTTGGCTACTGTCCCGACCACGAGCCCTTCGACACTGCCAAGGCCAAGCTCACCCACAACATGCCCACTCCCTCCAAGAAGCTCGAGGACCTCGTCCTCTCCCCCCGCCCCTCTAACGTTGACCACTTCCAGTGGTGGGCCTACCTCGCTGAGCGAGAGCAGGAGTGCCGTGACTCCGCTGAGAAAGAGAAGCGAGACTGCAAGGCCATTCTCCAGCTCGAGGGAAAGAAAAAGGGAAGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

174

Amino Acids

19.32

Weight (kDa)

7.73

Isoelectric Point (pI)

56.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AatII	GACGTC	1 cut(s)	252
AccII	CGCG	1 cut(s)	237
AciI	CCGC	8 cut(s)	74, 98, 119, 125, 225, 235, 385, 456
AclI	AACGTT	1 cut(s)	396
AclWI	GGATC	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	415, 499
AgsI	TTSAA	1 cut(s)	36
AluBI	AGCT	4 cut(s)	110, 328, 361, 496
AluI	AGCT	4 cut(s)	110, 328, 361, 496
Alw26I	GTCTC	4 cut(s)	9, 247, 256, 468
AlwI	GGATC	1 cut(s)	44
Ama87I	CYCGRG	2 cut(s)	362, 497
AoxI	GGCC	4 cut(s)	135, 321, 417, 483
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	3 cut(s)	136, 367, 417
AsuHPI	GGTGA	1 cut(s)	322
AvaI	CYCGRG	2 cut(s)	362, 497
AvaII	GGWCC	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	306
BauI	CACGAG	1 cut(s)	299
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	2 cut(s)	224, 432
BclI	TGATCA	1 cut(s)	144
BcoDI	GTCTC	4 cut(s)	9, 247, 256, 468
BisI	GCNGC	2 cut(s)	98, 225
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	2 cut(s)	99, 226
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	2 cut(s)	362, 497
BmgT120I	GGNCC	3 cut(s)	136, 367, 417
BpmI	CTGGAG	1 cut(s)	476
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	280, 318
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 499
Bse1I	ACTGG	1 cut(s)	409
Bse3DI	GCAATG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	280, 318
BseGI	GGATG	2 cut(s)	161, 167
BseLI	CCNNNNNNNGG	2 cut(s)	415, 499
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	2 cut(s)	420, 450
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	1 cut(s)	170
BseYI	CCCAGC	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	4 cut(s)	137, 323, 419, 485
BsiHKCI	CYCGRG	2 cut(s)	362, 497
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	2 cut(s)	415, 499
BsmAI	GTCTC	4 cut(s)	9, 247, 256, 468
BsmBI	CGTCTC	2 cut(s)	247, 256
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	4 cut(s)	137, 323, 419, 485
BsoBI	CYCGRG	2 cut(s)	362, 497
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	3 cut(s)	22, 49, 144
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	8 cut(s)	74, 98, 119, 125, 225, 235, 385, 456
BspANI	GGCC	4 cut(s)	137, 323, 419, 485
BspCNI	CTCAG	2 cut(s)	421, 451
BspFNI	CGCG	1 cut(s)	237
BspPI	GGATC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	2 cut(s)	280, 318
BssMI	GATC	3 cut(s)	22, 49, 144
BssNI	GRCGYC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	2 cut(s)	280, 318
Bst2BI	CACGAG	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	429, 459
BstF5I	GGATG	2 cut(s)	161, 167
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	3 cut(s)	25, 52, 147
BstMAI	GTCTC	4 cut(s)	9, 247, 256, 468
BstMBI	GATC	3 cut(s)	22, 49, 144
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 425
BstNSI	RCATGY	1 cut(s)	343
BstUI	CGCG	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	4 cut(s)	137, 323, 419, 485
BtsCI	GGATG	2 cut(s)	161, 167
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	312, 416
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	3 cut(s)	136, 367, 417
CviAII	CATG	2 cut(s)	229, 340
DdeI	CTNAG	2 cut(s)	429, 459
DpnI	GATC	3 cut(s)	24, 51, 146
DpnII	GATC	3 cut(s)	22, 49, 144
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	140
Eco130I	CCWWGG	2 cut(s)	280, 318
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	367
Eco88I	CYCGRG	2 cut(s)	362, 497
EcoO109I	RGGNCCY	1 cut(s)	367
EcoT14I	CCWWGG	2 cut(s)	280, 318
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	2 cut(s)	280, 318
Esp3I	CGTCTC	2 cut(s)	247, 256
FaeI	CATG	2 cut(s)	232, 343
FaiI	YATR	2 cut(s)	230, 341
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	2 cut(s)	228, 339
FauI	CCCGC	2 cut(s)	242, 392
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	98, 225
FokI	GGATG	2 cut(s)	148, 154
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	98, 225
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	2 cut(s)	98, 225
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	4 cut(s)	137, 323, 419, 485
HhaI	GCGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	232, 343
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	2 cut(s)	88, 452
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	54, 247
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	277, 316, 510
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	2 cut(s)	249, 396
HpyCH4V	TGCA	1 cut(s)	480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 425
HpyF3I	CTNAG	2 cut(s)	429, 459
HpySE526I	ACGT	2 cut(s)	249, 396
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	232, 343
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	22, 49, 144
LpnPI	CCDG	6 cut(s)	167, 200, 269, 422, 425, 506
MaeII	ACGT	2 cut(s)	249, 396
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	3 cut(s)	24, 51, 146
MboI	GATC	3 cut(s)	22, 49, 144
MboII	GAAGA	2 cut(s)	72, 196
MfeI	CAATTG	1 cut(s)	140
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	1 cut(s)	140
MlyI	GAGTC	2 cut(s)	82, 446
MmeI	TCCRAC	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	458
MunI	CAATTG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	116, 425
NdeII	GATC	3 cut(s)	22, 49, 144
NlaIII	CATG	2 cut(s)	232, 343
NmuCI	GTSAC	1 cut(s)	449
NspI	RCATGY	1 cut(s)	343
PaeR7I	CTCGAG	2 cut(s)	362, 497
PcsI	WCGNNNNNNNCGW	2 cut(s)	306, 369
PflFI	GACNNNGTC	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	99, 226
PleI	GAGTC	2 cut(s)	82, 446
PpsI	GAGTC	2 cut(s)	82, 446
PpuMI	RGGWCCY	1 cut(s)	367
Psp1406I	AACGTT	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	153
PspPI	GGNCC	3 cut(s)	136, 367, 417
PspPPI	RGGWCCY	1 cut(s)	367
PspXI	VCTCGAGB	2 cut(s)	362, 497
PsuI	RGATCY	1 cut(s)	49
PsyI	GACNNNGTC	1 cut(s)	371
SatI	GCNGC	2 cut(s)	98, 225
Sau3AI	GATC	3 cut(s)	22, 49, 144
Sau96I	GGNCC	3 cut(s)	136, 367, 417
SchI	GAGTC	2 cut(s)	82, 446
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	9 cut(s)	112, 213, 252, 330, 363, 372, 399, 426, 498
Sfr274I	CTCGAG	2 cut(s)	362, 497
SinI	GGWCC	1 cut(s)	367
SlaI	CTCGAG	2 cut(s)	362, 497
SmlI	CTYRAG	3 cut(s)	172, 362, 497
SmoI	CTYRAG	3 cut(s)	172, 362, 497
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	8 cut(s)	74, 98, 119, 125, 225, 235, 385, 456
StyI	CCWWGG	2 cut(s)	280, 318
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	2 cut(s)	252, 399
TaqI	TCGA	5 cut(s)	21, 207, 309, 363, 498
TasI	AATT	1 cut(s)	140
TauI	GCSGC	2 cut(s)	100, 227
TscAI	CASTG	2 cut(s)	319, 416
TseFI	GTSAC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	449
TspRI	CASTG	2 cut(s)	319, 416
Tth111I	GACNNNGTC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	367
XceI	RCATGY	1 cut(s)	343
XhoI	CTCGAG	2 cut(s)	362, 497
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.