Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Reverse (-)

29216897 .. 29221196

Gene Structure 4300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0296700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCGGAGCACTTGGCTTCGATATTCGGAACCGAGAAGGACCGGGTGAACTGCCCGTTCTATTTCAAGATCGGCGCGTGCCGTCACGGCGACCGGTGCTCCCGTCTCCACAACCGGCCGACGATCAGCCCGACTCTGCTCCTCTCCAACATGTACCAGCGCCCCGACATGATCACCCCCGGCGTCGACCCCCAGGGCCAGCCCATCGACCCCCGCAAGATCCAGGACCATTTCGAGGACTTCTACGAGGACATCTTCGAGGAGCTCGACAAGTTCGGCGAGATTGAGAGCCTCAACGTCTGCGACAATCTCGCCGATCACATGATCGGCAACGTCTACGTCCAGTTCAAGGAGGAGGACCAGGCCGCCGCCGCCCTCCAGGCCTTGCAAGGGAGGTTCTATAACGGCCGCCCTATTATCGCCGACTTCTCGCCGGTGACGGATTTCCGGGAAGCCACGTGTCGCCAGTTCGAGGAGAACAACTGCAATCGAGGCGGCTACTGTAATTTTATGCACGTCAAGCTGATTGGGAGGGAATTGAGGAGGAAGCTGTATGGGAGGTACCGCGGGTATAGGGCTAGCCGGAGCCGGAGCCGGAGTTTGAGCCCGCGGAACCGGAGGGATAAGGATAGGGATTATGATAAACGGGACTACCGGGACAGAGATTATAGAGGGAATGGGAGGAGAAGCAAGGATAGGTATGACAGGGACAGGGACAGAGACAGTGGGAGGAGAAGACATAGCAGTCCCAGGCGGAGCAGAACCAGGAGCAGGAGCCCCGTGGCGGCAGTGAGGGAAGGGAGCGAAGAACGCCGAGCTAGGATTGAGCAGTGGAATCGAGAAAGGGAGGGGAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

286

Amino Acids

33.93

Weight (kDa)

9.63

Isoelectric Point (pI)

67.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	14 - 38	1.2e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
RRM_1	PF00076	83 - 139	1.6e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	744
Acc65I	GGTACC	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	561
AccI	GTMKAC	2 cut(s)	186, 336
AccII	CGCG	3 cut(s)	77, 567, 610
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	2 cut(s)	116, 406
AcvI	CACGTG	1 cut(s)	459
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	155, 563
AfiI	CCNNNNNNNGG	6 cut(s)	235, 349, 390, 472, 771, 784
AflIII	ACRYGT	2 cut(s)	150, 458
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	67, 349
AjiI	CACGTC	1 cut(s)	517
AjnI	CCWGG	6 cut(s)	192, 222, 360, 378, 749, 764
AluBI	AGCT	5 cut(s)	265, 523, 550, 818, 856
AluI	AGCT	5 cut(s)	265, 523, 550, 818, 856
Alw21I	GWGCWC	3 cut(s)	12, 101, 267
Alw26I	GTCTC	2 cut(s)	110, 714
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	5 cut(s)	116, 196, 363, 381, 406
AsiGI	ACCGGT	1 cut(s)	93
Asp718I	GGTACC	1 cut(s)	561
AspLEI	GCGC	2 cut(s)	77, 162
AspS9I	GGNCC	4 cut(s)	40, 196, 226, 358
AsuC2I	CCSGG	4 cut(s)	44, 180, 449, 656
AsuHPI	GGTGA	3 cut(s)	58, 166, 448
AsuNHI	GCTAGC	1 cut(s)	578
AvaII	GGWCC	3 cut(s)	40, 226, 358
BanI	GGYRCC	1 cut(s)	561
BanII	GRGCYC	3 cut(s)	267, 608, 779
BbrPI	CACGTG	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	742
Bbv12I	GWGCWC	3 cut(s)	12, 101, 267
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	3 cut(s)	66, 103, 421
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BciT130I	CCWGG	6 cut(s)	194, 224, 362, 380, 751, 766
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	4 cut(s)	44, 180, 449, 656
BcoDI	GTCTC	2 cut(s)	110, 714
BfaI	CTAG	2 cut(s)	579, 819
BfoI	RGCGCY	1 cut(s)	163
BglI	GCCNNNNNGGC	2 cut(s)	87, 380
BisI	GCNGC	6 cut(s)	366, 369, 372, 409, 496, 786
BlsI	GCNGC	6 cut(s)	367, 370, 373, 410, 497, 787
Bme18I	GGWCC	3 cut(s)	40, 226, 358
BmgBI	CACGTC	1 cut(s)	517
BmgT120I	GGNCC	4 cut(s)	40, 196, 226, 358
BmiI	GGNNCC	6 cut(s)	31, 563, 587, 593, 614, 776
BmtI	GCTAGC	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	742
BpmI	CTGGAG	1 cut(s)	362
BpuMI	CCSGG	4 cut(s)	44, 180, 449, 656
BsaAI	YACGTR	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	7 cut(s)	178, 192, 193, 565, 608, 749, 780
BsaWI	WCCGGW	2 cut(s)	93, 615
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 583, 613
Bsc4I	CCNNNNNNNGG	6 cut(s)	235, 349, 390, 472, 771, 784
Bse118I	RCCGGY	3 cut(s)	93, 114, 433
Bse1I	ACTGG	2 cut(s)	343, 466
BseBI	CCWGG	6 cut(s)	194, 224, 362, 380, 751, 766
BseDI	CCNNGG	7 cut(s)	178, 192, 193, 565, 608, 749, 780
BseLI	CCNNNNNNNGG	6 cut(s)	235, 349, 390, 472, 771, 784
BseNI	ACTGG	2 cut(s)	343, 466
BseRI	GAGGAG	7 cut(s)	131, 275, 368, 488, 556, 697, 745
BseX3I	CGGCCG	2 cut(s)	116, 406
Bsh1236I	CGCG	3 cut(s)	77, 567, 610
Bsh1285I	CGRYCG	3 cut(s)	94, 119, 409
BshFI	GGCC	5 cut(s)	118, 198, 365, 383, 408
BshNI	GGYRCC	1 cut(s)	561
BshTI	ACCGGT	1 cut(s)	93
BsiEI	CGRYCG	3 cut(s)	94, 119, 409
BsiHKAI	GWGCWC	3 cut(s)	12, 101, 267
BslFI	GGGAC	5 cut(s)	662, 671, 722, 728, 732
BslI	CCNNNNNNNGG	6 cut(s)	235, 349, 390, 472, 771, 784
BsmAI	GTCTC	2 cut(s)	110, 714
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	5 cut(s)	662, 671, 722, 728, 732
BsnI	GGCC	5 cut(s)	118, 198, 365, 383, 408
Bsp1286I	GDGCHC	5 cut(s)	12, 101, 267, 608, 779
Bsp143I	GATC	6 cut(s)	69, 123, 171, 219, 316, 324
BspANI	GGCC	5 cut(s)	118, 198, 365, 383, 408
BspFNI	CGCG	3 cut(s)	77, 567, 610
BspLI	GGNNCC	6 cut(s)	31, 563, 587, 593, 614, 776
BspOI	GCTAGC	1 cut(s)	582
BspPI	GGATC	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	561
BsrFI	RCCGGY	3 cut(s)	93, 114, 433
BsrI	ACTGG	2 cut(s)	343, 466
BssAI	RCCGGY	3 cut(s)	93, 114, 433
BssECI	CCNNGG	7 cut(s)	178, 192, 193, 565, 608, 749, 780
BssMI	GATC	6 cut(s)	69, 123, 171, 219, 316, 324
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	6 cut(s)	194, 224, 362, 380, 751, 766
Bst4CI	ACNGT	2 cut(s)	503, 725
BstACI	GRCGYC	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	459
BstC8I	GCNNGC	4 cut(s)	79, 200, 580, 608
BstDSI	CCRYGG	3 cut(s)	565, 608, 780
BstFNI	CGCG	3 cut(s)	77, 567, 610
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	77, 162
BstKTI	GATC	6 cut(s)	72, 126, 174, 222, 319, 327
BstMAI	GTCTC	2 cut(s)	110, 714
BstMBI	GATC	6 cut(s)	69, 123, 171, 219, 316, 324
BstMCI	CGRYCG	3 cut(s)	94, 119, 409
BstMWI	GCNNNNNNNGC	7 cut(s)	87, 96, 371, 380, 492, 520, 810
BstNI	CCWGG	6 cut(s)	194, 224, 362, 380, 751, 766
BstNSI	RCATGY	1 cut(s)	154
BstUI	CGCG	3 cut(s)	77, 567, 610
BstV2I	GAAGAC	1 cut(s)	742
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BstZI	CGGCCG	2 cut(s)	116, 406
BsuRI	GGCC	5 cut(s)	118, 198, 365, 383, 408
BtgI	CCRYGG	3 cut(s)	565, 608, 780
BtrI	CACGTC	1 cut(s)	517
BtsI	GCAGTG	2 cut(s)	795, 836
BtsIMutI	CAGTG	3 cut(s)	730, 795, 836
Cac8I	GCNNGC	4 cut(s)	79, 200, 580, 608
CfoI	GCGC	2 cut(s)	77, 162
Cfr10I	RCCGGY	3 cut(s)	93, 114, 433
Cfr13I	GGNCC	4 cut(s)	40, 196, 226, 358
Cfr42I	CCGCGG	2 cut(s)	568, 611
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	154, 562
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	3 cut(s)	151, 169, 322
CviQI	GTAC	2 cut(s)	154, 562
DpnI	GATC	6 cut(s)	71, 125, 173, 221, 318, 326
DpnII	GATC	6 cut(s)	69, 123, 171, 219, 316, 324
DrdI	GACNNNNNNGTC	1 cut(s)	744
DseDI	GACNNNNNNGTC	1 cut(s)	744
EaeI	YGGCCR	2 cut(s)	116, 406
EagI	CGGCCG	2 cut(s)	116, 406
EciI	GGCGGA	2 cut(s)	20, 769
Ecl136II	GAGCTC	1 cut(s)	265
EclXI	CGGCCG	2 cut(s)	116, 406
Eco147I	AGGCCT	1 cut(s)	383
Eco24I	GRGCYC	3 cut(s)	267, 608, 779
Eco47I	GGWCC	3 cut(s)	40, 226, 358
Eco52I	CGGCCG	2 cut(s)	116, 406
Eco53kI	GAGCTC	1 cut(s)	265
Eco72I	CACGTG	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	6 cut(s)	192, 222, 360, 378, 749, 764
EcoT38I	GRGCYC	3 cut(s)	267, 608, 779
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	3 cut(s)	154, 172, 325
FaqI	GGGAC	5 cut(s)	662, 671, 722, 728, 732
FatI	CATG	3 cut(s)	150, 168, 321
FauI	CCCGC	3 cut(s)	221, 560, 615
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	2 cut(s)	186, 336
Fnu4HI	GCNGC	6 cut(s)	366, 369, 372, 409, 496, 786
FriOI	GRGCYC	3 cut(s)	267, 608, 779
Fsp4HI	GCNGC	6 cut(s)	366, 369, 372, 409, 496, 786
FspBI	CTAG	2 cut(s)	579, 819
GlaI	GCGC	2 cut(s)	76, 161
GluI	GCNGC	6 cut(s)	366, 369, 372, 409, 496, 786
GsuI	CTGGAG	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	5 cut(s)	118, 198, 365, 383, 408
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	2 cut(s)	77, 162
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	154, 172, 325
Hin6I	GCGC	2 cut(s)	75, 160
HinP1I	GCGC	2 cut(s)	75, 160
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	2 cut(s)	133, 835
HphI	GGTGA	3 cut(s)	58, 166, 448
Hpy166II	GTNNAC	3 cut(s)	49, 187, 337
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	2 cut(s)	67, 839
Hpy8I	GTNNAC	3 cut(s)	49, 187, 337
Hpy99I	CGWCG	2 cut(s)	124, 188
HpyAV	CCTTC	2 cut(s)	31, 791
HpyCH4III	ACNGT	2 cut(s)	503, 725
HpyCH4IV	ACGT	5 cut(s)	297, 333, 339, 458, 516
HpyCH4V	TGCA	3 cut(s)	388, 486, 514
HpyF10VI	GCNNNNNNNGC	7 cut(s)	87, 96, 371, 380, 492, 520, 810
HpySE526I	ACGT	5 cut(s)	297, 333, 339, 458, 516
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	154, 172, 325
HspAI	GCGC	2 cut(s)	75, 160
KpnI	GGTACC	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	171
KspI	CCGCGG	2 cut(s)	568, 611
Kzo9I	GATC	6 cut(s)	69, 123, 171, 219, 316, 324
MaeI	CTAG	2 cut(s)	579, 819
MaeII	ACGT	5 cut(s)	297, 333, 339, 458, 516
MaeIII	GTNAC	2 cut(s)	83, 436
MalI	GATC	6 cut(s)	71, 125, 173, 221, 318, 326
MboI	GATC	6 cut(s)	69, 123, 171, 219, 316, 324
MboII	GAAGA	3 cut(s)	247, 747, 818
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	5 cut(s)	12, 101, 267, 608, 779
MluCI	AATT	2 cut(s)	505, 536
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	567, 610
MvaI	CCWGG	6 cut(s)	194, 224, 362, 380, 751, 766
MvnI	CGCG	3 cut(s)	77, 567, 610
MwoI	GCNNNNNNNGC	7 cut(s)	87, 96, 371, 380, 492, 520, 810
NciI	CCSGG	4 cut(s)	44, 180, 449, 656
NdeII	GATC	6 cut(s)	69, 123, 171, 219, 316, 324
NheI	GCTAGC	1 cut(s)	578
NlaIII	CATG	3 cut(s)	154, 172, 325
NlaIV	GGNNCC	6 cut(s)	31, 563, 587, 593, 614, 776
NmeAIII	GCCGAG	1 cut(s)	839
NmuCI	GTSAC	2 cut(s)	83, 436
NspI	RCATGY	1 cut(s)	154
PasI	CCCWGGG	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	383
PciI	ACATGT	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 264
PfeI	GAWTC	1 cut(s)	835
PfoI	TCCNGGA	2 cut(s)	222, 447
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	6 cut(s)	367, 370, 373, 410, 497, 787
PleI	GAGTC	1 cut(s)	127
PmaCI	CACGTG	1 cut(s)	459
PmlI	CACGTG	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	459
PscI	ACATGT	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	6 cut(s)	192, 222, 360, 378, 749, 764
PspCI	CACGTG	1 cut(s)	459
PspGI	CCWGG	6 cut(s)	192, 222, 360, 378, 749, 764
PspN4I	GGNNCC	6 cut(s)	31, 563, 587, 593, 614, 776
PspPI	GGNCC	4 cut(s)	40, 196, 226, 358
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	2 cut(s)	155, 563
RsaNI	GTAC	2 cut(s)	154, 562
SacI	GAGCTC	1 cut(s)	267
SacII	CCGCGG	2 cut(s)	568, 611
SalI	GTCGAC	1 cut(s)	185
SatI	GCNGC	6 cut(s)	366, 369, 372, 409, 496, 786
Sau3AI	GATC	6 cut(s)	69, 123, 171, 219, 316, 324
Sau96I	GGNCC	4 cut(s)	40, 196, 226, 358
SchI	GAGTC	1 cut(s)	127
SduI	GDGCHC	5 cut(s)	12, 101, 267, 608, 779
Sfr303I	CCGCGG	2 cut(s)	568, 611
SgrAI	CRCCGGYG	1 cut(s)	433
SgrBI	CCGCGG	2 cut(s)	568, 611
SinI	GGWCC	3 cut(s)	40, 226, 358
Sse9I	AATT	2 cut(s)	505, 536
SseBI	AGGCCT	1 cut(s)	383
SspMI	CTAG	2 cut(s)	579, 819
SstI	GAGCTC	1 cut(s)	267
StuI	AGGCCT	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	503, 725
TaiI	ACGT	5 cut(s)	300, 336, 342, 461, 519
TaqI	TCGA	9 cut(s)	20, 186, 207, 234, 258, 267, 471, 490, 838
TasI	AATT	2 cut(s)	505, 536
TauI	GCSGC	6 cut(s)	368, 371, 374, 411, 498, 788
TfiI	GAWTC	1 cut(s)	835
TscAI	CASTG	3 cut(s)	730, 795, 836
TseFI	GTSAC	2 cut(s)	83, 436
Tsp45I	GTSAC	2 cut(s)	83, 436
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	3 cut(s)	730, 795, 836
VpaK11BI	GGWCC	3 cut(s)	40, 226, 358
XceI	RCATGY	1 cut(s)	154
XmiI	GTMKAC	2 cut(s)	186, 336
XspI	CTAG	2 cut(s)	579, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.