pycom05g02800

Plant intracellular ras-group-related LRR protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
3294202 .. 3295554
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02800.2

Sequence Viewer

Length: 1185 bp
ATGGATCCCAACCCCTCCAAATTCCCCATGCTCTCCTACGTCATGTCCCGCCTCCCCTCCTTGGCTCCCAAGCCCTCAACACCCGCCGCCCCTCCCCACCTCTGCACCATCCGCATCGACCCCCATCCCTCCGACCAGCCCCCCATCCTCAACCAGATGCCCCACCTCTCCGACCCCAAAGTCCTCGCCGCCATGCAACGCGCCGTCGCCGACGTCTCCCAGACCCGTTCGGCCCTCAAGACCCTTGGCGACCGACCCGACCACGAGCTCGTCGACACCGCCAAGGTTAGGCTCTGCGAAATCGACTCCGATTTGGCCAAGAGACTAGAGGAGCTTGTCATCTCTCCCCGGCCTTCTGACTTTGACAGGCTCCAGTGGCGGGTTCGGCTGGCCGACAAAGAGGCTCAGTTTCGCGAGGCGGCGGAGAAGGAGAAGCAAGGCTACACTGCGATTCTGCAGCTCGATGAGTTGCACTCCGCCTACGACAAGCTTCTCAAGGACGCCGAGCAGAGGCTCGTCAAGATTTACGAGTCGGCCATGGCTGGGGTCGTGGAATTTGATGAGGAGAAGGTGGAGGGCGGTGATGAGGGTTTGATCAACGACCAAGTCCCTGAGGAGGTGGCAGGGATTCTTCAGGAGGCCTCCCGGACCACTCTGGATCGGGTCAACCTCTCGGGTCGGCAGTTACGGTTCTTGCCCGAGGCCTTTGGCTCCATTCACAGTTTGCTCCTGCTGGATCTTTCCAGCAATGAACTCAAGGTTATTCCTGAGTCAATAGGTGGATTAGAGAAACTTGAAGAGCTAAACGTGTCTTCAAACCTTTTGGAGTCACTGCCGGAATCAATTGGGGCGTTGCAAAAGTTGAAGGTCCTGAATGCCACCGGGAACAAGCTAAGTGCCCTTCCTGACTCCATCTGTCAATGCAGGTCGTTGGCGGAGTTGGATGTGAGCTACAACGGCCTCACATACCTGCCAACCAACATTGGTTTCGAGTTGGCCAATCTACAGAAGCTTTCTATCCAGTTAAACAAGATTCGGTCACTTCCTACCTCTGTTTGTGAGCTGAGGTCTTTACGCTGCTTGGATGCTCACTTCAATGAGCTCCGCGGCCTTCCTCTGGCCTTTGGTCGGTTGACCAATCTCGAAATCCTCAATCTTGCCAGTAATTGGAGCTTATCGATCTAA

Protein Analysis

395

Amino Acids

43.66

Weight (kDa)

5.16

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 1 cut(s) 216
Acc36I ACCTGC 2 cut(s) 915, 978
AccB7I CCANNNNNTGG 1 cut(s) 1167
AccI GTMKAC 1 cut(s) 273
AccII CGCG 3 cut(s) 201, 414, 1107
AclWI GGATC 3 cut(s) 12, 666, 744
AcoI YGGCCR 4 cut(s) 315, 390, 534, 996
AcsI RAATTY 2 cut(s) 20, 554
AcuI CTGAAG 1 cut(s) 617
AcyI GRCGYC 2 cut(s) 213, 501
AfiI CCNNNNNNNGG 9 cut(s) 61, 288, 379, 510, 543, 616, 1117, 1128, 1167
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 4 cut(s) 797, 816, 865, 1096
AjuI GAANNNNNNNTTGG 2 cut(s) 971, 1003
Alw21I GWGCWC 2 cut(s) 270, 1104
Alw26I GTCTC 2 cut(s) 220, 316
AlwI GGATC 3 cut(s) 12, 666, 744
Ama87I CYCGRG 2 cut(s) 673, 698
ApeKI GCWGC 2 cut(s) 457, 1077
ApoI RAATTY 2 cut(s) 20, 554
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 3 cut(s) 232, 648, 868
AsuC2I CCSGG 3 cut(s) 349, 646, 883
AsuHPI GGTGA 1 cut(s) 593
AvaI CYCGRG 2 cut(s) 673, 698
AvaII GGWCC 2 cut(s) 648, 868
AxyI CCTNAGG 1 cut(s) 612
BaeGI GKGCMC 1 cut(s) 901
BalI TGGCCA 2 cut(s) 317, 998
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 270, 1104
BarI GAAGNNNNNNTAC 2 cut(s) 425, 457
BauI CACGAG 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 804
Bbv12I GWGCWC 2 cut(s) 270, 1104
BbvCI CCTCAGC 1 cut(s) 1064
BbvI GCAGC 2 cut(s) 469, 1064
BccI CCATC 4 cut(s) 116, 132, 152, 920
BceAI ACGGC 2 cut(s) 188, 973
BclI TGATCA 1 cut(s) 594
BcnI CCSGG 3 cut(s) 349, 646, 883
BcoDI GTCTC 2 cut(s) 220, 316
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 2 cut(s) 455, 1004
BfuAI ACCTGC 2 cut(s) 915, 978
BisI GCNGC 6 cut(s) 87, 189, 420, 458, 1078, 1108
BlsI GCNGC 6 cut(s) 88, 190, 421, 459, 1079, 1109
Bme1390I CCNGG 3 cut(s) 349, 646, 883
Bme18I GGWCC 2 cut(s) 648, 868
BmeT110I CYCGRG 2 cut(s) 673, 698
BmgT120I GGNCC 3 cut(s) 232, 648, 868
BmiI GGNNCC 4 cut(s) 6, 66, 371, 712
BmrFI CCNGG 3 cut(s) 349, 646, 883
BmsI GCATC 3 cut(s) 123, 147, 1075
BpiI GAAGAC 1 cut(s) 804
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpmI CTGGAG 1 cut(s) 356
Bpu10I CCTNAGC 1 cut(s) 1064
BpuEI CTTGAG 3 cut(s) 221, 479, 740
BpuMI CCSGG 3 cut(s) 349, 646, 883
Bsa29I ATCGAT 1 cut(s) 1178
BsaHI GRCGYC 2 cut(s) 213, 501
BsaJI CCNNGG 7 cut(s) 60, 244, 282, 347, 537, 699, 1105
Bsc4I CCNNNNNNNGG 9 cut(s) 61, 288, 379, 510, 543, 616, 1117, 1128, 1167
Bse1I ACTGG 3 cut(s) 373, 1021, 1161
Bse21I CCTNAGG 1 cut(s) 612
Bse3DI GCAATG 1 cut(s) 754
BseCI ATCGAT 1 cut(s) 1178
BseDI CCNNGG 7 cut(s) 60, 244, 282, 347, 537, 699, 1105
BseGI GGATG 5 cut(s) 108, 124, 144, 949, 1090
BseLI CCNNNNNNNGG 9 cut(s) 61, 288, 379, 510, 543, 616, 1117, 1128, 1167
BseMI GCAATG 1 cut(s) 754
BseMII CTCAG 4 cut(s) 419, 603, 759, 1055
BseNI ACTGG 3 cut(s) 373, 1021, 1161
BseRI GAGGAG 3 cut(s) 344, 578, 629
BseSI GKGCMC 1 cut(s) 901
BseXI GCAGC 2 cut(s) 469, 1064
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 1 cut(s) 88
Bsh1236I CGCG 3 cut(s) 201, 414, 1107
Bsh1285I CGRYCG 1 cut(s) 253
BshVI ATCGAT 1 cut(s) 1178
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 2 cut(s) 270, 1104
BsiHKCI CYCGRG 2 cut(s) 673, 698
BsiSI CCGG 4 cut(s) 349, 646, 836, 882
BslFI GGGAC 2 cut(s) 31, 593
BslI CCNNNNNNNGG 9 cut(s) 61, 288, 379, 510, 543, 616, 1117, 1128, 1167
BsmAI GTCTC 2 cut(s) 220, 316
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 2 cut(s) 31, 593
BsmI GAATGC 1 cut(s) 880
BsoBI CYCGRG 2 cut(s) 673, 698
Bsp1286I GDGCHC 3 cut(s) 270, 901, 1104
Bsp143I GATC 5 cut(s) 4, 594, 658, 736, 1179
Bsp19I CCATGG 1 cut(s) 537
Bsp68I TCGCGA 1 cut(s) 414
BspCNI CTCAG 4 cut(s) 418, 604, 760, 1056
BspDI ATCGAT 1 cut(s) 1178
BspFNI CGCG 3 cut(s) 201, 414, 1107
BspLI GGNNCC 4 cut(s) 6, 66, 371, 712
BspMAI CTGCAG 1 cut(s) 459
BspMI ACCTGC 2 cut(s) 915, 978
BspPI GGATC 3 cut(s) 12, 666, 744
BspQI GCTCTTC 1 cut(s) 792
BsrDI GCAATG 1 cut(s) 754
BsrI ACTGG 3 cut(s) 373, 1021, 1161
BssECI CCNNGG 7 cut(s) 60, 244, 282, 347, 537, 699, 1105
BssMI GATC 5 cut(s) 4, 594, 658, 736, 1179
BssNI GRCGYC 2 cut(s) 213, 501
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 4 cut(s) 60, 244, 282, 537
Bst2BI CACGAG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 690, 722
Bst6I CTCTTC 1 cut(s) 792
BstACI GRCGYC 2 cut(s) 213, 501
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 5 cut(s) 405, 612, 768, 893, 1064
BstDSI CCRYGG 2 cut(s) 537, 1105
BstF5I GGATG 5 cut(s) 108, 124, 144, 949, 1090
BstFNI CGCG 3 cut(s) 201, 414, 1107
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 5 cut(s) 7, 597, 661, 739, 1182
BstMAI GTCTC 2 cut(s) 220, 316
BstMBI GATC 5 cut(s) 4, 594, 658, 736, 1179
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 4 cut(s) 111, 376, 385, 957
BstSCI CCNGG 3 cut(s) 347, 644, 881
BstSFI CTRYAG 2 cut(s) 455, 1004
BstSLI GKGCMC 1 cut(s) 901
BstUI CGCG 3 cut(s) 201, 414, 1107
BstV1I GCAGC 2 cut(s) 469, 1064
BstV2I GAAGAC 1 cut(s) 804
BstX2I RGATCY 2 cut(s) 4, 736
BstYI RGATCY 2 cut(s) 4, 736
Bsu15I ATCGAT 1 cut(s) 1178
Bsu36I CCTNAGG 1 cut(s) 612
BsuTUI ATCGAT 1 cut(s) 1178
BtgI CCRYGG 2 cut(s) 537, 1105
BtsCI GGATG 5 cut(s) 108, 124, 144, 949, 1090
BtsI GCAGTG 2 cut(s) 444, 830
BtsIMutI CAGTG 3 cut(s) 380, 444, 830
BtuMI TCGCGA 1 cut(s) 414
BveI ACCTGC 2 cut(s) 915, 978
Cac8I GCNNGC 1 cut(s) 390
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 232, 648, 868
Cfr42I CCGCGG 1 cut(s) 1108
ClaI ATCGAT 1 cut(s) 1178
CseI GACGC 1 cut(s) 509
CviAII CATG 4 cut(s) 28, 43, 193, 538
DdeI CTNAG 5 cut(s) 405, 612, 768, 893, 1064
DpnI GATC 5 cut(s) 6, 596, 660, 738, 1181
DpnII GATC 5 cut(s) 4, 594, 658, 736, 1179
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 4 cut(s) 315, 390, 534, 996
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
EciI GGCGGA 3 cut(s) 437, 466, 950
Ecl136II GAGCTC 2 cut(s) 268, 1102
Eco130I CCWWGG 4 cut(s) 60, 244, 282, 537
Eco147I AGGCCT 2 cut(s) 641, 704
Eco24I GRGCYC 2 cut(s) 270, 1104
Eco47I GGWCC 2 cut(s) 648, 868
Eco53kI GAGCTC 2 cut(s) 268, 1102
Eco57I CTGAAG 1 cut(s) 617
Eco81I CCTNAGG 1 cut(s) 612
Eco88I CYCGRG 2 cut(s) 673, 698
EcoICRI GAGCTC 2 cut(s) 268, 1102
EcoO109I RGGNCCY 1 cut(s) 868
EcoT14I CCWWGG 4 cut(s) 60, 244, 282, 537
EcoT38I GRGCYC 2 cut(s) 270, 1104
ErhI CCWWGG 4 cut(s) 60, 244, 282, 537
Esp3I CGTCTC 1 cut(s) 220
FaeI CATG 4 cut(s) 31, 46, 196, 541
FaiI YATR 5 cut(s) 29, 44, 194, 539, 967
FaqI GGGAC 2 cut(s) 31, 593
FatI CATG 4 cut(s) 27, 42, 192, 537
FauI CCCGC 3 cut(s) 56, 91, 372
FbaI TGATCA 1 cut(s) 594
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 6 cut(s) 87, 189, 420, 458, 1078, 1108
FokI GGATG 5 cut(s) 95, 111, 131, 956, 1097
FriOI GRGCYC 2 cut(s) 270, 1104
Fsp4HI GCNGC 6 cut(s) 87, 189, 420, 458, 1078, 1108
FspBI CTAG 1 cut(s) 326
GlaI GCGC 1 cut(s) 202
GluI GCNGC 6 cut(s) 87, 189, 420, 458, 1078, 1108
GsaI CCCAGC 1 cut(s) 546
GsuI CTGGAG 1 cut(s) 356
HapII CCGG 4 cut(s) 349, 646, 836, 882
HgaI GACGC 1 cut(s) 509
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 2 cut(s) 213, 501
Hin1II CATG 4 cut(s) 31, 46, 196, 541
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 3 cut(s) 274, 667, 1134
HindII GTYRAC 3 cut(s) 274, 667, 1134
HindIII AAGCTT 2 cut(s) 488, 1010
HinfI GANTC 9 cut(s) 305, 451, 530, 628, 770, 827, 839, 908, 1033
HpaII CCGG 4 cut(s) 349, 646, 836, 882
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 3 cut(s) 274, 667, 1134
Hpy188I TCNGA 4 cut(s) 133, 172, 310, 358
Hpy188III TCNNGA 9 cut(s) 238, 413, 520, 635, 656, 767, 871, 905, 1142
Hpy8I GTNNAC 3 cut(s) 274, 667, 1134
Hpy99I CGWCG 3 cut(s) 209, 215, 275
HpyAV CCTTC 6 cut(s) 363, 421, 562, 859, 911, 1121
HpyCH4III ACNGT 2 cut(s) 690, 722
HpyCH4IV ACGT 3 cut(s) 39, 213, 807
HpyCH4V TGCA 6 cut(s) 105, 196, 457, 472, 856, 924
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 376, 385, 957
HpyF3I CTNAG 5 cut(s) 405, 612, 768, 893, 1064
HpySE526I ACGT 3 cut(s) 39, 213, 807
Hsp92I GRCGYC 2 cut(s) 213, 501
Hsp92II CATG 4 cut(s) 31, 46, 196, 541
HspAI GCGC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 594
KspI CCGCGG 1 cut(s) 1108
Kzo9I GATC 5 cut(s) 4, 594, 658, 736, 1179
LguI GCTCTTC 1 cut(s) 792
LmnI GCTCC 7 cut(s) 70, 331, 375, 716, 732, 1107, 1170
Lsp1109I GCAGC 2 cut(s) 469, 1064
LweI GCATC 3 cut(s) 123, 147, 1075
MaeI CTAG 1 cut(s) 326
MaeII ACGT 3 cut(s) 39, 213, 807
MaeIII GTNAC 3 cut(s) 684, 828, 1038
MalI GATC 5 cut(s) 6, 596, 660, 738, 1181
MboI GATC 5 cut(s) 4, 594, 658, 736, 1179
MboII GAAGA 3 cut(s) 623, 804, 809
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 2 cut(s) 4, 736
MhlI GDGCHC 3 cut(s) 270, 901, 1104
MlsI TGGCCA 2 cut(s) 317, 998
MluCI AATT 4 cut(s) 20, 554, 843, 1165
MluNI TGGCCA 2 cut(s) 317, 998
MlyI GAGTC 5 cut(s) 299, 539, 779, 836, 902
MmeI TCCRAC 3 cut(s) 156, 195, 921
Mox20I TGGCCA 2 cut(s) 317, 998
MscI TGGCCA 2 cut(s) 317, 998
MseI TTAA 1 cut(s) 1025
MslI CAYNNNNRTG 1 cut(s) 1095
Msp20I TGGCCA 2 cut(s) 317, 998
MspA1I CMGCKG 1 cut(s) 1107
MspI CCGG 4 cut(s) 349, 646, 836, 882
MspR9I CCNGG 3 cut(s) 349, 646, 883
MunI CAATTG 1 cut(s) 843
Mva1269I GAATGC 1 cut(s) 880
MvnI CGCG 3 cut(s) 201, 414, 1107
MwoI GCNNNNNNNGC 4 cut(s) 111, 376, 385, 957
NciI CCSGG 3 cut(s) 349, 646, 883
NcoI CCATGG 1 cut(s) 537
NdeII GATC 5 cut(s) 4, 594, 658, 736, 1179
NlaIII CATG 4 cut(s) 31, 46, 196, 541
NlaIV GGNNCC 4 cut(s) 6, 66, 371, 712
NmeAIII GCCGAG 1 cut(s) 529
NmuCI GTSAC 2 cut(s) 828, 1038
NruI TCGCGA 1 cut(s) 414
PceI AGGCCT 2 cut(s) 641, 704
PciSI GCTCTTC 1 cut(s) 792
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 1 cut(s) 880
PfeI GAWTC 4 cut(s) 451, 628, 839, 1033
PflFI GACNNNGTC 1 cut(s) 605
PflMI CCANNNNNTGG 1 cut(s) 1167
PfoI TCCNGGA 1 cut(s) 644
PkrI GCNGC 6 cut(s) 88, 190, 421, 459, 1079, 1109
PleI GAGTC 5 cut(s) 299, 538, 778, 835, 902
PpsI GAGTC 5 cut(s) 299, 538, 778, 835, 902
PpuMI RGGWCCY 1 cut(s) 868
Psp124BI GAGCTC 2 cut(s) 270, 1104
Psp5II RGGWCCY 1 cut(s) 868
PspFI CCCAGC 1 cut(s) 542
PspN4I GGNNCC 4 cut(s) 6, 66, 371, 712
PspPI GGNCC 3 cut(s) 232, 648, 868
PspPPI RGGWCCY 1 cut(s) 868
PstI CTGCAG 1 cut(s) 459
PsuI RGATCY 2 cut(s) 4, 736
PsyI GACNNNGTC 1 cut(s) 605
RruI TCGCGA 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 1095
SacI GAGCTC 2 cut(s) 270, 1104
SacII CCGCGG 1 cut(s) 1108
SalI GTCGAC 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 792
SaqAI TTAA 1 cut(s) 1025
SatI GCNGC 6 cut(s) 87, 189, 420, 458, 1078, 1108
Sau3AI GATC 5 cut(s) 4, 594, 658, 736, 1179
Sau96I GGNCC 3 cut(s) 232, 648, 868
SchI GAGTC 5 cut(s) 299, 539, 779, 836, 902
ScrFI CCNGG 3 cut(s) 349, 646, 883
SduI GDGCHC 3 cut(s) 270, 901, 1104
SfaNI GCATC 3 cut(s) 123, 147, 1075
SfcI CTRYAG 2 cut(s) 455, 1004
Sfr303I CCGCGG 1 cut(s) 1108
SgrBI CCGCGG 1 cut(s) 1108
SinI GGWCC 2 cut(s) 648, 868
SmiMI CAYNNNNRTG 1 cut(s) 1095
SmlI CTYRAG 3 cut(s) 236, 494, 755
SmoI CTYRAG 3 cut(s) 236, 494, 755
Sse9I AATT 4 cut(s) 20, 554, 843, 1165
SseBI AGGCCT 2 cut(s) 641, 704
SspMI CTAG 1 cut(s) 326
SstI GAGCTC 2 cut(s) 270, 1104
StuI AGGCCT 2 cut(s) 641, 704
StyD4I CCNGG 3 cut(s) 347, 644, 881
StyI CCWWGG 4 cut(s) 60, 244, 282, 537
TaaI ACNGT 2 cut(s) 690, 722
TaiI ACGT 3 cut(s) 42, 216, 810
TaqI TCGA 7 cut(s) 117, 273, 303, 462, 990, 1143, 1178
TaqII GACCGA 2 cut(s) 267, 1026
TasI AATT 4 cut(s) 20, 554, 843, 1165
TauI GCSGC 4 cut(s) 89, 191, 422, 1110
TfiI GAWTC 4 cut(s) 451, 628, 839, 1033
Tru1I TTAA 1 cut(s) 1025
Tru9I TTAA 1 cut(s) 1025
TscAI CASTG 3 cut(s) 380, 451, 837
TseFI GTSAC 2 cut(s) 828, 1038
TseI GCWGC 2 cut(s) 457, 1077
Tsp45I GTSAC 2 cut(s) 828, 1038
TspDTI ATGAA 1 cut(s) 765
TspRI CASTG 3 cut(s) 380, 451, 837
Tth111I GACNNNGTC 1 cut(s) 605
Van91I CCANNNNNTGG 1 cut(s) 1167
VpaK11BI GGWCC 2 cut(s) 648, 868
XapI RAATTY 2 cut(s) 20, 554
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 1 cut(s) 326
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.