Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Reverse (-)

409036 .. 411323

Gene Structure 2288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG003000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGGATCCGAACCCGTCCAACTTCCCCATCCTCTCCTACGTCATGGACCGCCTTTCCACCGTAGGATCCAAGTCCGCCGTCGACGACATCTCCGACCTCGAGTCCATTCAAATCGACGATGGCCAGCCCCAGTTGATCAAACCCCACCAACCATCCTCAGCCCTCCTCCACCAGATGCCCCACCTCTCCGACCCCAAAGTCATCGCCGCCATGACCCGCGCCGTCTCCGACGTCGCCCAGACCCGCTCCGTCCTCAACGCCCTCGGCGACCGTCCCGACCACGAGGCCGTCGACGCCGCCAAGGCCAAGCTCGCCCACATCGAGTCCACTCTCTCCAAGAAGCTCGAGGACCTCGTCCTCTCCCCCCGCCCCTCCGACGTCGACCGCTTCCAGTGGCGGGCCCACCTCGCCGAGCGCGAGCAGGAGTGCCGCGACGCCGCCGAGAAAGAGAAGCGGGACTGCAAGGCCATTCTCCAGCTCGACGAGCTCCACGCCTCCTACGAGAAGCTTCTCAAGGACGCCGAGGATAGGCTCAACAAGATTTATCGCTCCGCCGAGGACGGAGTCGTCGAGGAGCCGCCGCCGGTCACCGACCAAATCCATGAGGAGGTCGTCGGCATTCTGCAGCAGGCTTCCGGGACTGCGCTCGACCGGATCAACCTCTCCGGCCGCCGCCTCCGGTGCTTGCCGGAGGCATTTGGCAGGATCACCGGATTGCTACACCTTGATCTTTCCAACAATGAGCTCCAGGTTATTCCTGATACAATATCTGGATTGGAGAAGCTACAAGAGCTTAACTTGTCTTCCAATCTGTTGGAGTCACTGCCCGACACCATTGGCCTGCTGCAAAATCTGAAGGTTCTGAATGTCTCCGGCAACAAGCTGGCTGCTCTTCCTGACTCTATCTGTCATTGCAGGTCATTGGTGGAGTTGGATGTGAGTTTCAACAACCTCACATACTTGCCAACCAACATTGGTTATGAGTTGGTCAATCTTCAGAAGCTTTCCATGCAATTAAACAAAATCCGTTCCCTTCCCACCTCTGTTTGTGAGCTGAGGTCTCTGCGCTCCTTGGATGCTCACTTCAATGAGCTTCGGGGCCTTCCACTGGCTTTTGGCCGATTGGCCAATCTCCAAAGTCTGAACCTTGCCAGCAACTTTACTGACCTTACTGAGCTGCCCGATACTTTTGGTGATCTAACCAACCTCAAGGAACTTGATCTCAGCAACAATCAGATTCATGCTCTGCCAGATACATTTGGCCGCCTTGACAATTTGACCAAACTTAACTTGGACGGAAACCCTCTTTTGCTTCCACCCTCTGATATAGTTCAACAAGGTGTTGATGCTGTCAAGCTCTTTATGGCCAAGAGGTGGTTGGAGATACTGGTGGAAGAAGAAAGGAAGAGCATGCTTCAAGTACAAGAAGAAGCAGAAACTGGATGGTTGACACGCAGCACTTCCTGGTTGACACGCAGCCTTTCAGGTGTTTCTGGATATCTGTCTCCAAGATCTCCAAGAGACCCGATTCTTGATCAGCAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

515

Amino Acids

57.31

Weight (kDa)

5.03

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	218 - 272	4.6e-10	Leucine rich repeat
LRR_8	PF13855	261 - 318	1.8e-09	Leucine rich repeat
LRR_14	PF23598	262 - 314	2.5e-06	Leucine-rich repeat region
LRR_8	PF13855	306 - 365	2.1e-07	Leucine rich repeat
LRR_14	PF23598	318 - 385	3.9e-07	Leucine-rich repeat region
LRR_14	PF23598	373 - 434	1.7e-07	Leucine-rich repeat region
LRR_8	PF13855	377 - 436	2.2e-11	Leucine rich repeat
LRR_4	PF12799	401 - 437	4.5e-07	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	197, 566
AatII	GACGTC	2 cut(s)	234, 381
Acc36I	ACCTGC	1 cut(s)	906
AccB7I	CCANNNNNTGG	1 cut(s)	1374
AccBSI	CCGCTC	1 cut(s)	246
AccI	GTMKAC	3 cut(s)	81, 291, 381
AccII	CGCG	3 cut(s)	219, 417, 432
AclWI	GGATC	5 cut(s)	12, 60, 73, 662, 713
AcoI	YGGCCR	6 cut(s)	121, 667, 1117, 1125, 1261, 1365
AcuI	CTGAAG	2 cut(s)	875, 980
AcyI	GRCGYC	5 cut(s)	231, 294, 378, 435, 519
AfaI	GTAC	1 cut(s)	1422
AfiI	CCNNNNNNNGG	5 cut(s)	397, 528, 607, 1108, 1374
AgsI	TTSAA	5 cut(s)	110, 946, 1087, 1334, 1418
AhdI	GACNNNNNGTC	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	747, 1463
Alw21I	GWGCWC	2 cut(s)	489, 747
Alw26I	GTCTC	5 cut(s)	229, 874, 1065, 1509, 1515
AlwI	GGATC	5 cut(s)	12, 60, 73, 662, 713
AlwNI	CAGNNNCTG	1 cut(s)	1439
Ama87I	CYCGRG	2 cut(s)	98, 344
ApaI	GGGCCC	1 cut(s)	403
ApeKI	GCWGC	7 cut(s)	625, 844, 887, 1177, 1455, 1476, 1540
AspLEI	GCGC	4 cut(s)	221, 417, 646, 1068
AspS9I	GGNCC	5 cut(s)	46, 349, 399, 400, 1099
AsuC2I	CCSGG	1 cut(s)	637
AsuHPI	GGTGA	3 cut(s)	580, 700, 1205
AvaI	CYCGRG	2 cut(s)	98, 344
AvaII	GGWCC	2 cut(s)	46, 349
BaeGI	GKGCMC	1 cut(s)	403
BalI	TGGCCA	3 cut(s)	123, 1127, 1367
BamHI	GGATCC	2 cut(s)	4, 65
BanII	GRGCYC	3 cut(s)	403, 489, 747
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	795
Bbv12I	GWGCWC	2 cut(s)	489, 747
BbvCI	CCTCAGC	2 cut(s)	157, 1055
BbvI	GCAGC	6 cut(s)	637, 831, 874, 1164, 1467, 1488
BccI	CCATC	4 cut(s)	35, 113, 160, 1437
BceAI	ACGGC	3 cut(s)	62, 206, 272
BciT130I	CCWGG	2 cut(s)	749, 1465
BclI	TGATCA	2 cut(s)	135, 1534
BcnI	CCSGG	1 cut(s)	637
BcoDI	GTCTC	5 cut(s)	229, 874, 1065, 1509, 1515
BfmI	CTRYAG	1 cut(s)	623
BfuAI	ACCTGC	1 cut(s)	906
BglI	GCCNNNNNGGC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	1511
Bme1390I	CCNGG	3 cut(s)	637, 749, 1465
Bme18I	GGWCC	2 cut(s)	46, 349
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmeT110I	CYCGRG	2 cut(s)	98, 344
BmgT120I	GGNCC	5 cut(s)	46, 349, 399, 400, 1099
BmiI	GGNNCC	5 cut(s)	6, 67, 401, 576, 1100
BmrFI	CCNGG	3 cut(s)	637, 749, 1465
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	3 cut(s)	165, 1066, 1336
BmuI	ACTGGG	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	795
BpmI	CTGGAG	2 cut(s)	458, 731
Bpu10I	CCTNAGC	2 cut(s)	157, 1055
BpuEI	CTTGAG	2 cut(s)	497, 1193
BpuMI	CCSGG	1 cut(s)	637
BsaHI	GRCGYC	5 cut(s)	231, 294, 378, 435, 519
BsaI	GGTCTC	2 cut(s)	1065, 1515
BsaJI	CCNNGG	5 cut(s)	262, 300, 522, 555, 1071
BsaWI	WCCGGW	3 cut(s)	651, 678, 710
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	5 cut(s)	397, 528, 607, 1108, 1374
Bse118I	RCCGGY	1 cut(s)	583
Bse1I	ACTGG	5 cut(s)	130, 391, 1113, 1392, 1444
Bse3DI	GCAATG	1 cut(s)	910
BseBI	CCWGG	2 cut(s)	749, 1465
BseDI	CCNNGG	5 cut(s)	262, 300, 522, 555, 1071
BseGI	GGATG	5 cut(s)	27, 152, 940, 1081, 1448
BseLI	CCNNNNNNNGG	5 cut(s)	397, 528, 607, 1108, 1374
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	4 cut(s)	171, 1046, 1164, 1237
BseNI	ACTGG	5 cut(s)	130, 391, 1113, 1392, 1444
BseRI	GAGGAG	3 cut(s)	155, 587, 620
BseSI	GKGCMC	1 cut(s)	403
BseX3I	CGGCCG	1 cut(s)	667
BseXI	GCAGC	6 cut(s)	637, 831, 874, 1164, 1467, 1488
Bsh1236I	CGCG	3 cut(s)	219, 417, 432
Bsh1285I	CGRYCG	4 cut(s)	271, 385, 652, 670
BsiEI	CGRYCG	4 cut(s)	271, 385, 652, 670
BsiHKAI	GWGCWC	2 cut(s)	489, 747
BsiHKCI	CYCGRG	2 cut(s)	98, 344
BsiSI	CCGG	8 cut(s)	584, 636, 652, 666, 679, 689, 711, 873
BslFI	GGGAC	3 cut(s)	258, 470, 652
BslI	CCNNNNNNNGG	5 cut(s)	397, 528, 607, 1108, 1374
BsmAI	GTCTC	5 cut(s)	229, 874, 1065, 1509, 1515
BsmBI	CGTCTC	1 cut(s)	229
BsmFI	GGGAC	3 cut(s)	258, 470, 652
BsmI	GAATGC	1 cut(s)	618
Bso31I	GGTCTC	2 cut(s)	1065, 1515
BsoBI	CYCGRG	2 cut(s)	98, 344
Bsp120I	GGGCCC	1 cut(s)	399
Bsp1286I	GDGCHC	3 cut(s)	403, 489, 747
BspCNI	CTCAG	4 cut(s)	170, 1047, 1165, 1236
BspFNI	CGCG	3 cut(s)	219, 417, 432
BspLI	GGNNCC	5 cut(s)	6, 67, 401, 576, 1100
BspMAI	CTGCAG	1 cut(s)	627
BspMI	ACCTGC	1 cut(s)	906
BspPI	GGATC	5 cut(s)	12, 60, 73, 662, 713
BspQI	GCTCTTC	2 cut(s)	897, 1400
BspTNI	GGTCTC	2 cut(s)	1065, 1515
BsrBI	CCGCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	910
BsrFI	RCCGGY	1 cut(s)	583
BsrI	ACTGG	5 cut(s)	130, 391, 1113, 1392, 1444
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	5 cut(s)	262, 300, 522, 555, 1071
BssNI	GRCGYC	5 cut(s)	231, 294, 378, 435, 519
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	2 cut(s)	300, 1071
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	2 cut(s)	749, 1465
Bst4CI	ACNGT	2 cut(s)	61, 272
Bst6I	CTCTTC	2 cut(s)	897, 1400
BstACI	GRCGYC	5 cut(s)	231, 294, 378, 435, 519
BstDEI	CTNAG	4 cut(s)	157, 1055, 1173, 1223
BstEII	GGTNACC	1 cut(s)	586
BstF5I	GGATG	5 cut(s)	27, 152, 940, 1081, 1448
BstFNI	CGCG	3 cut(s)	219, 417, 432
BstHHI	GCGC	4 cut(s)	221, 417, 646, 1068
BstMAI	GTCTC	5 cut(s)	229, 874, 1065, 1509, 1515
BstMCI	CGRYCG	4 cut(s)	271, 385, 652, 670
BstMWI	GCNNNNNNNGC	8 cut(s)	293, 302, 311, 407, 484, 681, 790, 1009
BstNI	CCWGG	2 cut(s)	749, 1465
BstNSI	RCATGY	1 cut(s)	1414
BstPI	GGTNACC	1 cut(s)	586
BstSCI	CCNGG	3 cut(s)	635, 747, 1463
BstSFI	CTRYAG	1 cut(s)	623
BstSLI	GKGCMC	1 cut(s)	403
BstUI	CGCG	3 cut(s)	219, 417, 432
BstV1I	GCAGC	6 cut(s)	637, 831, 874, 1164, 1467, 1488
BstV2I	GAAGAC	1 cut(s)	795
BstX2I	RGATCY	3 cut(s)	4, 65, 1511
BstXI	CCANNNNNNTGG	1 cut(s)	814
BstYI	RGATCY	3 cut(s)	4, 65, 1511
BstZI	CGGCCG	1 cut(s)	667
BtgZI	GCGATG	1 cut(s)	187
BtsCI	GGATG	5 cut(s)	27, 152, 940, 1081, 1448
BtsI	GCAGTG	1 cut(s)	821
BtsIMutI	CAGTG	3 cut(s)	398, 821, 1106
BveI	ACCTGC	1 cut(s)	906
CaiI	CAGNNNCTG	1 cut(s)	1439
CfoI	GCGC	4 cut(s)	221, 417, 646, 1068
Cfr10I	RCCGGY	1 cut(s)	583
Cfr13I	GGNCC	5 cut(s)	46, 349, 399, 400, 1099
CseI	GACGC	3 cut(s)	302, 443, 527
Csp6I	GTAC	1 cut(s)	1421
CviAII	CATG	6 cut(s)	43, 211, 602, 1009, 1241, 1411
CviQI	GTAC	1 cut(s)	1421
DdeI	CTNAG	4 cut(s)	157, 1055, 1173, 1223
DrdI	GACNNNNNNGTC	2 cut(s)	197, 566
DriI	GACNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	2 cut(s)	197, 566
EaeI	YGGCCR	6 cut(s)	121, 667, 1117, 1125, 1261, 1365
EagI	CGGCCG	1 cut(s)	667
Eam1104I	CTCTTC	2 cut(s)	897, 1400
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EarI	CTCTTC	2 cut(s)	897, 1400
EciI	GGCGGA	2 cut(s)	64, 541
Ecl136II	GAGCTC	2 cut(s)	487, 745
EclXI	CGGCCG	1 cut(s)	667
Eco130I	CCWWGG	2 cut(s)	300, 1071
Eco24I	GRGCYC	3 cut(s)	403, 489, 747
Eco31I	GGTCTC	2 cut(s)	1065, 1515
Eco32I	GATATC	1 cut(s)	1499
Eco47I	GGWCC	2 cut(s)	46, 349
Eco52I	CGGCCG	1 cut(s)	667
Eco53kI	GAGCTC	2 cut(s)	487, 745
Eco57I	CTGAAG	2 cut(s)	875, 980
Eco88I	CYCGRG	2 cut(s)	98, 344
Eco91I	GGTNACC	1 cut(s)	586
EcoICRI	GAGCTC	2 cut(s)	487, 745
EcoO109I	RGGNCCY	2 cut(s)	349, 1099
EcoO65I	GGTNACC	1 cut(s)	586
EcoRII	CCWGG	2 cut(s)	747, 1463
EcoRV	GATATC	1 cut(s)	1499
EcoT14I	CCWWGG	2 cut(s)	300, 1071
EcoT38I	GRGCYC	3 cut(s)	403, 489, 747
ErhI	CCWWGG	2 cut(s)	300, 1071
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	6 cut(s)	46, 214, 605, 1012, 1244, 1414
FaqI	GGGAC	3 cut(s)	258, 470, 652
FatI	CATG	6 cut(s)	42, 210, 601, 1008, 1240, 1410
FauI	CCCGC	5 cut(s)	224, 251, 374, 390, 447
FbaI	TGATCA	2 cut(s)	135, 1534
FblI	GTMKAC	3 cut(s)	81, 291, 381
FokI	GGATG	5 cut(s)	14, 139, 947, 1088, 1455
FriOI	GRGCYC	3 cut(s)	403, 489, 747
GlaI	GCGC	4 cut(s)	220, 416, 645, 1067
GsuI	CTGGAG	2 cut(s)	458, 731
HapII	CCGG	8 cut(s)	584, 636, 652, 666, 679, 689, 711, 873
HgaI	GACGC	3 cut(s)	302, 443, 527
HhaI	GCGC	4 cut(s)	221, 417, 646, 1068
Hin1I	GRCGYC	5 cut(s)	231, 294, 378, 435, 519
Hin1II	CATG	6 cut(s)	46, 214, 605, 1012, 1244, 1414
Hin6I	GCGC	4 cut(s)	219, 415, 644, 1066
HinP1I	GCGC	4 cut(s)	219, 415, 644, 1066
HincII	GTYRAC	5 cut(s)	82, 292, 382, 1449, 1470
HindII	GTYRAC	5 cut(s)	82, 292, 382, 1449, 1470
HindIII	AAGCTT	2 cut(s)	506, 1001
HinfI	GANTC	7 cut(s)	101, 323, 564, 818, 899, 1237, 1528
HpaII	CCGG	8 cut(s)	584, 636, 652, 666, 679, 689, 711, 873
HphI	GGTGA	3 cut(s)	580, 700, 1205
Hpy166II	GTNNAC	6 cut(s)	82, 292, 327, 382, 1449, 1470
Hpy188III	TCNNGA	6 cut(s)	275, 758, 771, 896, 1494, 1532
Hpy8I	GTNNAC	6 cut(s)	82, 292, 327, 382, 1449, 1470
HpyAV	CCTTC	3 cut(s)	850, 1043, 1112
HpyCH4III	ACNGT	2 cut(s)	61, 272
HpyCH4IV	ACGT	3 cut(s)	39, 231, 378
HpyCH4V	TGCA	5 cut(s)	462, 625, 847, 915, 1012
HpyF10VI	GCNNNNNNNGC	8 cut(s)	293, 302, 311, 407, 484, 681, 790, 1009
HpyF3I	CTNAG	4 cut(s)	157, 1055, 1173, 1223
HpySE526I	ACGT	3 cut(s)	39, 231, 378
Hsp92I	GRCGYC	5 cut(s)	231, 294, 378, 435, 519
Hsp92II	CATG	6 cut(s)	46, 214, 605, 1012, 1244, 1414
HspAI	GCGC	4 cut(s)	219, 415, 644, 1066
Ksp22I	TGATCA	2 cut(s)	135, 1534
LguI	GCTCTTC	2 cut(s)	897, 1400
LmnI	GCTCC	6 cut(s)	251, 492, 554, 574, 750, 1073
Lsp1109I	GCAGC	6 cut(s)	637, 831, 874, 1164, 1467, 1488
LweI	GCATC	3 cut(s)	165, 1066, 1336
MaeII	ACGT	3 cut(s)	39, 231, 378
MaeIII	GTNAC	2 cut(s)	586, 819
MbiI	CCGCTC	1 cut(s)	246
MboII	GAAGA	7 cut(s)	795, 884, 986, 1406, 1409, 1417, 1439
MflI	RGATCY	3 cut(s)	4, 65, 1511
MhlI	GDGCHC	3 cut(s)	403, 489, 747
MlsI	TGGCCA	3 cut(s)	123, 1127, 1367
MluCI	AATT	2 cut(s)	1013, 1273
MluNI	TGGCCA	3 cut(s)	123, 1127, 1367
MlyI	GAGTC	5 cut(s)	110, 332, 573, 827, 893
MmeI	TCCRAC	9 cut(s)	42, 117, 213, 252, 399, 759, 795, 912, 1359
Mox20I	TGGCCA	3 cut(s)	123, 1127, 1367
MscI	TGGCCA	3 cut(s)	123, 1127, 1367
MseI	TTAA	3 cut(s)	795, 1016, 1287
MslI	CAYNNNNRTG	1 cut(s)	1086
Msp20I	TGGCCA	3 cut(s)	123, 1127, 1367
MspI	CCGG	8 cut(s)	584, 636, 652, 666, 679, 689, 711, 873
MspR9I	CCNGG	3 cut(s)	637, 749, 1465
Mva1269I	GAATGC	1 cut(s)	618
MvaI	CCWGG	2 cut(s)	749, 1465
MvnI	CGCG	3 cut(s)	219, 417, 432
MwoI	GCNNNNNNNGC	8 cut(s)	293, 302, 311, 407, 484, 681, 790, 1009
NciI	CCSGG	1 cut(s)	637
NlaIII	CATG	6 cut(s)	46, 214, 605, 1012, 1244, 1414
NlaIV	GGNNCC	5 cut(s)	6, 67, 401, 576, 1100
NmeAIII	GCCGAG	5 cut(s)	243, 436, 466, 547, 580
NmuCI	GTSAC	2 cut(s)	586, 819
NspI	RCATGY	1 cut(s)	1414
PaeI	GCATGC	1 cut(s)	1414
PaeR7I	CTCGAG	2 cut(s)	98, 344
PciSI	GCTCTTC	2 cut(s)	897, 1400
PcsI	WCGNNNNNNNCGW	8 cut(s)	90, 264, 288, 318, 351, 414, 498, 567
PctI	GAATGC	1 cut(s)	618
PfeI	GAWTC	2 cut(s)	1237, 1528
PflFI	GACNNNGTC	2 cut(s)	353, 563
PflMI	CCANNNNNTGG	1 cut(s)	1374
PfoI	TCCNGGA	1 cut(s)	635
PleI	GAGTC	5 cut(s)	109, 331, 572, 826, 893
PpsI	GAGTC	5 cut(s)	109, 331, 572, 826, 893
PpuMI	RGGWCCY	1 cut(s)	349
Psp124BI	GAGCTC	2 cut(s)	489, 747
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	747, 1463
PspEI	GGTNACC	1 cut(s)	586
PspGI	CCWGG	2 cut(s)	747, 1463
PspN4I	GGNNCC	5 cut(s)	6, 67, 401, 576, 1100
PspOMI	GGGCCC	1 cut(s)	399
PspPI	GGNCC	5 cut(s)	46, 349, 399, 400, 1099
PspPPI	RGGWCCY	1 cut(s)	349
PspXI	VCTCGAGB	2 cut(s)	98, 344
PstI	CTGCAG	1 cut(s)	627
PstNI	CAGNNNCTG	1 cut(s)	1439
PsuI	RGATCY	3 cut(s)	4, 65, 1511
PsyI	GACNNNGTC	2 cut(s)	353, 563
RsaI	GTAC	1 cut(s)	1422
RsaNI	GTAC	1 cut(s)	1421
RseI	CAYNNNNRTG	1 cut(s)	1086
SacI	GAGCTC	2 cut(s)	489, 747
SalI	GTCGAC	3 cut(s)	80, 290, 380
SapI	GCTCTTC	2 cut(s)	897, 1400
SaqAI	TTAA	3 cut(s)	795, 1016, 1287
Sau96I	GGNCC	5 cut(s)	46, 349, 399, 400, 1099
SchI	GAGTC	5 cut(s)	110, 332, 573, 827, 893
ScrFI	CCNGG	3 cut(s)	637, 749, 1465
SduI	GDGCHC	3 cut(s)	403, 489, 747
SfaNI	GCATC	3 cut(s)	165, 1066, 1336
SfcI	CTRYAG	1 cut(s)	623
Sfr274I	CTCGAG	2 cut(s)	98, 344
SgrDI	CGTCGACG	2 cut(s)	80, 290
SinI	GGWCC	2 cut(s)	46, 349
SlaI	CTCGAG	2 cut(s)	98, 344
SmiMI	CAYNNNNRTG	1 cut(s)	1086
SmlI	CTYRAG	4 cut(s)	98, 344, 512, 1208
SmoI	CTYRAG	4 cut(s)	98, 344, 512, 1208
SphI	GCATGC	1 cut(s)	1414
Sse9I	AATT	2 cut(s)	1013, 1273
SstI	GAGCTC	2 cut(s)	489, 747
StyD4I	CCNGG	3 cut(s)	635, 747, 1463
StyI	CCWWGG	2 cut(s)	300, 1071
TaaI	ACNGT	2 cut(s)	61, 272
TaiI	ACGT	3 cut(s)	42, 234, 381
TasI	AATT	2 cut(s)	1013, 1273
TatI	WGTACW	1 cut(s)	1420
TauI	GCSGC	9 cut(s)	209, 299, 432, 440, 580, 583, 672, 675, 1266
TfiI	GAWTC	2 cut(s)	1237, 1528
Tru1I	TTAA	3 cut(s)	795, 1016, 1287
Tru9I	TTAA	3 cut(s)	795, 1016, 1287
TscAI	CASTG	3 cut(s)	398, 828, 1113
TseFI	GTSAC	2 cut(s)	586, 819
TseI	GCWGC	7 cut(s)	625, 844, 887, 1177, 1455, 1476, 1540
Tsp45I	GTSAC	2 cut(s)	586, 819
TspDTI	ATGAA	1 cut(s)	1229
TspGWI	ACGGA	4 cut(s)	238, 576, 1016, 1311
TspRI	CASTG	3 cut(s)	398, 828, 1113
Tth111I	GACNNNGTC	2 cut(s)	353, 563
Van91I	CCANNNNNTGG	1 cut(s)	1374
VpaK11BI	GGWCC	2 cut(s)	46, 349
XceI	RCATGY	1 cut(s)	1414
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1288, 1375
XhoI	CTCGAG	2 cut(s)	98, 344
XmiI	GTMKAC	3 cut(s)	81, 291, 381
ZraI	GACGTC	2 cut(s)	232, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.