Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Reverse (-)

34497613 .. 34506855

Gene Structure 9243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG173300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGCGGCTTTTGTTGCCAATAGTACCTACACTGTCACCAGGTTTACTCTTGTGCTTGAGTTCACCAAGGGTAGGCTGCAGCACCTGCATTGGAAAAGGGATGGGTGCGTCAAATGTTCTGGGAGCTCCAACTTCGTTTGCCTGCACAATCGGGACTGTGCAATCAAGACAAACAGCTGCAAAACCCATGGAGGCACTGTGGATTGCAGCCTCAAGATCCAATTGGCATTTTCTGGGACGGATAAGCACCTATCCGTTCTGAACTCATGGTATGAATCACAGAACCTTGGTCAGTACTCCCTTTATGTTTTACAGGCAAGTGATCAAGTTGATTTGTTCCTCTTACCAGGAGTAGCATTTGACAGACCTGGAAGACGTTTGGCTTGCGGCAGAGGCAAATCTTGCTCAAGTGAGGGAGGCAAATCAAGGCAGATCAAGCAGAAAGACAAGAAATGCAACTTGCATAGCGAGTTGATGGCTGCGAAGTCTACTGCAGCTCAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.9

Weight (kDa)

9.53

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	132
AccI	GTMKAC	2 cut(s)	38, 527
AciI	CCGC	2 cut(s)	44, 426
AclWI	GGATC	1 cut(s)	250
AfaI	GTAC	2 cut(s)	64, 335
AfiI	CCNNNNNNNGG	1 cut(s)	111
AjnI	CCWGG	3 cut(s)	77, 385, 406
AluBI	AGCT	3 cut(s)	165, 216, 536
AluI	AGCT	3 cut(s)	165, 216, 536
Alw21I	GWGCWC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	250
AlwNI	CAGNNNCTG	1 cut(s)	124
ApeKI	GCWGC	7 cut(s)	29, 115, 118, 216, 246, 518, 533
AsuHPI	GGTGA	2 cut(s)	67, 94
BanII	GRGCYC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	6 cut(s)	16, 102, 130, 203, 258, 505
BccI	CCATC	2 cut(s)	134, 508
BciT130I	CCWGG	3 cut(s)	79, 387, 408
BclI	TGATCA	1 cut(s)	361
BfmI	CTRYAG	2 cut(s)	116, 531
BfuAI	ACCTGC	1 cut(s)	132
BisI	GCNGC	9 cut(s)	30, 45, 116, 119, 217, 247, 427, 519, 534
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	9 cut(s)	31, 46, 117, 120, 218, 248, 428, 520, 535
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	3 cut(s)	79, 387, 408
BmrFI	CCNGG	3 cut(s)	79, 387, 408
BpiI	GAAGAC	1 cut(s)	418
Bpu1102I	GCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	3 cut(s)	116, 236, 430
BsaJI	CCNNGG	3 cut(s)	105, 226, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
BseBI	CCWGG	3 cut(s)	79, 387, 408
BseDI	CCNNGG	3 cut(s)	105, 226, 325
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseXI	GCAGC	6 cut(s)	16, 102, 130, 203, 258, 505
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	206, 289
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	206, 289
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	255, 361, 471
Bsp1720I	GCTNAGC	1 cut(s)	537
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	2 cut(s)	44, 426
BspMAI	CTGCAG	2 cut(s)	120, 535
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	250
BssECI	CCNNGG	3 cut(s)	105, 226, 325
BssMI	GATC	3 cut(s)	255, 361, 471
BssT1I	CCWWGG	3 cut(s)	105, 226, 325
Bst2UI	CCWGG	3 cut(s)	79, 387, 408
Bst4CI	ACNGT	3 cut(s)	73, 197, 238
BstAPI	GCANNNNNTGC	2 cut(s)	124, 441
BstC8I	GCNNGC	2 cut(s)	182, 424
BstDEI	CTNAG	1 cut(s)	537
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	3 cut(s)	258, 364, 474
BstMBI	GATC	3 cut(s)	255, 361, 471
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 124, 432, 441, 475
BstNI	CCWGG	3 cut(s)	79, 387, 408
BstSCI	CCNGG	3 cut(s)	77, 385, 406
BstSFI	CTRYAG	2 cut(s)	116, 531
BstV1I	GCAGC	6 cut(s)	16, 102, 130, 203, 258, 505
BstV2I	GAAGAC	1 cut(s)	418
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	69, 234
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	182, 424
CaiI	CAGNNNCTG	1 cut(s)	124
CseI	GACGC	1 cut(s)	136
CsiI	ACCWGGT	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	63, 334
CviAII	CATG	2 cut(s)	227, 306
CviJI	RGCY	8 cut(s)	47, 115, 165, 216, 249, 422, 518, 536
CviKI_1	RGCY	8 cut(s)	47, 115, 165, 216, 249, 422, 518, 536
CviQI	GTAC	2 cut(s)	63, 334
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	3 cut(s)	257, 363, 473
DpnII	GATC	3 cut(s)	255, 361, 471
Ecl136II	GAGCTC	1 cut(s)	165
Eco130I	CCWWGG	3 cut(s)	105, 226, 325
Eco24I	GRGCYC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	165
EcoRII	CCWGG	3 cut(s)	77, 385, 406
EcoT14I	CCWWGG	3 cut(s)	105, 226, 325
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	3 cut(s)	105, 226, 325
FaeI	CATG	2 cut(s)	230, 309
FaiI	YATR	7 cut(s)	21, 27, 228, 307, 312, 345, 504
FaqI	GGGAC	2 cut(s)	206, 289
FatI	CATG	2 cut(s)	226, 305
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	2 cut(s)	38, 527
Fnu4HI	GCNGC	9 cut(s)	30, 45, 116, 119, 217, 247, 427, 519, 534
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	9 cut(s)	30, 45, 116, 119, 217, 247, 427, 519, 534
GluI	GCNGC	9 cut(s)	30, 45, 116, 119, 217, 247, 427, 519, 534
GsaI	CCCAGC	1 cut(s)	18
HgaI	GACGC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	230, 309
HinfI	GANTC	1 cut(s)	314
HphI	GGTGA	2 cut(s)	67, 94
Hpy166II	GTNNAC	4 cut(s)	39, 84, 102, 528
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	3 cut(s)	191, 205, 253
Hpy8I	GTNNAC	4 cut(s)	39, 84, 102, 528
HpyCH4III	ACNGT	3 cut(s)	73, 197, 238
HpyCH4IV	ACGT	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 124, 432, 441, 475
HpyF3I	CTNAG	1 cut(s)	537
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	2 cut(s)	230, 309
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	255, 361, 471
LmnI	GCTCC	2 cut(s)	162, 170
Lsp1109I	GCAGC	6 cut(s)	16, 102, 130, 203, 258, 505
MabI	ACCWGGT	1 cut(s)	77
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	3 cut(s)	257, 363, 473
MboI	GATC	3 cut(s)	255, 361, 471
MboII	GAAGA	1 cut(s)	423
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	6 cut(s)	224, 260, 389, 425, 445, 449
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	216
MspR9I	CCNGG	3 cut(s)	79, 387, 408
MunI	CAATTG	1 cut(s)	260
MvaI	CCWGG	3 cut(s)	79, 387, 408
MwoI	GCNNNNNNNGC	5 cut(s)	53, 124, 432, 441, 475
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	3 cut(s)	255, 361, 471
NlaIII	CATG	2 cut(s)	230, 309
NmuCI	GTSAC	1 cut(s)	73
PaqCI	CACCTGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	9 cut(s)	31, 46, 117, 120, 218, 248, 428, 520, 535
Psp124BI	GAGCTC	1 cut(s)	167
Psp6I	CCWGG	3 cut(s)	77, 385, 406
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	3 cut(s)	77, 385, 406
PstI	CTGCAG	2 cut(s)	120, 535
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	255
PvuII	CAGCTG	1 cut(s)	216
RsaI	GTAC	2 cut(s)	64, 335
RsaNI	GTAC	2 cut(s)	63, 334
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	167
SatI	GCNGC	9 cut(s)	30, 45, 116, 119, 217, 247, 427, 519, 534
Sau3AI	GATC	3 cut(s)	255, 361, 471
ScaI	AGTACT	1 cut(s)	335
ScrFI	CCNGG	3 cut(s)	79, 387, 408
SduI	GDGCHC	1 cut(s)	167
SexAI	ACCWGGT	1 cut(s)	77
SfcI	CTRYAG	2 cut(s)	116, 531
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	3 cut(s)	95, 251, 445
SmoI	CTYRAG	3 cut(s)	95, 251, 445
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	2 cut(s)	44, 426
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	3 cut(s)	77, 385, 406
StyI	CCWWGG	3 cut(s)	105, 226, 325
TaaI	ACNGT	3 cut(s)	73, 197, 238
TaiI	ACGT	1 cut(s)	418
TasI	AATT	1 cut(s)	260
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	2 cut(s)	47, 429
TfiI	GAWTC	1 cut(s)	314
TscAI	CASTG	2 cut(s)	76, 241
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	7 cut(s)	29, 115, 118, 216, 246, 518, 533
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	327
TspGWI	ACGGA	2 cut(s)	283, 293
TspRI	CASTG	2 cut(s)	76, 241
XmiI	GTMKAC	2 cut(s)	38, 527
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.