Rh6BG005900

Plant intracellular ras-group-related LRR protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
936191 .. 937000
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG005900.1

Sequence Viewer

Length: 810 bp
ATGGATCCGAACCCGTCCAACTTCCCCATCCTCTCCTACGTCATGGACCGCCTTTCCACCGTAGGATCCAAGTCCCCCGTCGACGACATCTCCGACCTCGAGTCCATTCAAATCGACGATGGCCAGCCCCAGTTGATCAAACCCCACCCACCATCCTCATCCTCTGGCCTCCTTCACCAGATGCCCCACCTCTCCGACCCCAAAGTCATCGCCGCCATGACCCGCGCCGTCTCCGACGTCGCCCAGACCCGCTCCGTCCTCCACGCCCTCGGCGACCGTCCCGACCACGAGGCCGTCGACGCCGCCAAGGCCAAGCTCGCCCACATCGAGTCCGCTCTCTCCAAGAAGCTCGAGGACCTCGTCCTCTCCCCCCGCCCCTCCGACGTCGACCGCTTCCAGTGGCGGGCCCACCTCGCCGAGCGCGAGCAGGAGTGCCGCGACGCCGCCGAGAAGGAGAAGCGCGACTGCAAGGCCATTCTCCAGCTCGACGAGCTCCACGCCTCCTACGGGAAGCTTCTCAAGGACGCCGAGGACAGGCTCACCAAGATTTATCGCTCCGCCGAGGACGGAATCGTCGAGGAGCCGCCGCCGGTCACCGACCAAGTCCACGAGGAGGTCGTCGGCATTCTGCAGCAGGCTTCCGGGACTGCGCTCGACCGGATCAACCTCTCCGGCCGCCGCCTCCGGTGCTTGCCGGAGGCATTTGGCAGGATCACCGGATTGCTACACCTTGATGTTTCCAACAATGAGCTCCAGGTTTGCTTCCGTTTTTCTTTCTTTTCTTGCAAAGAAATAGAAATTGTTACTTAG

Protein Analysis

269

Amino Acids

29.9

Weight (kDa)

5.3

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 203, 572
AatII GACGTC 2 cut(s) 240, 387
AccBSI CCGCTC 2 cut(s) 252, 335
AccI GTMKAC 3 cut(s) 81, 297, 387
AccII CGCG 4 cut(s) 225, 423, 438, 462
AclWI GGATC 5 cut(s) 12, 60, 73, 668, 719
AcoI YGGCCR 2 cut(s) 121, 673
AcyI GRCGYC 5 cut(s) 237, 300, 384, 441, 525
AfiI CCNNNNNNNGG 4 cut(s) 403, 507, 534, 613
AgsI TTSAA 1 cut(s) 110
AhdI GACNNNNNGTC 1 cut(s) 100
AjnI CCWGG 1 cut(s) 753
AluBI AGCT 6 cut(s) 316, 349, 484, 493, 514, 751
AluI AGCT 6 cut(s) 316, 349, 484, 493, 514, 751
Alw21I GWGCWC 2 cut(s) 495, 753
Alw26I GTCTC 1 cut(s) 235
AlwI GGATC 5 cut(s) 12, 60, 73, 668, 719
Ama87I CYCGRG 2 cut(s) 98, 350
AoxI GGCC 7 cut(s) 121, 166, 291, 309, 405, 471, 673
ApaI GGGCCC 1 cut(s) 409
ApeKI GCWGC 1 cut(s) 631
AspLEI GCGC 4 cut(s) 227, 423, 462, 652
AspS9I GGNCC 4 cut(s) 46, 355, 405, 406
AsuC2I CCSGG 1 cut(s) 643
AsuHPI GGTGA 4 cut(s) 167, 532, 586, 706
AvaI CYCGRG 2 cut(s) 98, 350
AvaII GGWCC 2 cut(s) 46, 355
BaeGI GKGCMC 1 cut(s) 409
BalI TGGCCA 1 cut(s) 123
BamHI GGATCC 2 cut(s) 4, 65
BanII GRGCYC 3 cut(s) 409, 495, 753
BauI CACGAG 2 cut(s) 287, 608
Bbv12I GWGCWC 2 cut(s) 495, 753
BbvI GCAGC 1 cut(s) 643
BccI CCATC 3 cut(s) 35, 113, 160
BceAI ACGGC 2 cut(s) 212, 278
BciT130I CCWGG 1 cut(s) 755
BclI TGATCA 1 cut(s) 135
BcnI CCSGG 1 cut(s) 643
BcoDI GTCTC 1 cut(s) 235
BfmI CTRYAG 1 cut(s) 629
BglI GCCNNNNNGGC 1 cut(s) 308
BisI GCNGC 9 cut(s) 213, 303, 436, 444, 584, 587, 632, 676, 679
BlsI GCNGC 9 cut(s) 214, 304, 437, 445, 585, 588, 633, 677, 680
Bme1390I CCNGG 2 cut(s) 643, 755
Bme18I GGWCC 2 cut(s) 46, 355
BmeRI GACNNNNNGTC 1 cut(s) 100
BmeT110I CYCGRG 2 cut(s) 98, 350
BmgT120I GGNCC 4 cut(s) 46, 355, 405, 406
BmiI GGNNCC 4 cut(s) 6, 67, 407, 582
BmrFI CCNGG 2 cut(s) 643, 755
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 171
BmuI ACTGGG 1 cut(s) 124
BpmI CTGGAG 2 cut(s) 464, 737
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 643
BsaHI GRCGYC 5 cut(s) 237, 300, 384, 441, 525
BsaJI CCNNGG 4 cut(s) 268, 306, 528, 561
BsaWI WCCGGW 3 cut(s) 657, 684, 716
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 4 cut(s) 403, 507, 534, 613
Bse118I RCCGGY 1 cut(s) 589
Bse1I ACTGG 2 cut(s) 130, 397
BseBI CCWGG 1 cut(s) 755
BseDI CCNNGG 4 cut(s) 268, 306, 528, 561
BseGI GGATG 3 cut(s) 27, 152, 158
BseLI CCNNNNNNNGG 4 cut(s) 403, 507, 534, 613
BseNI ACTGG 2 cut(s) 130, 397
BseRI GAGGAG 2 cut(s) 593, 626
BseSI GKGCMC 1 cut(s) 409
BseX3I CGGCCG 1 cut(s) 673
BseXI GCAGC 1 cut(s) 643
Bsh1236I CGCG 4 cut(s) 225, 423, 438, 462
Bsh1285I CGRYCG 4 cut(s) 277, 391, 658, 676
BshFI GGCC 7 cut(s) 123, 168, 293, 311, 407, 473, 675
BsiEI CGRYCG 4 cut(s) 277, 391, 658, 676
BsiHKAI GWGCWC 2 cut(s) 495, 753
BsiHKCI CYCGRG 2 cut(s) 98, 350
BsiSI CCGG 7 cut(s) 590, 642, 658, 672, 685, 695, 717
BslFI GGGAC 3 cut(s) 58, 264, 658
BslI CCNNNNNNNGG 4 cut(s) 403, 507, 534, 613
BsmAI GTCTC 1 cut(s) 235
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 3 cut(s) 58, 264, 658
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 7 cut(s) 123, 168, 293, 311, 407, 473, 675
BsoBI CYCGRG 2 cut(s) 98, 350
Bsp120I GGGCCC 1 cut(s) 405
Bsp1286I GDGCHC 3 cut(s) 409, 495, 753
Bsp143I GATC 5 cut(s) 4, 65, 135, 660, 711
BspANI GGCC 7 cut(s) 123, 168, 293, 311, 407, 473, 675
BspFNI CGCG 4 cut(s) 225, 423, 438, 462
BspLI GGNNCC 4 cut(s) 6, 67, 407, 582
BspMAI CTGCAG 1 cut(s) 633
BspPI GGATC 5 cut(s) 12, 60, 73, 668, 719
BsrBI CCGCTC 2 cut(s) 252, 335
BsrFI RCCGGY 1 cut(s) 589
BsrI ACTGG 2 cut(s) 130, 397
BssAI RCCGGY 1 cut(s) 589
BssECI CCNNGG 4 cut(s) 268, 306, 528, 561
BssMI GATC 5 cut(s) 4, 65, 135, 660, 711
BssNI GRCGYC 5 cut(s) 237, 300, 384, 441, 525
BssSI CACGAG 2 cut(s) 287, 608
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 2 cut(s) 287, 608
Bst2UI CCWGG 1 cut(s) 755
Bst4CI ACNGT 2 cut(s) 61, 278
BstACI GRCGYC 5 cut(s) 237, 300, 384, 441, 525
BstC8I GCNNGC 6 cut(s) 125, 318, 405, 425, 636, 692
BstDEI CTNAG 1 cut(s) 807
BstEII GGTNACC 1 cut(s) 592
BstF5I GGATG 3 cut(s) 27, 152, 158
BstFNI CGCG 4 cut(s) 225, 423, 438, 462
BstHHI GCGC 4 cut(s) 227, 423, 462, 652
BstKTI GATC 5 cut(s) 7, 68, 138, 663, 714
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 5 cut(s) 4, 65, 135, 660, 711
BstMCI CGRYCG 4 cut(s) 277, 391, 658, 676
BstMWI GCNNNNNNNGC 6 cut(s) 299, 308, 317, 413, 490, 687
BstNI CCWGG 1 cut(s) 755
BstPI GGTNACC 1 cut(s) 592
BstSCI CCNGG 2 cut(s) 641, 753
BstSFI CTRYAG 1 cut(s) 629
BstSLI GKGCMC 1 cut(s) 409
BstUI CGCG 4 cut(s) 225, 423, 438, 462
BstV1I GCAGC 1 cut(s) 643
BstX2I RGATCY 2 cut(s) 4, 65
BstYI RGATCY 2 cut(s) 4, 65
BstZI CGGCCG 1 cut(s) 673
BsuRI GGCC 7 cut(s) 123, 168, 293, 311, 407, 473, 675
BtgZI GCGATG 1 cut(s) 193
BtsCI GGATG 3 cut(s) 27, 152, 158
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 6 cut(s) 125, 318, 405, 425, 636, 692
CfoI GCGC 4 cut(s) 227, 423, 462, 652
Cfr10I RCCGGY 1 cut(s) 589
Cfr13I GGNCC 4 cut(s) 46, 355, 405, 406
CseI GACGC 3 cut(s) 308, 449, 533
CviAII CATG 2 cut(s) 43, 217
DdeI CTNAG 1 cut(s) 807
DpnI GATC 5 cut(s) 6, 67, 137, 662, 713
DpnII GATC 5 cut(s) 4, 65, 135, 660, 711
DrdI GACNNNNNNGTC 2 cut(s) 203, 572
DriI GACNNNNNGTC 1 cut(s) 100
DseDI GACNNNNNNGTC 2 cut(s) 203, 572
EaeI YGGCCR 2 cut(s) 121, 673
EagI CGGCCG 1 cut(s) 673
Eam1105I GACNNNNNGTC 1 cut(s) 100
EciI GGCGGA 1 cut(s) 547
Ecl136II GAGCTC 2 cut(s) 493, 751
EclXI CGGCCG 1 cut(s) 673
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 3 cut(s) 409, 495, 753
Eco47I GGWCC 2 cut(s) 46, 355
Eco52I CGGCCG 1 cut(s) 673
Eco53kI GAGCTC 2 cut(s) 493, 751
Eco88I CYCGRG 2 cut(s) 98, 350
Eco91I GGTNACC 1 cut(s) 592
EcoICRI GAGCTC 2 cut(s) 493, 751
EcoO109I RGGNCCY 1 cut(s) 355
EcoO65I GGTNACC 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 753
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 3 cut(s) 409, 495, 753
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 2 cut(s) 46, 220
FaiI YATR 2 cut(s) 44, 218
FaqI GGGAC 3 cut(s) 58, 264, 658
FatI CATG 2 cut(s) 42, 216
FauI CCCGC 4 cut(s) 230, 257, 380, 396
FbaI TGATCA 1 cut(s) 135
FblI GTMKAC 3 cut(s) 81, 297, 387
Fnu4HI GCNGC 9 cut(s) 213, 303, 436, 444, 584, 587, 632, 676, 679
FokI GGATG 3 cut(s) 14, 139, 145
FriOI GRGCYC 3 cut(s) 409, 495, 753
Fsp4HI GCNGC 9 cut(s) 213, 303, 436, 444, 584, 587, 632, 676, 679
GlaI GCGC 4 cut(s) 226, 422, 461, 651
GluI GCNGC 9 cut(s) 213, 303, 436, 444, 584, 587, 632, 676, 679
GsuI CTGGAG 2 cut(s) 464, 737
HaeIII GGCC 7 cut(s) 123, 168, 293, 311, 407, 473, 675
HapII CCGG 7 cut(s) 590, 642, 658, 672, 685, 695, 717
HgaI GACGC 3 cut(s) 308, 449, 533
HhaI GCGC 4 cut(s) 227, 423, 462, 652
Hin1I GRCGYC 5 cut(s) 237, 300, 384, 441, 525
Hin1II CATG 2 cut(s) 46, 220
Hin6I GCGC 4 cut(s) 225, 421, 460, 650
HinP1I GCGC 4 cut(s) 225, 421, 460, 650
HincII GTYRAC 3 cut(s) 82, 298, 388
HindII GTYRAC 3 cut(s) 82, 298, 388
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 3 cut(s) 101, 329, 570
HpaII CCGG 7 cut(s) 590, 642, 658, 672, 685, 695, 717
HphI GGTGA 4 cut(s) 167, 532, 586, 706
Hpy166II GTNNAC 4 cut(s) 82, 298, 388, 607
Hpy188I TCNGA 5 cut(s) 9, 94, 196, 235, 382
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 4 cut(s) 82, 298, 388, 607
HpyAV CCTTC 2 cut(s) 182, 445
HpyCH4III ACNGT 2 cut(s) 61, 278
HpyCH4IV ACGT 3 cut(s) 39, 237, 384
HpyCH4V TGCA 3 cut(s) 468, 631, 786
HpyF10VI GCNNNNNNNGC 6 cut(s) 299, 308, 317, 413, 490, 687
HpyF3I CTNAG 1 cut(s) 807
HpySE526I ACGT 3 cut(s) 39, 237, 384
Hsp92I GRCGYC 5 cut(s) 237, 300, 384, 441, 525
Hsp92II CATG 2 cut(s) 46, 220
HspAI GCGC 4 cut(s) 225, 421, 460, 650
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 5 cut(s) 4, 65, 135, 660, 711
LmnI GCTCC 5 cut(s) 257, 498, 560, 580, 756
Lsp1109I GCAGC 1 cut(s) 643
LweI GCATC 1 cut(s) 171
MaeII ACGT 3 cut(s) 39, 237, 384
MaeIII GTNAC 2 cut(s) 592, 802
MalI GATC 5 cut(s) 6, 67, 137, 662, 713
MbiI CCGCTC 2 cut(s) 252, 335
MboI GATC 5 cut(s) 4, 65, 135, 660, 711
MflI RGATCY 2 cut(s) 4, 65
MhlI GDGCHC 3 cut(s) 409, 495, 753
MlsI TGGCCA 1 cut(s) 123
MluCI AATT 1 cut(s) 798
MluNI TGGCCA 1 cut(s) 123
MlyI GAGTC 2 cut(s) 110, 338
MmeI TCCRAC 6 cut(s) 42, 117, 219, 258, 405, 765
Mox20I TGGCCA 1 cut(s) 123
MscI TGGCCA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 732
Msp20I TGGCCA 1 cut(s) 123
MspI CCGG 7 cut(s) 590, 642, 658, 672, 685, 695, 717
MspR9I CCNGG 2 cut(s) 643, 755
Mva1269I GAATGC 1 cut(s) 624
MvaI CCWGG 1 cut(s) 755
MvnI CGCG 4 cut(s) 225, 423, 438, 462
MwoI GCNNNNNNNGC 6 cut(s) 299, 308, 317, 413, 490, 687
NciI CCSGG 1 cut(s) 643
NdeII GATC 5 cut(s) 4, 65, 135, 660, 711
NlaIII CATG 2 cut(s) 46, 220
NlaIV GGNNCC 4 cut(s) 6, 67, 407, 582
NmeAIII GCCGAG 5 cut(s) 249, 442, 472, 553, 586
NmuCI GTSAC 1 cut(s) 592
PaeR7I CTCGAG 2 cut(s) 98, 350
PcsI WCGNNNNNNNCGW 8 cut(s) 90, 270, 294, 324, 357, 420, 573, 615
PctI GAATGC 1 cut(s) 624
PfeI GAWTC 1 cut(s) 570
PflFI GACNNNGTC 2 cut(s) 359, 602
PfoI TCCNGGA 1 cut(s) 641
PkrI GCNGC 9 cut(s) 214, 304, 437, 445, 585, 588, 633, 677, 680
PleI GAGTC 2 cut(s) 109, 337
PpsI GAGTC 2 cut(s) 109, 337
PpuMI RGGWCCY 1 cut(s) 355
Psp124BI GAGCTC 2 cut(s) 495, 753
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 753
PspEI GGTNACC 1 cut(s) 592
PspGI CCWGG 1 cut(s) 753
PspN4I GGNNCC 4 cut(s) 6, 67, 407, 582
PspOMI GGGCCC 1 cut(s) 405
PspPI GGNCC 4 cut(s) 46, 355, 405, 406
PspPPI RGGWCCY 1 cut(s) 355
PspXI VCTCGAGB 2 cut(s) 98, 350
PstI CTGCAG 1 cut(s) 633
PsuI RGATCY 2 cut(s) 4, 65
PsyI GACNNNGTC 2 cut(s) 359, 602
RseI CAYNNNNRTG 1 cut(s) 732
SacI GAGCTC 2 cut(s) 495, 753
SalI GTCGAC 3 cut(s) 80, 296, 386
SatI GCNGC 9 cut(s) 213, 303, 436, 444, 584, 587, 632, 676, 679
Sau3AI GATC 5 cut(s) 4, 65, 135, 660, 711
Sau96I GGNCC 4 cut(s) 46, 355, 405, 406
SchI GAGTC 2 cut(s) 110, 338
ScrFI CCNGG 2 cut(s) 643, 755
SduI GDGCHC 3 cut(s) 409, 495, 753
SfaNI GCATC 1 cut(s) 171
SfcI CTRYAG 1 cut(s) 629
Sfr274I CTCGAG 2 cut(s) 98, 350
SgrDI CGTCGACG 2 cut(s) 80, 296
SinI GGWCC 2 cut(s) 46, 355
SlaI CTCGAG 2 cut(s) 98, 350
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 3 cut(s) 98, 350, 518
SmoI CTYRAG 3 cut(s) 98, 350, 518
Sse9I AATT 1 cut(s) 798
SstI GAGCTC 2 cut(s) 495, 753
StyD4I CCNGG 2 cut(s) 641, 753
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 61, 278
TaiI ACGT 3 cut(s) 42, 240, 387
TasI AATT 1 cut(s) 798
TauI GCSGC 8 cut(s) 215, 305, 438, 446, 586, 589, 678, 681
TfiI GAWTC 1 cut(s) 570
TscAI CASTG 1 cut(s) 404
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 1 cut(s) 631
Tsp45I GTSAC 1 cut(s) 592
TspGWI ACGGA 3 cut(s) 244, 582, 755
TspRI CASTG 1 cut(s) 404
Tth111I GACNNNGTC 2 cut(s) 359, 602
VpaK11BI GGWCC 2 cut(s) 46, 355
XhoI CTCGAG 2 cut(s) 98, 350
XmiI GTMKAC 3 cut(s) 81, 297, 387
ZraI GACGTC 2 cut(s) 238, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.