Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Reverse (-)

34065294 .. 34065677

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0195800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCACTTCCTTTTTGAAAATTTAGTGGGCAAGTATGGTATCTGTGATCGTGTTTTCGATGAAAATGGCCCCTACAACCCGGATGTTATGCCATTTGCTGTCAAGACTATTGAGCATCATTTGTCATTGTCAAGGAGGGAACCTTCAGGTTTCAGGGCATCATTTGTCATTGTCAGTCAACTAAGTAGGGCGCTGAGCCAATCAGGTATCACCGCATGTCAAACTGTGTCAGACACTCCCATCCTGCCACCAGTAGGTCGTACACTATTCGGTGGTGCTGAGTCTAGCAAGCCAAGACGCCCGGTGGTCATCAAGAATGCTGAAGCAAGAGCAGTCAGTGATGAGGACTCCCTTTCTCTTGTTTCGGTCGAGGTCGAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

127

Amino Acids

13.86

Weight (kDa)

5.89

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	2 cut(s)	129, 342
AcyI	GRCGYC	1 cut(s)	298
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	17
AoxI	GGCC	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	68
AsuC2I	CCSGG	2 cut(s)	80, 302
AsuHPI	GGTGA	1 cut(s)	202
BccI	CCATC	1 cut(s)	248
BcnI	CCSGG	2 cut(s)	80, 302
BfaI	CTAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	194
BlpI	GCTNAGC	1 cut(s)	194
Bme1390I	CCNGG	2 cut(s)	80, 302
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	70, 141
BmrFI	CCNGG	2 cut(s)	80, 302
BmsI	GCATC	2 cut(s)	124, 167
Bpu1102I	GCTNAGC	1 cut(s)	194
BpuMI	CCSGG	2 cut(s)	80, 302
BsaHI	GRCGYC	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	251
BseGI	GGATG	2 cut(s)	88, 240
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	2 cut(s)	185, 270
BseNI	ACTGG	1 cut(s)	251
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	369
BsiSI	CCGG	2 cut(s)	80, 302
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	46
Bsp1720I	GCTNAGC	1 cut(s)	194
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	2 cut(s)	186, 271
BspLI	GGNNCC	2 cut(s)	70, 141
BsrI	ACTGG	1 cut(s)	251
BssMI	GATC	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	226
BstACI	GRCGYC	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	3 cut(s)	182, 194, 279
BstF5I	GGATG	2 cut(s)	88, 240
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstMCI	CGRYCG	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	78, 300
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	88, 240
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	290
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	68
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	1 cut(s)	216
CviJI	RGCY	3 cut(s)	69, 198, 292
CviKI_1	RGCY	3 cut(s)	69, 198, 292
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	3 cut(s)	182, 194, 279
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	129, 342
FaeI	CATG	1 cut(s)	219
FaiI	YATR	3 cut(s)	36, 89, 217
FatI	CATG	1 cut(s)	215
FokI	GGATG	2 cut(s)	95, 227
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	2 cut(s)	80, 302
HgaI	GACGC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	219
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	179
HindII	GTYRAC	1 cut(s)	179
HinfI	GANTC	2 cut(s)	281, 347
HpaII	CCGG	2 cut(s)	80, 302
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	2 cut(s)	179, 263
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	103, 313, 376
Hpy8I	GTNNAC	2 cut(s)	179, 263
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	3 cut(s)	182, 194, 279
Hsp92I	GRCGYC	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	219
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	46
LpnPI	CCDG	7 cut(s)	93, 132, 139, 189, 257, 264, 315
LweI	GCATC	2 cut(s)	124, 167
MaeI	CTAG	1 cut(s)	285
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	2 cut(s)	290, 341
MnlI	CCTC	3 cut(s)	129, 337, 364
MspI	CCGG	2 cut(s)	80, 302
MspR9I	CCNGG	2 cut(s)	80, 302
Mva1269I	GAATGC	1 cut(s)	322
NciI	CCSGG	2 cut(s)	80, 302
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	219
NlaIV	GGNNCC	2 cut(s)	70, 141
NspI	RCATGY	1 cut(s)	219
PctI	GAATGC	1 cut(s)	322
PleI	GAGTC	2 cut(s)	289, 341
PpsI	GAGTC	2 cut(s)	289, 341
PspN4I	GGNNCC	2 cut(s)	70, 141
PspPI	GGNCC	1 cut(s)	68
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	2 cut(s)	290, 341
ScrFI	CCNGG	2 cut(s)	80, 302
SetI	ASST	5 cut(s)	145, 151, 208, 259, 375
SfaNI	GCATC	2 cut(s)	124, 167
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	78, 300
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	3 cut(s)	57, 369, 375
TaqII	GACCGA	1 cut(s)	355
TasI	AATT	1 cut(s)	19
TscAI	CASTG	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	343
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	219
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.