RchiOBHm_Chr3g0487051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003126
Physical Location & Seq
Forward (+)
34192817 .. 34193104
288 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45149

Sequence Viewer

Length: 288 bp
ATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGTGGCTTTTGTTGCCAATAGTACCTACACTGTCTCCATCTTCATTTGCCTGCACAATCGGGACTGTGCAATCAAGACAAACAGCTGCAAAACCCATGGAGGCACTGTGGATTGCAGCCTCAGGATCCAATTGGCATTTTCTTGCACGGATAAGCACCTATCCTTTCTGAACTCATGGTATGAAGCACAGAACCTTGGTCAGTACTCCCTTTATGGTCTGTATTCAAATCTGAAGGATTCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.58

Weight (kDa)

8.65

Isoelectric Point (pI)

28.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 38
AclWI GGATC 2 cut(s) 160, 173
AfaI GTAC 2 cut(s) 64, 245
AgsI TTSAA 1 cut(s) 267
AluBI AGCT 1 cut(s) 126
AluI AGCT 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 2 cut(s) 160, 173
ApeKI GCWGC 3 cut(s) 29, 126, 156
AxyI CCTNAGG 1 cut(s) 161
BamHI GGATCC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 16, 113, 168
BccI CCATC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 286
BisI GCNGC 3 cut(s) 30, 127, 157
BlsI GCNGC 3 cut(s) 31, 128, 158
BmcAI AGTACT 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 136, 235
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 132, 162
Bse21I CCTNAGG 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 136, 235
BseMII CTCAG 1 cut(s) 175
BseXI GCAGC 3 cut(s) 16, 113, 168
BseYI CCCAGC 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 165
Bsp19I CCATGG 1 cut(s) 136
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 167
BspPI GGATC 2 cut(s) 160, 173
BssECI CCNNGG 2 cut(s) 136, 235
BssMI GATC 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 136, 235
Bst4CI ACNGT 4 cut(s) 43, 73, 107, 148
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 161
BstDSI CCRYGG 1 cut(s) 136
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstV1I GCAGC 3 cut(s) 16, 113, 168
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
Bsu36I CCTNAGG 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 69, 144
Cac8I GCNNGC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 63, 244
CviAII CATG 2 cut(s) 137, 216
CviJI RGCY 3 cut(s) 47, 126, 159
CviKI_1 RGCY 3 cut(s) 47, 126, 159
CviQI GTAC 2 cut(s) 63, 244
DdeI CTNAG 1 cut(s) 161
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Eco130I CCWWGG 2 cut(s) 136, 235
Eco81I CCTNAGG 1 cut(s) 161
EcoT14I CCWWGG 2 cut(s) 136, 235
ErhI CCWWGG 2 cut(s) 136, 235
FaeI CATG 2 cut(s) 140, 219
FaiI YATR 6 cut(s) 21, 27, 138, 217, 222, 255
FaqI GGGAC 1 cut(s) 116
FatI CATG 2 cut(s) 136, 215
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 3 cut(s) 30, 127, 157
Fsp4HI GCNGC 3 cut(s) 30, 127, 157
FspBI CTAG 1 cut(s) 286
GluI GCNGC 3 cut(s) 30, 127, 157
GsaI CCCAGC 1 cut(s) 18
Hin1II CATG 2 cut(s) 140, 219
HinfI GANTC 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 2 cut(s) 210, 273
Hpy188III TCNNGA 3 cut(s) 101, 115, 163
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 4 cut(s) 43, 73, 107, 148
HpyCH4V TGCA 6 cut(s) 32, 94, 110, 129, 156, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 161
Hsp92II CATG 2 cut(s) 140, 219
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 2 cut(s) 104, 148
Lsp1109I GCAGC 3 cut(s) 16, 113, 168
MaeI CTAG 1 cut(s) 286
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 1 cut(s) 73
MfeI CAATTG 1 cut(s) 170
MflI RGATCY 1 cut(s) 165
MluCI AATT 1 cut(s) 170
MnlI CCTC 2 cut(s) 134, 170
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 126
MunI CAATTG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 53
NcoI CCATGG 1 cut(s) 136
NdeII GATC 1 cut(s) 165
NlaIII CATG 2 cut(s) 140, 219
NlaIV GGNNCC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 3 cut(s) 31, 128, 158
PspFI CCCAGC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 167
PsuI RGATCY 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 126
RsaI GTAC 2 cut(s) 64, 245
RsaNI GTAC 2 cut(s) 63, 244
RseI CAYNNNNRTG 1 cut(s) 24
SatI GCNGC 3 cut(s) 30, 127, 157
Sau3AI GATC 1 cut(s) 165
ScaI AGTACT 1 cut(s) 245
SetI ASST 5 cut(s) 38, 68, 128, 201, 237
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 1 cut(s) 170
SspMI CTAG 1 cut(s) 286
StyI CCWWGG 2 cut(s) 136, 235
TaaI ACNGT 4 cut(s) 43, 73, 107, 148
TasI AATT 1 cut(s) 170
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 278
TscAI CASTG 2 cut(s) 76, 151
TseI GCWGC 3 cut(s) 29, 126, 156
TspDTI ATGAA 2 cut(s) 73, 237
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 2 cut(s) 76, 151
XmiI GTMKAC 1 cut(s) 38
XspI CTAG 1 cut(s) 286
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.