Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTTGGATAATTATGGGGGATATATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGCGGCTTTTGTTGCCAATAGTACCTACACTGTCACCAGCTTTACTCTTGTGCTTGAGTTCACCAAGGGCAGGCAGCAGCACCTGCATTGGAAAAGGGATGGGTGCGTCAAATGTTCTGGGAGCTCCAGCTTTGTTTGCCTGCACAATCGGGACTGTGCAATCAAGACAAATAGCTGCAAAACCCATGGAGGCACTGTGGATTGCAGCCTCAGGATCCAATTGGCATTTTCTGGGATGGATAAGCACCTATCCGTTTTGAACTCATGGTATGAAGCACAGAACCTTGGTCAGTACTCCCTTTATGGTCTGTATTCAAATCTGAAGGATTCTCTCACTAGGCAGTATAACAAGTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.85

Weight (kDa)

9.18

Isoelectric Point (pI)

28.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	156
Acc36I	ACCTGC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	2 cut(s)	274, 287
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	2 cut(s)	88, 359
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	325, 381
AluBI	AGCT	4 cut(s)	105, 189, 195, 240
AluI	AGCT	4 cut(s)	105, 189, 195, 240
Alw21I	GWGCWC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	274, 287
AlwNI	CAGNNNCTG	1 cut(s)	148
ApeKI	GCWGC	5 cut(s)	53, 139, 142, 240, 270
AsuHPI	GGTGA	2 cut(s)	91, 118
AxyI	CCTNAGG	1 cut(s)	275
BamHI	GGATCC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	5 cut(s)	40, 151, 154, 227, 282
BccI	CCATC	2 cut(s)	158, 295
BfaI	CTAG	1 cut(s)	402
BfuAI	ACCTGC	1 cut(s)	156
BisI	GCNGC	6 cut(s)	54, 69, 140, 143, 241, 271
BlsI	GCNGC	6 cut(s)	55, 70, 141, 144, 242, 272
BmcAI	AGTACT	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	129, 250, 349
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse21I	CCTNAGG	1 cut(s)	275
BseDI	CCNNGG	3 cut(s)	129, 250, 349
BseGI	GGATG	2 cut(s)	169, 306
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	289
BseXI	GCAGC	5 cut(s)	40, 151, 154, 227, 282
BseYI	CCCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	279
Bsp19I	CCATGG	1 cut(s)	250
BspACI	CCGC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	281
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	274, 287
BssECI	CCNNGG	3 cut(s)	129, 250, 349
BssMI	GATC	1 cut(s)	279
BssT1I	CCWWGG	3 cut(s)	129, 250, 349
Bst4CI	ACNGT	3 cut(s)	97, 221, 262
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	137, 206
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	169, 306
BstKTI	GATC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 148, 201
BstV1I	GCAGC	5 cut(s)	40, 151, 154, 227, 282
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	169, 306
BtsIMutI	CAGTG	2 cut(s)	93, 258
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	137, 206
CaiI	CAGNNNCTG	1 cut(s)	148
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	87, 358
CviAII	CATG	2 cut(s)	251, 330
CviJI	RGCY	6 cut(s)	71, 105, 189, 195, 240, 273
CviKI_1	RGCY	6 cut(s)	71, 105, 189, 195, 240, 273
CviQI	GTAC	2 cut(s)	87, 358
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	189
Eco130I	CCWWGG	3 cut(s)	129, 250, 349
Eco24I	GRGCYC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	407
Eco81I	CCTNAGG	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	189
EcoT14I	CCWWGG	3 cut(s)	129, 250, 349
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	3 cut(s)	129, 250, 349
FaeI	CATG	2 cut(s)	254, 333
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	2 cut(s)	250, 329
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	6 cut(s)	54, 69, 140, 143, 241, 271
FokI	GGATG	2 cut(s)	176, 313
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	6 cut(s)	54, 69, 140, 143, 241, 271
FspBI	CTAG	1 cut(s)	402
GluI	GCNGC	6 cut(s)	54, 69, 140, 143, 241, 271
GsaI	CCCAGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	175
HgaI	GACGC	1 cut(s)	160
Hin1II	CATG	2 cut(s)	254, 333
HinfI	GANTC	1 cut(s)	392
HphI	GGTGA	2 cut(s)	91, 118
Hpy166II	GTNNAC	2 cut(s)	63, 126
Hpy188I	TCNGA	2 cut(s)	387, 425
Hpy188III	TCNNGA	3 cut(s)	215, 229, 277
Hpy8I	GTNNAC	2 cut(s)	63, 126
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	3 cut(s)	97, 221, 262
HpyCH4V	TGCA	6 cut(s)	56, 151, 208, 224, 243, 270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 148, 201
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	254, 333
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	2 cut(s)	186, 194
LpnPI	CCDG	9 cut(s)	24, 115, 121, 161, 168, 205, 218, 262, 282
Lsp1109I	GCAGC	5 cut(s)	40, 151, 154, 227, 282
MaeI	CTAG	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	2 cut(s)	10, 284
MnlI	CCTC	2 cut(s)	248, 284
MslI	CAYNNNNRTG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	77, 148, 201
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	2 cut(s)	254, 333
NlaIV	GGNNCC	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	392
PkrI	GCNGC	6 cut(s)	55, 70, 141, 144, 242, 272
Psp124BI	GAGCTC	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	279
RsaI	GTAC	2 cut(s)	88, 359
RsaNI	GTAC	2 cut(s)	87, 358
RseI	CAYNNNNRTG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	191
SatI	GCNGC	6 cut(s)	54, 69, 140, 143, 241, 271
Sau3AI	GATC	1 cut(s)	279
ScaI	AGTACT	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	9 cut(s)	62, 92, 107, 150, 191, 197, 242, 315, 351
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	10, 284
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	402
SstI	GAGCTC	1 cut(s)	191
StyI	CCWWGG	3 cut(s)	129, 250, 349
TaaI	ACNGT	3 cut(s)	97, 221, 262
TasI	AATT	2 cut(s)	10, 284
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	392
TscAI	CASTG	2 cut(s)	100, 265
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	5 cut(s)	53, 139, 142, 240, 270
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	2 cut(s)	100, 265
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.