Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001144

Physical Location & Seq

Genomic Coordinates Forward (+)

72942634 .. 72943715

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG459100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCCATTGGGTGTGCTGCGAGTGAAAAAGGGATCATTACCATCTGAGAAGAATTCTGAATCTTGTGAAGTTGTACTGAACCTCTATCTCGTCGCCTCTCATCCGGCCCTCTGTCTCTGCATCAATTTTGGTTGCAATTTGCAGTTATTTCTCACCACAACCCATGGTCGTCATCCACCCGATCTAGAGCTACTATCTCCTCGTCGAGACGTATATATATGTATTCGAACTATGAGGAAGAAAGAGAAGCTTGTACCTTTTGGACGACTCGGTTCAAAACTGAATTGGATCAGTCCCAAAATCCAAAATCGAATTAGATCAGCCCCAAAATTCAAACATGTCCTCTCCTTCACCGACAAGGTCAAGGACTACGGTACCAGCCACAAGCTGCAAATTGGGATGCAAAACGCTACCGTCTTTCCAGACCCGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.3

Weight (kDa)

9.84

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11330 AT5G05850
fragaria_vesca	FvH4_2g00400 FvH4_5g35210 FvH4_5g35210 FvH4_5g35210
malus_domestica	MD05G1037800.v1.1 MD10G1041600.v1.1
prunus_persica	Prupe.8G003900_v2.0.a1
pyrus_communis	pycom05g02800 pycom10g02870
rosa_chinensis	RchiOBHm_Chr6g0249641 RchiOBHm_Chr7g0236341
rosa_laevigata	RLG00000001082 RLG00000015555 RLG00000018499 RLG00000018876 RLG00000019048
rosa_multiflora	Rmu_co8191622.1_g000001 Rmu_co8329307.1_g000001 Rmu_sc0000704.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019180 Rroxscaffold_3G00225210
rosa_rugosa	Rorug03G0338400 Rorug04G0195800 Rorug05G0494200 Rorug07G0296200 Rorug07G0296300 Rorug07G0296400 Rorug07G0296500 Rorug07G0296500 Rorug07G0296500 Rorug07G0296600 Rorug07G0296700 Rorug07G0296700
rosa_samantha	Rh1AG198700 Rh2AG167200 Rh2AG422000 Rh2BG174100 Rh2DG172600 Rh2DG587800 Rh3AG279400 Rh4AG190400 Rh5BG446700 Rh5DG459100 Rh6AG004200 Rh6AG382900 Rh6BG005900 Rh6CG003200 Rh6CG396200 Rh6DG003000 Rh7AG451000 Rh7BG422700 Rh7CG470600 Rh7DG440400
rosa_wichuraiana	Rw0G019890 Rw6G000460 Rw7G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	374
AccB1I	GGYRCC	1 cut(s)	374
AclWI	GGATC	2 cut(s)	40, 296
AcsI	RAATTY	2 cut(s)	52, 329
AfaI	GTAC	3 cut(s)	75, 255, 376
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	276, 334
AluBI	AGCT	3 cut(s)	190, 250, 388
AluI	AGCT	3 cut(s)	190, 250, 388
Alw26I	GTCTC	2 cut(s)	119, 201
AlwI	GGATC	2 cut(s)	40, 296
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	16, 388
ApoI	RAATTY	2 cut(s)	52, 329
Asp718I	GGTACC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	2 cut(s)	145, 343
AsuII	TTCGAA	1 cut(s)	226
BaeI	ACNNNNGTAYC	2 cut(s)	358, 391
BanI	GGYRCC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	3, 375
BccI	CCATC	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	119, 201
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	2 cut(s)	17, 389
BlsI	GCNGC	2 cut(s)	18, 390
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	376
BmsI	GCATC	2 cut(s)	129, 390
Bpu14I	TTCGAA	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	3 cut(s)	100, 172, 405
BseMII	CTCAG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	3, 375
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	279
BsmAI	GTCTC	2 cut(s)	119, 201
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	107
Bsp119I	TTCGAA	1 cut(s)	226
Bsp143I	GATC	5 cut(s)	32, 181, 288, 317, 429
Bsp19I	CCATGG	1 cut(s)	163
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	376
BspPI	GGATC	2 cut(s)	40, 296
BspT104I	TTCGAA	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	5 cut(s)	32, 181, 288, 317, 429
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	374, 415
BstBI	TTCGAA	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	3 cut(s)	100, 172, 405
BstKTI	GATC	5 cut(s)	35, 184, 291, 320, 432
BstMAI	GTCTC	2 cut(s)	119, 201
BstMBI	GATC	5 cut(s)	32, 181, 288, 317, 429
BstNSI	RCATGY	1 cut(s)	341
BstV1I	GCAGC	2 cut(s)	3, 375
BsuRI	GGCC	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	100, 172, 405
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	3 cut(s)	74, 254, 375
CviAII	CATG	2 cut(s)	164, 338
CviJI	RGCY	6 cut(s)	107, 190, 250, 323, 381, 388
CviKI_1	RGCY	6 cut(s)	107, 190, 250, 323, 381, 388
CviQI	GTAC	3 cut(s)	74, 254, 375
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	5 cut(s)	34, 183, 290, 319, 431
DpnII	GATC	5 cut(s)	32, 181, 288, 317, 429
Eco130I	CCWWGG	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	2 cut(s)	167, 341
FaiI	YATR	7 cut(s)	165, 214, 216, 218, 220, 233, 339
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	2 cut(s)	163, 337
Fnu4HI	GCNGC	2 cut(s)	17, 389
FokI	GGATG	3 cut(s)	87, 159, 412
Fsp4HI	GCNGC	2 cut(s)	17, 389
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	2 cut(s)	17, 389
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	2 cut(s)	167, 341
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	59, 267
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	2 cut(s)	145, 343
Hpy188I	TCNGA	2 cut(s)	46, 58
Hpy188III	TCNNGA	3 cut(s)	185, 206, 422
Hpy99I	CGWCG	2 cut(s)	95, 207
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	374, 415
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	5 cut(s)	120, 135, 142, 391, 403
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	167, 341
KpnI	GGTACC	1 cut(s)	378
Kzo9I	GATC	5 cut(s)	32, 181, 288, 317, 429
LpnPI	CCDG	2 cut(s)	117, 391
Lsp1109I	GCAGC	2 cut(s)	3, 375
LweI	GCATC	2 cut(s)	129, 390
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	210
MalI	GATC	5 cut(s)	34, 183, 290, 319, 431
MboI	GATC	5 cut(s)	32, 181, 288, 317, 429
MboII	GAAGA	2 cut(s)	61, 250
MluCI	AATT	7 cut(s)	52, 124, 136, 283, 312, 329, 393
MlyI	GAGTC	1 cut(s)	261
MnlI	CCTC	6 cut(s)	92, 106, 119, 210, 228, 353
MspI	CCGG	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	163
NdeII	GATC	5 cut(s)	32, 181, 288, 317, 429
NlaIII	CATG	2 cut(s)	167, 341
NlaIV	GGNNCC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	341
NspV	TTCGAA	1 cut(s)	226
PciI	ACATGT	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	59
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	18, 390
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PscI	ACATGT	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	3 cut(s)	75, 255, 376
RsaNI	GTAC	3 cut(s)	74, 254, 375
SatI	GCNGC	2 cut(s)	17, 389
Sau3AI	GATC	5 cut(s)	32, 181, 288, 317, 429
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	261
SetI	ASST	7 cut(s)	84, 192, 213, 252, 259, 363, 390
SfaNI	GCATC	2 cut(s)	129, 390
SfuI	TTCGAA	1 cut(s)	226
Sse9I	AATT	7 cut(s)	52, 124, 136, 283, 312, 329, 393
SspMI	CTAG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	374, 415
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	3 cut(s)	205, 226, 310
TasI	AATT	7 cut(s)	52, 124, 136, 283, 312, 329, 393
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	59
TseI	GCWGC	2 cut(s)	16, 388
Tth111I	GACNNNGTC	1 cut(s)	359
XapI	RAATTY	2 cut(s)	52, 329
XbaI	TCTAGA	1 cut(s)	184
XceI	RCATGY	1 cut(s)	341
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.