Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Reverse (-)

58180082 .. 58180348

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG382900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGACTCGCGCCGTCTCCGACGTTACCCAGACCCACTCCGTCCTCAAAGCCCTCGGAGACCGTCCCGACCACGAGGCCATCGACATGGCCAAGGCCTCTTCCCCCAACCACACCCTCAACGGCGATCCAAACTCTCCTTCATCACCCCCTCCAAAATCACTGCCGAATTCTCTCACCACAACCCCAACGTTGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCCGACTCCATCATCCAGCCTCCTAGAGTCCAAGTGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

88

Amino Acids

9.12

Weight (kDa)

5.45

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AclI	AACGTT	1 cut(s)	188
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	2 cut(s)	121, 153
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
Alw26I	GTCTC	2 cut(s)	19, 51
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	3 cut(s)	75, 87, 93
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	135, 166
AvaII	GGWCC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	89
BauI	CACGAG	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	2 cut(s)	86, 241
BceAI	ACGGC	2 cut(s)	136, 222
BcoDI	GTCTC	2 cut(s)	19, 51
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	52, 90
BseDI	CCNNGG	2 cut(s)	52, 90
BseGI	GGATG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	77, 89, 95
BslFI	GGGAC	1 cut(s)	48
BsmAI	GTCTC	2 cut(s)	19, 51
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	48
BsnI	GGCC	3 cut(s)	77, 89, 95
Bso31I	GGTCTC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	124
BspANI	GGCC	3 cut(s)	77, 89, 95
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	52, 90
BssMI	GATC	1 cut(s)	124
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	236
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	2 cut(s)	19, 51
BstMBI	GATC	1 cut(s)	124
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuRI	GGCC	3 cut(s)	77, 89, 95
BtsCI	GGATG	1 cut(s)	236
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	158
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	218
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	6 cut(s)	50, 77, 89, 95, 212, 243
CviKI_1	RGCY	6 cut(s)	50, 77, 89, 95, 212, 243
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	90
Eco147I	AGGCCT	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	1 cut(s)	88
FaiI	YATR	1 cut(s)	86
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	77, 89, 95
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	4 cut(s)	4, 197, 229, 251
HphI	GGTGA	2 cut(s)	135, 166
Hpy188I	TCNGA	2 cut(s)	19, 56
Hpy188III	TCNNGA	1 cut(s)	65
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	2 cut(s)	21, 188
HpySE526I	ACGT	2 cut(s)	21, 188
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	124
LpnPI	CCDG	3 cut(s)	41, 234, 253
Lsp1109I	GCAGC	1 cut(s)	221
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	2 cut(s)	21, 188
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	1 cut(s)	166
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	2 cut(s)	223, 260
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	7 cut(s)	53, 62, 67, 106, 125, 159, 254
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	89
MvnI	CGCG	1 cut(s)	9
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	219
PceI	AGGCCT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	2 cut(s)	223, 259
PpsI	GAGTC	2 cut(s)	223, 259
PpuMI	RGGWCCY	1 cut(s)	218
Psp1406I	AACGTT	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	218
PspPPI	RGGWCCY	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	83
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	2 cut(s)	223, 260
SetI	ASST	3 cut(s)	24, 191, 214
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	1 cut(s)	166
SseBI	AGGCCT	1 cut(s)	95
SspMI	CTAG	1 cut(s)	248
StuI	AGGCCT	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	2 cut(s)	24, 191
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	197
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	129
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	166
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.