Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Forward (+)

71617353 .. 71633188

Gene Structure 15836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG446700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGATCGATGACCCCAGCAACCATCCTCATCCTCAGGCTTCCTCAACTAGATGCCCCCACCTCTCCTACCCCAAAGCCATTGTCGCCATGACCCACACCGTCTCCGAATTCGTCCAGACCCGCTCCTTCCTCAACGCCCTTGACGACCGTCCCGACCACGAGACCGTCGACACCGCCAAGGGCAAGCTCACCCACATCGAGTCCACTCTCTCCAAGAAGCTCGAGGACCTCGTCCTAGCCTATATTGTTAACGGCGACTTGCATAACAAAACCAATAAGAAGAAGAAGAACAAGAAATCCAAAACCGACACAGCCGCCGTGATTCCCACCTTCACCATAGCCATCACCGGTTCCATCATTCACAACGCTCAGTTCCTCGAACTCGCCACTCGGTTATTTCTCACCACAACCCATGGTCGTCATCCACTCGATCTAGAGCTACTATCTCCTCGTCAAGACGTATATATATGTATTCGAACTATGAGGAAGAAAGAGAAGCTTGTACCTTTTGGAGGACTCAGTTCAAAACTGAATTGGATCAGCCCCAAAATCCAAAATCAAATTAGATCAGCCCCGAAATTCAAACTTGTCCTCTCCTTCACCGACAAGGTCAAGGACTACGGTACCAGCCACAAGCTGCAAATTGGGATGCAAAACGCTGCCGTCTTTCCAGACCCGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

227

Amino Acids

25.47

Weight (kDa)

9.65

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	623
AccB1I	GGYRCC	1 cut(s)	623
AccBSI	CCGCTC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	3 cut(s)	121, 174, 315
AclWI	GGATC	1 cut(s)	545
AcsI	RAATTY	2 cut(s)	107, 578
AfaI	GTAC	2 cut(s)	504, 625
AfiI	CCNNNNNNNGG	1 cut(s)	512
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	525, 583
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	5 cut(s)	187, 220, 439, 499, 637
AluI	AGCT	5 cut(s)	187, 220, 439, 499, 637
Alw26I	GTCTC	2 cut(s)	106, 155
AlwI	GGATC	1 cut(s)	545
Ama87I	CYCGRG	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	637, 659
ApoI	RAATTY	2 cut(s)	107, 578
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AsiGI	ACCGGT	1 cut(s)	347
Asp718I	GGTACC	1 cut(s)	623
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	5 cut(s)	181, 325, 337, 394, 592
AsuII	TTCGAA	1 cut(s)	475
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	33
BaeI	ACNNNNGTAYC	2 cut(s)	607, 640
BanI	GGYRCC	1 cut(s)	623
BauI	CACGAG	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	624, 646
BccI	CCATC	3 cut(s)	30, 350, 362
BceAI	ACGGC	3 cut(s)	268, 302, 647
BcoDI	GTCTC	2 cut(s)	106, 155
BfaI	CTAG	3 cut(s)	48, 236, 434
BisI	GCNGC	3 cut(s)	315, 638, 660
BlsI	GCNGC	3 cut(s)	316, 639, 661
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	352, 625
BmsI	GCATC	2 cut(s)	41, 639
BoxI	GACNNNNGTC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	475
Bsa29I	ATCGAT	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	177, 412
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse118I	RCCGGY	1 cut(s)	347
Bse21I	CCTNAGG	1 cut(s)	33
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	177, 412
BseGI	GGATG	4 cut(s)	22, 28, 421, 654
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMII	CTCAG	3 cut(s)	47, 383, 532
BseRI	GAGGAG	1 cut(s)	438
BseXI	GCAGC	2 cut(s)	624, 646
BseYI	CCCAGC	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	623
BshTI	ACCGGT	1 cut(s)	347
BshVI	ATCGAT	1 cut(s)	6
BsiEI	CGRYCG	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	2 cut(s)	106, 155
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	475
Bsp143I	GATC	5 cut(s)	3, 430, 537, 566, 678
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	3 cut(s)	121, 174, 315
BspCNI	CTCAG	3 cut(s)	46, 382, 531
BspDI	ATCGAT	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	352, 625
BspPI	GGATC	1 cut(s)	545
BspT104I	TTCGAA	1 cut(s)	475
BspT107I	GGYRCC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	177, 412
BssMI	GATC	5 cut(s)	3, 430, 537, 566, 678
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	177, 412
Bst2BI	CACGAG	1 cut(s)	158
Bst4CI	ACNGT	4 cut(s)	100, 149, 166, 623
BstBI	TTCGAA	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	3 cut(s)	33, 369, 518
BstDSI	CCRYGG	1 cut(s)	412
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	4 cut(s)	22, 28, 421, 654
BstKTI	GATC	5 cut(s)	6, 433, 540, 569, 681
BstMAI	GTCTC	2 cut(s)	106, 155
BstMBI	GATC	5 cut(s)	3, 430, 537, 566, 678
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstPAI	GACNNNNGTC	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	624, 646
Bsu15I	ATCGAT	1 cut(s)	6
Bsu36I	CCTNAGG	1 cut(s)	33
BsuTUI	ATCGAT	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	412
BtsCI	GGATG	4 cut(s)	22, 28, 421, 654
Cac8I	GCNNGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	226
ClaI	ATCGAT	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	503, 624
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	2 cut(s)	88, 413
CviQI	GTAC	2 cut(s)	503, 624
DdeI	CTNAG	3 cut(s)	33, 369, 518
DpnI	GATC	5 cut(s)	5, 432, 539, 568, 680
DpnII	GATC	5 cut(s)	3, 430, 537, 566, 678
Eco130I	CCWWGG	2 cut(s)	177, 412
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	226
Eco81I	CCTNAGG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	107
EcoT14I	CCWWGG	2 cut(s)	177, 412
ErhI	CCWWGG	2 cut(s)	177, 412
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	2 cut(s)	91, 416
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	2 cut(s)	87, 412
FauI	CCCGC	1 cut(s)	128
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	315, 638, 660
FokI	GGATG	4 cut(s)	9, 15, 408, 661
Fsp4HI	GCNGC	3 cut(s)	315, 638, 660
FspBI	CTAG	3 cut(s)	48, 236, 434
GluI	GCNGC	3 cut(s)	315, 638, 660
GsaI	CCCAGC	1 cut(s)	18
HapII	CCGG	1 cut(s)	348
Hin1II	CATG	2 cut(s)	91, 416
HincII	GTYRAC	2 cut(s)	169, 250
HindII	GTYRAC	2 cut(s)	169, 250
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	3 cut(s)	200, 322, 516
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	5 cut(s)	181, 325, 337, 394, 592
Hpy166II	GTNNAC	3 cut(s)	169, 204, 250
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	5 cut(s)	115, 152, 434, 455, 671
Hpy8I	GTNNAC	3 cut(s)	169, 204, 250
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	136, 340, 607
HpyCH4III	ACNGT	4 cut(s)	100, 149, 166, 623
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	3 cut(s)	262, 640, 652
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	3 cut(s)	33, 369, 518
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	2 cut(s)	91, 416
KpnI	GGTACC	1 cut(s)	627
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	3, 430, 537, 566, 678
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	5 cut(s)	20, 28, 128, 361, 640
Lsp1109I	GCAGC	2 cut(s)	624, 646
LweI	GCATC	2 cut(s)	41, 639
MaeI	CTAG	3 cut(s)	48, 236, 434
MaeII	ACGT	1 cut(s)	459
MalI	GATC	5 cut(s)	5, 432, 539, 568, 680
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	5 cut(s)	3, 430, 537, 566, 678
MboII	GAAGA	4 cut(s)	292, 295, 298, 499
MluCI	AATT	5 cut(s)	107, 532, 561, 578, 642
MlyI	GAGTC	2 cut(s)	209, 510
MseI	TTAA	1 cut(s)	249
MspI	CCGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	5 cut(s)	3, 430, 537, 566, 678
NlaIII	CATG	2 cut(s)	91, 416
NlaIV	GGNNCC	2 cut(s)	352, 625
NspV	TTCGAA	1 cut(s)	475
PaeR7I	CTCGAG	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	4 cut(s)	141, 150, 165, 228
PfeI	GAWTC	1 cut(s)	322
PflFI	GACNNNGTC	2 cut(s)	230, 608
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	316, 639, 661
PleI	GAGTC	2 cut(s)	208, 510
PpsI	GAGTC	2 cut(s)	208, 510
PpuMI	RGGWCCY	1 cut(s)	226
PshAI	GACNNNNGTC	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	352, 625
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
PspXI	VCTCGAGB	1 cut(s)	221
PsyI	GACNNNGTC	2 cut(s)	230, 608
RsaI	GTAC	2 cut(s)	504, 625
RsaNI	GTAC	2 cut(s)	503, 624
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	3 cut(s)	315, 638, 660
Sau3AI	GATC	5 cut(s)	3, 430, 537, 566, 678
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	2 cut(s)	209, 510
SfaNI	GCATC	2 cut(s)	41, 639
Sfr274I	CTCGAG	1 cut(s)	221
SfuI	TTCGAA	1 cut(s)	475
SinI	GGWCC	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	5 cut(s)	107, 532, 561, 578, 642
SsiI	CCGC	3 cut(s)	121, 174, 315
SspMI	CTAG	3 cut(s)	48, 236, 434
StyI	CCWWGG	2 cut(s)	177, 412
TaaI	ACNGT	4 cut(s)	100, 149, 166, 623
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	7 cut(s)	6, 168, 198, 222, 378, 429, 475
TasI	AATT	5 cut(s)	107, 532, 561, 578, 642
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseI	GCWGC	2 cut(s)	637, 659
Tth111I	GACNNNGTC	2 cut(s)	230, 608
VpaK11BI	GGWCC	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	2 cut(s)	107, 578
XbaI	TCTAGA	1 cut(s)	433
XhoI	CTCGAG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	3 cut(s)	48, 236, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.