Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Forward (+)

20119388 .. 20119801

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1202900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTCGTTCAATCCGGATGCTTATGGGTTTATGGTTGCTTTTGCTGGGCGAAATTATGTTACAAGGTCTCTTCCTACTTTTGTTGCTAATGGTACCTACACTGTTACCACCTTTACCCTTGTGCTTGAGTTCAACAAGGGCAGGCTGCAGAACTTGTACTGGAAAAAGGATAGGTGCTCTAAATGTTCAGGGAGCTCTGACTTTGTTTGCCTCAACAATCAGAACTGCGCCTTCAAGACCTCGAGCTGCAAAAACCATGGCGGCTCTGTGGACTGCAGCATCATAATCCAGTTGGCATTTTTCGGCACAAACAAGCACCTTTCGGTTCTTAACTCATGGAGATCGATGTCTTCACATTCGTGTATATACAAGTGGGTGGTGTCAAAAAGGCTGCCCAAGCAGTTGTCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.42

Weight (kDa)

9.61

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	92
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	1 cut(s)	261
AfaI	GTAC	2 cut(s)	94, 158
AgsI	TTSAA	3 cut(s)	10, 133, 235
AleI	CACNNNNGTG	1 cut(s)	358
AluBI	AGCT	2 cut(s)	195, 246
AluI	AGCT	2 cut(s)	195, 246
Alw21I	GWGCWC	2 cut(s)	179, 197
Alw26I	GTCTC	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	241
Aor13HI	TCCGGA	1 cut(s)	13
ApeKI	GCWGC	4 cut(s)	145, 246, 276, 391
Asp718I	GGTACC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	230
AvaI	CYCGRG	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	2 cut(s)	179, 197
BbvI	GCAGC	4 cut(s)	132, 233, 288, 378
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	146, 274
BisI	GCNGC	5 cut(s)	146, 247, 262, 277, 392
BlsI	GCNGC	5 cut(s)	147, 248, 263, 278, 393
BmeT110I	CYCGRG	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	94
BmsI	GCATC	2 cut(s)	7, 288
BpiI	GAAGAC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	13
Bse1I	ACTGG	2 cut(s)	164, 289
BseAI	TCCGGA	1 cut(s)	13
BseCI	ATCGAT	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	22
BseNI	ACTGG	2 cut(s)	164, 289
BseXI	GCAGC	4 cut(s)	132, 233, 288, 378
BseYI	CCCAGC	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	92
BshVI	ATCGAT	1 cut(s)	344
BsiHKAI	GWGCWC	2 cut(s)	179, 197
BsiHKCI	CYCGRG	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	179, 197
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	341
Bsp19I	CCATGG	1 cut(s)	256
BspACI	CCGC	1 cut(s)	261
BspDI	ATCGAT	1 cut(s)	344
BspEI	TCCGGA	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	94
BspMAI	CTGCAG	2 cut(s)	150, 278
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	164, 289
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	143
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	1 cut(s)	344
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstSFI	CTRYAG	2 cut(s)	146, 274
BstV1I	GCAGC	4 cut(s)	132, 233, 288, 378
BstV2I	GAAGAC	1 cut(s)	342
Bsu15I	ATCGAT	1 cut(s)	344
BsuTUI	ATCGAT	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	143
CfoI	GCGC	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	93, 157
CviAII	CATG	2 cut(s)	257, 336
CviJI	RGCY	5 cut(s)	145, 195, 246, 264, 391
CviKI_1	RGCY	5 cut(s)	145, 195, 246, 264, 391
CviQI	GTAC	2 cut(s)	93, 157
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	260, 339
FaiI	YATR	8 cut(s)	24, 32, 57, 258, 284, 337, 365, 367
FatI	CATG	2 cut(s)	256, 335
Fnu4HI	GCNGC	5 cut(s)	146, 247, 262, 277, 392
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	5 cut(s)	146, 247, 262, 277, 392
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	5 cut(s)	146, 247, 262, 277, 392
GsaI	CCCAGC	1 cut(s)	48
HapII	CCGG	1 cut(s)	14
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	260, 339
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HpaII	CCGG	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	199, 222
Hpy188III	TCNNGA	2 cut(s)	14, 235
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	3 cut(s)	148, 249, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
Hsp92II	CATG	2 cut(s)	260, 339
HspAI	GCGC	1 cut(s)	228
Kpn2I	TCCGGA	1 cut(s)	13
KpnI	GGTACC	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	341
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	6 cut(s)	27, 30, 127, 145, 174, 302
Lsp1109I	GCAGC	4 cut(s)	132, 233, 288, 378
LweI	GCATC	2 cut(s)	7, 288
MaeIII	GTNAC	3 cut(s)	58, 103, 405
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MboII	GAAGA	2 cut(s)	62, 342
MhlI	GDGCHC	2 cut(s)	179, 197
MluCI	AATT	1 cut(s)	52
MnlI	CCTC	2 cut(s)	221, 250
MroI	TCCGGA	1 cut(s)	13
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	358
MspI	CCGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	397
NcoI	CCATGG	1 cut(s)	256
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	2 cut(s)	260, 339
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	405
OliI	CACNNNNGTG	1 cut(s)	358
PaeR7I	CTCGAG	1 cut(s)	241
PkrI	GCNGC	5 cut(s)	147, 248, 263, 278, 393
Psp124BI	GAGCTC	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	94
PspXI	VCTCGAGB	1 cut(s)	241
PstI	CTGCAG	2 cut(s)	150, 278
RsaI	GTAC	2 cut(s)	94, 158
RsaNI	GTAC	2 cut(s)	93, 157
RseI	CAYNNNNRTG	1 cut(s)	358
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	5 cut(s)	146, 247, 262, 277, 392
Sau3AI	GATC	1 cut(s)	341
SduI	GDGCHC	2 cut(s)	179, 197
SetI	ASST	8 cut(s)	68, 98, 113, 176, 197, 242, 248, 321
SfaNI	GCATC	2 cut(s)	7, 288
SfcI	CTRYAG	2 cut(s)	146, 274
Sfr274I	CTCGAG	1 cut(s)	241
SlaI	CTCGAG	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	358
SmlI	CTYRAG	2 cut(s)	125, 241
SmoI	CTYRAG	2 cut(s)	125, 241
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	2 cut(s)	242, 344
TasI	AATT	1 cut(s)	52
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	405
TseI	GCWGC	4 cut(s)	145, 246, 276, 391
Tsp45I	GTSAC	1 cut(s)	405
TspRI	CASTG	1 cut(s)	106
XhoI	CTCGAG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.