AT3G11800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003126
Physical Location & Seq
Forward (+)
3725989 .. 3727741
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11800.1

Sequence Viewer

Length: 741 bp
ATGGCTAGATTCTTTCTTCTCTGTTGCCTCTTCGCGGCGGTGCTGACGTCATCATTGACGGAGGCCGGCGACAATAATCAAGTCTACTCGCCTTGTTCAGATTCTACTGTTGCGATCGGCGATGGATTCACTTTCGGCATTGCCTTCGCTGCGAAAGATTCTTTCTTCAGTACAAATCGATCCAAATCCGTTCAGTACTCTCCCTGCGATCATCGCCATCTCTCGCTCAACGGAAACTCTGAGGTCGCCGTGTTCAGACCTAAAGTCGATGAGATCACACTCCTTACCATCAATACCTCTAGTTCCTCCAGTTTCCGCCCGGATGCTTCCAAGGGATATATGGTAGCATTCGCTGGTGCAAAATACGCTGCAAGATCACTCCCAATTATGGTTGCAGACAGCAATCACATCGTGACAAGCTTCACCCTTGTTCTTGAGTTCCAGAAAGGAAGGCTTGAGAACATGTTCTGGAAGAAAGACGGATGCTCGAAGTGTTCTGGAGATTCGAAATTCGTGTGCCTCAACAAAGAAGAATGTGCGATCAAGCCGCAAAACTGCAAGAACCAAGGAGGACAAGTAGATTGTAGCTTGGGGATCCAATTGGCGTTTTCGGGCACGGATAAGCACTACACCGCGTTGAATTCGTGGTATGAGGTTGCAAATCTGAAGCAGTACTCGCTCTATGGCCTCTACTCCAATCTAAAGGACTCACTAACCAACCCATTCAAGAACATCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

27.04

Weight (kDa)

8.28

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 84
AccII CGCG 2 cut(s) 35, 635
AciI CCGC 5 cut(s) 35, 38, 316, 548, 633
AclWI GGATC 3 cut(s) 174, 589, 602
AcsI RAATTY 2 cut(s) 509, 640
AcuI CTGAAG 2 cut(s) 151, 686
AcyI GRCGYC 1 cut(s) 47
AdeI CACNNNGTG 1 cut(s) 412
AfaI GTAC 3 cut(s) 172, 197, 674
AfiI CCNNNNNNNGG 2 cut(s) 34, 388
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 2 cut(s) 640, 727
AhdI GACNNNNNGTC 1 cut(s) 263
AluBI AGCT 2 cut(s) 420, 588
AluI AGCT 2 cut(s) 420, 588
AlwI GGATC 3 cut(s) 174, 589, 602
AoxI GGCC 2 cut(s) 63, 685
ApeKI GCWGC 2 cut(s) 149, 368
ApoI RAATTY 2 cut(s) 509, 640
Asp700I GAANNNNTTC 2 cut(s) 464, 734
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 415
AsuII TTCGAA 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 617
BamHI GGATCC 1 cut(s) 594
BbvI GCAGC 2 cut(s) 136, 355
BccI CCATC 3 cut(s) 116, 225, 296
BceAI ACGGC 1 cut(s) 233
BcgI CGANNNNNNTGC 4 cut(s) 127, 161, 391, 425
BcnI CCSGG 1 cut(s) 320
BfaI CTAG 2 cut(s) 6, 300
BisI GCNGC 4 cut(s) 36, 150, 369, 548
BlsI GCNGC 4 cut(s) 37, 151, 370, 549
BmcAI AGTACT 2 cut(s) 197, 674
Bme1390I CCNGG 1 cut(s) 320
BmeRI GACNNNNNGTC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 596
BmrFI CCNGG 1 cut(s) 320
BmsI GCATC 2 cut(s) 313, 473
BpmI CTGGAG 2 cut(s) 292, 519
Bpu14I TTCGAA 1 cut(s) 506
BpuEI CTTGAG 2 cut(s) 455, 476
BpuMI CCSGG 1 cut(s) 320
Bsa29I ATCGAT 1 cut(s) 178
BsaBI GATNNNNATC 1 cut(s) 184
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 330, 565
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 388
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 184
BseCI ATCGAT 1 cut(s) 178
BseDI CCNNGG 2 cut(s) 330, 565
BseGI GGATG 2 cut(s) 328, 488
BseJI GATNNNNATC 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 34, 388
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 309
BseSI GKGCMC 1 cut(s) 617
BseXI GCAGC 2 cut(s) 136, 355
Bsh1236I CGCG 2 cut(s) 35, 635
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 2 cut(s) 65, 687
BshVI ATCGAT 1 cut(s) 178
BsiEI CGRYCG 1 cut(s) 117
BsiSI CCGG 2 cut(s) 66, 320
BslI CCNNNNNNNGG 2 cut(s) 34, 388
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 2 cut(s) 65, 687
Bsp119I TTCGAA 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 617
Bsp143I GATC 7 cut(s) 114, 179, 208, 273, 374, 540, 594
BspACI CCGC 5 cut(s) 35, 38, 316, 548, 633
BspANI GGCC 2 cut(s) 65, 687
BspCNI CTCAG 1 cut(s) 232
BspDI ATCGAT 1 cut(s) 178
BspFNI CGCG 2 cut(s) 35, 635
BspLI GGNNCC 1 cut(s) 596
BspPI GGATC 3 cut(s) 174, 589, 602
BspT104I TTCGAA 1 cut(s) 506
BsrDI GCAATG 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 309
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 330, 565
BssMI GATC 7 cut(s) 114, 179, 208, 273, 374, 540, 594
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 2 cut(s) 330, 565
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 328, 488
BstFNI CGCG 2 cut(s) 35, 635
BstKTI GATC 7 cut(s) 117, 182, 211, 276, 377, 543, 597
BstMBI GATC 7 cut(s) 114, 179, 208, 273, 374, 540, 594
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 4 cut(s) 149, 213, 365, 676
BstNSI RCATGY 1 cut(s) 466
BstSCI CCNGG 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 617
BstUI CGCG 2 cut(s) 35, 635
BstV1I GCAGC 2 cut(s) 136, 355
BstX2I RGATCY 1 cut(s) 594
BstYI RGATCY 1 cut(s) 594
Bsu15I ATCGAT 1 cut(s) 178
BsuRI GGCC 2 cut(s) 65, 687
BsuTUI ATCGAT 1 cut(s) 178
BtgZI GCGATG 2 cut(s) 135, 197
BtsCI GGATG 2 cut(s) 328, 488
Cac8I GCNNGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 65
ClaI ATCGAT 1 cut(s) 178
Csp6I GTAC 3 cut(s) 171, 196, 673
CviAII CATG 1 cut(s) 463
CviJI RGCY 7 cut(s) 5, 65, 420, 454, 547, 588, 687
CviKI_1 RGCY 7 cut(s) 5, 65, 420, 454, 547, 588, 687
CviQI GTAC 3 cut(s) 171, 196, 673
DdeI CTNAG 1 cut(s) 240
DpnI GATC 7 cut(s) 116, 181, 210, 275, 376, 542, 596
DpnII GATC 7 cut(s) 114, 179, 208, 273, 374, 540, 594
DraIII CACNNNGTG 1 cut(s) 412
DriI GACNNNNNGTC 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 35
Eam1105I GACNNNNNGTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 35
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 330, 565
Eco57I CTGAAG 2 cut(s) 151, 686
EcoRI GAATTC 1 cut(s) 640
EcoT14I CCWWGG 2 cut(s) 330, 565
ErhI CCWWGG 2 cut(s) 330, 565
FaeI CATG 1 cut(s) 466
FaiI YATR 6 cut(s) 339, 341, 389, 464, 651, 684
FalI AAGNNNNNCTT 3 cut(s) 438, 470, 719
FatI CATG 1 cut(s) 462
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 4 cut(s) 36, 150, 369, 548
FokI GGATG 2 cut(s) 335, 495
Fsp4HI GCNGC 4 cut(s) 36, 150, 369, 548
FspBI CTAG 2 cut(s) 6, 300
GluI GCNGC 4 cut(s) 36, 150, 369, 548
GsuI CTGGAG 2 cut(s) 292, 519
HaeIII GGCC 2 cut(s) 65, 687
HapII CCGG 2 cut(s) 66, 320
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 466
HindIII AAGCTT 1 cut(s) 418
HinfI GANTC 6 cut(s) 9, 101, 126, 158, 503, 707
HpaII CCGG 2 cut(s) 66, 320
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 5 cut(s) 100, 241, 257, 666, 740
Hpy188III TCNNGA 6 cut(s) 412, 434, 442, 469, 498, 727
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 154, 444
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 5 cut(s) 359, 371, 395, 558, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 213, 365, 676
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 466
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 7 cut(s) 114, 179, 208, 273, 374, 540, 594
LpnPI CCDG 8 cut(s) 79, 217, 322, 333, 339, 454, 455, 483
Lsp1109I GCAGC 2 cut(s) 136, 355
LweI GCATC 2 cut(s) 313, 473
MaeI CTAG 2 cut(s) 6, 300
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 412
MalI GATC 7 cut(s) 116, 181, 210, 275, 376, 542, 596
MboI GATC 7 cut(s) 114, 179, 208, 273, 374, 540, 594
MboII GAAGA 6 cut(s) 8, 22, 157, 484, 542, 727
MfeI CAATTG 1 cut(s) 599
MflI RGATCY 1 cut(s) 594
MhlI GDGCHC 1 cut(s) 617
MluCI AATT 4 cut(s) 384, 509, 599, 640
MlyI GAGTC 1 cut(s) 701
MnlI CCTC 9 cut(s) 38, 55, 235, 307, 316, 530, 563, 646, 698
MroNI GCCGGC 1 cut(s) 65
MroXI GAANNNNTTC 2 cut(s) 464, 734
MspI CCGG 2 cut(s) 66, 320
MspR9I CCNGG 1 cut(s) 320
MunI CAATTG 1 cut(s) 599
Mva1269I GAATGC 1 cut(s) 347
MvnI CGCG 2 cut(s) 35, 635
MwoI GCNNNNNNNGC 4 cut(s) 149, 213, 365, 676
NaeI GCCGGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 320
NdeII GATC 7 cut(s) 114, 179, 208, 273, 374, 540, 594
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 1 cut(s) 466
NlaIV GGNNCC 1 cut(s) 596
NmuCI GTSAC 1 cut(s) 412
NspI RCATGY 1 cut(s) 466
NspV TTCGAA 1 cut(s) 506
PciI ACATGT 1 cut(s) 462
PctI GAATGC 1 cut(s) 347
PdiI GCCGGC 1 cut(s) 67
PdmI GAANNNNTTC 2 cut(s) 464, 734
PfeI GAWTC 5 cut(s) 9, 101, 126, 158, 503
PkrI GCNGC 4 cut(s) 37, 151, 370, 549
Ple19I CGATCG 1 cut(s) 117
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
PscI ACATGT 1 cut(s) 462
PspN4I GGNNCC 1 cut(s) 596
PsuI RGATCY 1 cut(s) 594
PvuI CGATCG 1 cut(s) 117
RsaI GTAC 3 cut(s) 172, 197, 674
RsaNI GTAC 3 cut(s) 171, 196, 673
SatI GCNGC 4 cut(s) 36, 150, 369, 548
Sau3AI GATC 7 cut(s) 114, 179, 208, 273, 374, 540, 594
ScaI AGTACT 2 cut(s) 197, 674
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 1 cut(s) 617
SetI ASST 7 cut(s) 50, 246, 262, 299, 422, 590, 657
SfaNI GCATC 2 cut(s) 313, 473
SfuI TTCGAA 1 cut(s) 506
SmlI CTYRAG 2 cut(s) 434, 455
SmoI CTYRAG 2 cut(s) 434, 455
Sse9I AATT 4 cut(s) 384, 509, 599, 640
SsiI CCGC 5 cut(s) 35, 38, 316, 548, 633
SspMI CTAG 2 cut(s) 6, 300
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 2 cut(s) 330, 565
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 50
TaqI TCGA 4 cut(s) 178, 267, 488, 506
TasI AATT 4 cut(s) 384, 509, 599, 640
TatI WGTACW 3 cut(s) 170, 195, 672
TauI GCSGC 2 cut(s) 38, 550
TfiI GAWTC 5 cut(s) 9, 101, 126, 158, 503
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 149, 368
Tsp45I GTSAC 1 cut(s) 412
TspGWI ACGGA 5 cut(s) 74, 178, 246, 495, 632
XapI RAATTY 2 cut(s) 509, 640
XceI RCATGY 1 cut(s) 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 84
XmnI GAANNNNTTC 2 cut(s) 464, 734
XspI CTAG 2 cut(s) 6, 300
ZraI GACGTC 1 cut(s) 48
ZrmI AGTACT 2 cut(s) 197, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.