Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Reverse (-)

58330480 .. 58330965

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG396200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGATCCGAACCCGTCCAGCTTCCCCATCCTTTCCTACATCATGGACCGCCTTTCCACCGTAGGATCCAAGTCTACTATCGACGACATCTCCGACCTCGAGTCCATTCAAATCGACAATGGCCAGCCCCAGTTGATCAAACCCCAGCAACCATCCTCATCCTCCTCAGGCCTCCTCAACCAGATGCCCCACCTCTCCGACCCCAAAGTCATCGCCGCCATGACTCGCGCCGTCTCCGACGTTACCCAGACCCACTCCGTCCTCAACGCCCTCCGCGACCGTCCGGACCACGAGGCCGTCGACATCGCCAAGGCCTCTTCCCCCAACCACACCCTCAACGGCGATCCAAACTCTCCTTCATCACCCCCTCCAAAATCACTGCCGAATTCTCTCACCACAACCCCAACGTTGCCCGAATCAATAACGGTAACTTCGGGTCCTGCCCCGACTCCATCATCCAGCCTCCTAGAGTCCAAGTGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

161

Amino Acids

17.07

Weight (kDa)

4.88

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccI	GTMKAC	2 cut(s)	74, 300
AccII	CGCG	2 cut(s)	228, 276
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	3 cut(s)	49, 216, 274
AclI	AACGTT	1 cut(s)	407
AclWI	GGATC	4 cut(s)	12, 60, 73, 338
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	385
AgsI	TTSAA	1 cut(s)	110
AhdI	GACNNNNNGTC	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	340, 372
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	4 cut(s)	12, 60, 73, 338
Ama87I	CYCGRG	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	4 cut(s)	121, 169, 294, 312
ApoI	RAATTY	1 cut(s)	385
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	3 cut(s)	46, 286, 437
AsuHPI	GGTGA	2 cut(s)	354, 385
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	3 cut(s)	46, 286, 437
AxyI	CCTNAGG	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	123
BamHI	GGATCC	2 cut(s)	4, 65
BauI	CACGAG	1 cut(s)	290
BccI	CCATC	3 cut(s)	35, 160, 460
BceAI	ACGGC	3 cut(s)	215, 281, 355
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	467
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme18I	GGWCC	3 cut(s)	46, 286, 437
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	3 cut(s)	46, 286, 437
BmiI	GGNNCC	3 cut(s)	6, 67, 438
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	283
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse1I	ACTGG	1 cut(s)	130
Bse21I	CCTNAGG	1 cut(s)	166
BseAI	TCCGGA	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	4 cut(s)	27, 152, 158, 455
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	2 cut(s)	154, 164
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	2 cut(s)	228, 276
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	4 cut(s)	123, 171, 296, 314
BsiEI	CGRYCG	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	238
BsmBI	CGTCTC	1 cut(s)	238
BsnI	GGCC	4 cut(s)	123, 171, 296, 314
BsoBI	CYCGRG	1 cut(s)	98
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	4 cut(s)	4, 65, 135, 343
BspACI	CCGC	3 cut(s)	49, 216, 274
BspANI	GGCC	4 cut(s)	123, 171, 296, 314
BspCNI	CTCAG	1 cut(s)	179
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	2 cut(s)	228, 276
BspLI	GGNNCC	3 cut(s)	6, 67, 438
BspPI	GGATC	4 cut(s)	12, 60, 73, 338
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	4 cut(s)	4, 65, 135, 343
BssSI	CACGAG	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	290
Bst4CI	ACNGT	3 cut(s)	61, 281, 427
Bst6I	CTCTTC	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	166
BstF5I	GGATG	4 cut(s)	27, 152, 158, 455
BstFNI	CGCG	2 cut(s)	228, 276
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	4 cut(s)	7, 68, 138, 346
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	4 cut(s)	4, 65, 135, 343
BstMCI	CGRYCG	1 cut(s)	280
BstUI	CGCG	2 cut(s)	228, 276
BstX2I	RGATCY	2 cut(s)	4, 65
BstYI	RGATCY	2 cut(s)	4, 65
Bsu36I	CCTNAGG	1 cut(s)	166
BsuRI	GGCC	4 cut(s)	123, 171, 296, 314
BtgZI	GCGATG	2 cut(s)	196, 289
BtsCI	GGATG	4 cut(s)	27, 152, 158, 455
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	46, 286, 437
CviAII	CATG	2 cut(s)	43, 220
CviJI	RGCY	7 cut(s)	21, 123, 127, 171, 296, 314, 462
CviKI_1	RGCY	7 cut(s)	21, 123, 127, 171, 296, 314, 462
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	4 cut(s)	6, 67, 137, 345
DpnII	GATC	4 cut(s)	4, 65, 135, 343
DrdI	GACNNNNNNGTC	1 cut(s)	206
DriI	GACNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	322
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	2 cut(s)	171, 314
Eco47I	GGWCC	3 cut(s)	46, 286, 437
Eco81I	CCTNAGG	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	2 cut(s)	46, 223
FaiI	YATR	2 cut(s)	44, 221
FatI	CATG	2 cut(s)	42, 219
FbaI	TGATCA	1 cut(s)	135
FblI	GTMKAC	2 cut(s)	74, 300
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	4 cut(s)	14, 139, 145, 442
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	216
GsaI	CCCAGC	1 cut(s)	148
HaeIII	GGCC	4 cut(s)	123, 171, 296, 314
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	46, 223
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	5 cut(s)	101, 223, 416, 448, 470
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	2 cut(s)	354, 385
Hpy166II	GTNNAC	2 cut(s)	75, 301
Hpy188I	TCNGA	4 cut(s)	9, 94, 199, 238
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	2 cut(s)	75, 301
Hpy99I	CGWCG	3 cut(s)	86, 242, 302
HpyAV	CCTTC	1 cut(s)	366
HpyCH4III	ACNGT	3 cut(s)	61, 281, 427
HpyCH4IV	ACGT	2 cut(s)	240, 407
HpyF3I	CTNAG	1 cut(s)	166
HpySE526I	ACGT	2 cut(s)	240, 407
Hsp92II	CATG	2 cut(s)	46, 223
HspAI	GCGC	1 cut(s)	228
Kpn2I	TCCGGA	1 cut(s)	283
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	4, 65, 135, 343
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	2 cut(s)	240, 407
MaeIII	GTNAC	2 cut(s)	241, 427
MalI	GATC	4 cut(s)	6, 67, 137, 345
MboI	GATC	4 cut(s)	4, 65, 135, 343
MboII	GAAGA	1 cut(s)	309
MflI	RGATCY	2 cut(s)	4, 65
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	1 cut(s)	385
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	4 cut(s)	110, 217, 442, 479
MmeI	TCCRAC	3 cut(s)	117, 222, 261
Mox20I	TGGCCA	1 cut(s)	123
MroI	TCCGGA	1 cut(s)	283
MscI	TGGCCA	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	123
MspI	CCGG	1 cut(s)	284
MvnI	CGCG	2 cut(s)	228, 276
NdeII	GATC	4 cut(s)	4, 65, 135, 343
NlaIII	CATG	2 cut(s)	46, 223
NlaIV	GGNNCC	3 cut(s)	6, 67, 438
PaeR7I	CTCGAG	1 cut(s)	98
PceI	AGGCCT	2 cut(s)	171, 314
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 273, 297
PfeI	GAWTC	1 cut(s)	416
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	4 cut(s)	109, 217, 442, 478
PpsI	GAGTC	4 cut(s)	109, 217, 442, 478
PpuMI	RGGWCCY	1 cut(s)	437
Psp1406I	AACGTT	1 cut(s)	407
Psp5II	RGGWCCY	1 cut(s)	437
PspFI	CCCAGC	1 cut(s)	144
PspN4I	GGNNCC	3 cut(s)	6, 67, 438
PspPI	GGNCC	3 cut(s)	46, 286, 437
PspPPI	RGGWCCY	1 cut(s)	437
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	4, 65
SalI	GTCGAC	1 cut(s)	299
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	4 cut(s)	4, 65, 135, 343
Sau96I	GGNCC	3 cut(s)	46, 286, 437
SchI	GAGTC	4 cut(s)	110, 217, 442, 479
SetI	ASST	5 cut(s)	23, 99, 195, 243, 410
SfaNI	GCATC	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	3 cut(s)	46, 286, 437
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	385
SseBI	AGGCCT	2 cut(s)	171, 314
SsiI	CCGC	3 cut(s)	49, 216, 274
SspMI	CTAG	1 cut(s)	467
StuI	AGGCCT	2 cut(s)	171, 314
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	3 cut(s)	61, 281, 427
TaiI	ACGT	2 cut(s)	243, 410
TaqI	TCGA	4 cut(s)	81, 99, 114, 300
TasI	AATT	1 cut(s)	385
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	416
TscAI	CASTG	1 cut(s)	384
TspDTI	ATGAA	1 cut(s)	348
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	3 cut(s)	46, 286, 437
XapI	RAATTY	1 cut(s)	385
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	2 cut(s)	74, 300
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.