Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Forward (+)

28017533 .. 28018619

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCCGTCCCCGCAACCACATGGACGGCGATCTTCATCATCGCCGCCATGCTCCGTTTAATCGAATGCGGCGACAACAACCGCGTCTACTCGCCGTGCTCCGACACCAAGGTCGCCAGGTCCGACGGCTTCAGCTTCGGGATCGCCTTCGCGACCAGGGACGCGTTTCTCCGTAACGGCGCAAACTCTACCTCCCAGTTGTCCCCGTGCGACACTAGACTCTTGCTCTCCACCGCCAATTCTCAGATCGCCGTTTTCCGGCCAAAGGTCGACGAGATCTCTCTCCTCTCCGTCAACTCCTCCTCTTTCGCTCCGGATAGTTATGGGGGATATATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGTGGCTTTTGTTGCCAATAGTACCTACACTGTCACCAGCTTTACTCTTGTGCTTGAGTTCACCAAGGGCAGGCTGCAGCACCTGTATTGGAAAAGGGATGGGTGCGCCAAATGTTCTGGGAGCAGCTCCAGCTTCGTTTGCCTCAACAATCAGGACTGTGCAATCAAGACAAATAGCTGCAAAACCCATGGAGGCACTGTGGATTGCAGCCTCGGGATCCAATTGGCATTTTCTGGGACGGATAAGCACCTATCGGTTCTGAACTCATGGTATGAAGTACAGAACCTTGGTCAGTACTCCCTTTATGGTCTCTATTCAAATCTGAAGGATTCTCTCACTAGCCAGTATAACAAGTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

26.72

Weight (kDa)

8.7

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AccI	GTMKAC	3 cut(s)	87, 270, 371
AccII	CGCG	3 cut(s)	84, 152, 164
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	5 cut(s)	12, 45, 69, 82, 234
AclWI	GGATC	3 cut(s)	149, 586, 599
AcoI	YGGCCR	2 cut(s)	3, 260
AcuI	CTGAAG	2 cut(s)	115, 719
AfaI	GTAC	3 cut(s)	397, 654, 671
AfiI	CCNNNNNNNGG	3 cut(s)	258, 265, 444
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	693
AjnI	CCWGG	2 cut(s)	116, 155
AluBI	AGCT	5 cut(s)	135, 414, 501, 507, 552
AluI	AGCT	5 cut(s)	135, 414, 501, 507, 552
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	689
AlwI	GGATC	3 cut(s)	149, 586, 599
AlwNI	CAGNNNCTG	1 cut(s)	457
Ama87I	CYCGRG	1 cut(s)	587
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	2 cut(s)	3, 260
ApeKI	GCWGC	6 cut(s)	362, 448, 451, 498, 552, 582
AspLEI	GCGC	2 cut(s)	182, 482
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	400, 427
AvaI	CYCGRG	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	120
BamHI	GGATCC	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	6 cut(s)	349, 435, 463, 510, 539, 594
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	5 cut(s)	42, 79, 142, 193, 236
BciT130I	CCWGG	2 cut(s)	118, 157
BcoDI	GTCTC	1 cut(s)	689
BfaI	CTAG	2 cut(s)	216, 714
BfmI	CTRYAG	1 cut(s)	449
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	8 cut(s)	45, 70, 363, 449, 452, 499, 553, 583
BlsI	GCNGC	8 cut(s)	46, 71, 364, 450, 453, 500, 554, 584
BmcAI	AGTACT	1 cut(s)	671
Bme1390I	CCNGG	2 cut(s)	118, 157
Bme18I	GGWCC	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	593
BmrFI	CCNGG	2 cut(s)	118, 157
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BpmI	CTGGAG	1 cut(s)	487
BpuEI	CTTGAG	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	6 cut(s)	108, 156, 438, 562, 586, 661
BsaWI	WCCGGW	1 cut(s)	313
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 558, 588
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 265, 444
Bse1I	ACTGG	2 cut(s)	196, 718
Bse8I	GATNNNNATC	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	2 cut(s)	118, 157
BseDI	CCNNGG	6 cut(s)	108, 156, 438, 562, 586, 661
BseGI	GGATG	1 cut(s)	478
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	3 cut(s)	258, 265, 444
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	2 cut(s)	196, 718
BseRI	GAGGAG	3 cut(s)	275, 289, 292
BseXI	GCAGC	6 cut(s)	349, 435, 463, 510, 539, 594
BseYI	CCCAGC	1 cut(s)	347
Bsh1236I	CGCG	3 cut(s)	84, 152, 164
BshFI	GGCC	2 cut(s)	5, 262
BsiHKAI	GWGCWC	1 cut(s)	101
BsiHKCI	CYCGRG	1 cut(s)	587
BsiSI	CCGG	2 cut(s)	259, 314
BslFI	GGGAC	3 cut(s)	173, 187, 625
BslI	CCNNNNNNNGG	3 cut(s)	258, 265, 444
BsmAI	GTCTC	1 cut(s)	689
BsmFI	GGGAC	3 cut(s)	173, 187, 625
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	5, 262
Bso31I	GGTCTC	1 cut(s)	689
BsoBI	CYCGRG	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	5 cut(s)	30, 141, 246, 276, 591
Bsp19I	CCATGG	1 cut(s)	562
Bsp68I	TCGCGA	1 cut(s)	152
BspACI	CCGC	5 cut(s)	12, 45, 69, 82, 234
BspANI	GGCC	2 cut(s)	5, 262
BspCNI	CTCAG	1 cut(s)	256
BspEI	TCCGGA	1 cut(s)	313
BspFNI	CGCG	3 cut(s)	84, 152, 164
BspLI	GGNNCC	1 cut(s)	593
BspMAI	CTGCAG	1 cut(s)	453
BspPI	GGATC	3 cut(s)	149, 586, 599
BspTNI	GGTCTC	1 cut(s)	689
BsrI	ACTGG	2 cut(s)	196, 718
BssECI	CCNNGG	6 cut(s)	108, 156, 438, 562, 586, 661
BssMI	GATC	5 cut(s)	30, 141, 246, 276, 591
BssT1I	CCWWGG	4 cut(s)	108, 438, 562, 661
Bst2UI	CCWGG	2 cut(s)	118, 157
Bst4CI	ACNGT	4 cut(s)	376, 406, 533, 574
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	3 cut(s)	84, 152, 164
BstHHI	GCGC	2 cut(s)	182, 482
BstKTI	GATC	5 cut(s)	33, 144, 249, 279, 594
BstMAI	GTCTC	1 cut(s)	689
BstMBI	GATC	5 cut(s)	30, 141, 246, 276, 591
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 386, 504, 513
BstNI	CCWGG	2 cut(s)	118, 157
BstSCI	CCNGG	2 cut(s)	116, 155
BstSFI	CTRYAG	1 cut(s)	449
BstUI	CGCG	3 cut(s)	84, 152, 164
BstV1I	GCAGC	6 cut(s)	349, 435, 463, 510, 539, 594
BstX2I	RGATCY	2 cut(s)	276, 591
BstYI	RGATCY	2 cut(s)	276, 591
BsuRI	GGCC	2 cut(s)	5, 262
BtgI	CCRYGG	1 cut(s)	562
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	402, 570
BtuMI	TCGCGA	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	446
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	2 cut(s)	182, 482
Cfr13I	GGNCC	1 cut(s)	120
CseI	GACGC	2 cut(s)	73, 170
Csp6I	GTAC	3 cut(s)	396, 653, 670
CviAII	CATG	4 cut(s)	21, 49, 563, 642
CviQI	GTAC	3 cut(s)	396, 653, 670
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	5 cut(s)	32, 143, 248, 278, 593
DpnII	GATC	5 cut(s)	30, 141, 246, 276, 591
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	2 cut(s)	3, 260
Eco130I	CCWWGG	4 cut(s)	108, 438, 562, 661
Eco31I	GGTCTC	1 cut(s)	689
Eco47I	GGWCC	1 cut(s)	120
Eco57I	CTGAAG	2 cut(s)	115, 719
Eco88I	CYCGRG	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	116, 155
EcoT14I	CCWWGG	4 cut(s)	108, 438, 562, 661
ErhI	CCWWGG	4 cut(s)	108, 438, 562, 661
FaeI	CATG	4 cut(s)	24, 52, 566, 645
FaqI	GGGAC	3 cut(s)	173, 187, 625
FatI	CATG	4 cut(s)	20, 48, 562, 641
FauI	CCCGC	1 cut(s)	19
FblI	GTMKAC	3 cut(s)	87, 270, 371
Fnu4HI	GCNGC	8 cut(s)	45, 70, 363, 449, 452, 499, 553, 583
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	8 cut(s)	45, 70, 363, 449, 452, 499, 553, 583
FspBI	CTAG	2 cut(s)	216, 714
GlaI	GCGC	2 cut(s)	181, 481
GluI	GCNGC	8 cut(s)	45, 70, 363, 449, 452, 499, 553, 583
GsaI	CCCAGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	487
HaeIII	GGCC	2 cut(s)	5, 262
HapII	CCGG	2 cut(s)	259, 314
HgaI	GACGC	2 cut(s)	73, 170
HhaI	GCGC	2 cut(s)	182, 482
Hin1II	CATG	4 cut(s)	24, 52, 566, 645
Hin6I	GCGC	2 cut(s)	180, 480
HinP1I	GCGC	2 cut(s)	180, 480
HincII	GTYRAC	2 cut(s)	271, 295
HindII	GTYRAC	2 cut(s)	271, 295
HinfI	GANTC	2 cut(s)	219, 704
HpaII	CCGG	2 cut(s)	259, 314
HphI	GGTGA	2 cut(s)	400, 427
Hpy166II	GTNNAC	5 cut(s)	88, 271, 295, 372, 435
Hpy188I	TCNGA	6 cut(s)	103, 124, 246, 636, 699, 737
Hpy188III	TCNNGA	6 cut(s)	139, 151, 314, 527, 541, 589
Hpy8I	GTNNAC	5 cut(s)	88, 271, 295, 372, 435
Hpy99I	CGWCG	2 cut(s)	128, 275
HpyAV	CCTTC	2 cut(s)	157, 694
HpyCH4III	ACNGT	4 cut(s)	376, 406, 533, 574
HpyCH4V	TGCA	5 cut(s)	365, 451, 536, 555, 582
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 386, 504, 513
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	4 cut(s)	24, 52, 566, 645
HspAI	GCGC	2 cut(s)	180, 480
Kpn2I	TCCGGA	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	30, 141, 246, 276, 591
LmnI	GCTCC	5 cut(s)	57, 104, 316, 495, 506
Lsp1109I	GCAGC	6 cut(s)	349, 435, 463, 510, 539, 594
MaeI	CTAG	2 cut(s)	216, 714
MaeIII	GTNAC	2 cut(s)	173, 406
MalI	GATC	5 cut(s)	32, 143, 248, 278, 593
MboI	GATC	5 cut(s)	30, 141, 246, 276, 591
MboII	GAAGA	1 cut(s)	25
MfeI	CAATTG	1 cut(s)	596
MflI	RGATCY	2 cut(s)	276, 591
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	2 cut(s)	238, 596
MluI	ACGCGT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	2 cut(s)	126, 147
MnlI	CCTC	7 cut(s)	202, 296, 310, 313, 527, 560, 596
MroI	TCCGGA	1 cut(s)	313
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	2 cut(s)	259, 314
MspR9I	CCNGG	2 cut(s)	118, 157
MunI	CAATTG	1 cut(s)	596
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	2 cut(s)	118, 157
MvnI	CGCG	3 cut(s)	84, 152, 164
MwoI	GCNNNNNNNGC	4 cut(s)	11, 386, 504, 513
NcoI	CCATGG	1 cut(s)	562
NdeII	GATC	5 cut(s)	30, 141, 246, 276, 591
NlaIII	CATG	4 cut(s)	24, 52, 566, 645
NlaIV	GGNNCC	1 cut(s)	593
NmuCI	GTSAC	1 cut(s)	406
NruI	TCGCGA	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 120
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	704
PkrI	GCNGC	8 cut(s)	46, 71, 364, 450, 453, 500, 554, 584
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	116, 155
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	2 cut(s)	116, 155
PspN4I	GGNNCC	1 cut(s)	593
PspPI	GGNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	453
PstNI	CAGNNNCTG	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	276, 591
RruI	TCGCGA	1 cut(s)	152
RsaI	GTAC	3 cut(s)	397, 654, 671
RsaNI	GTAC	3 cut(s)	396, 653, 670
RseI	CAYNNNNRTG	1 cut(s)	357
SalI	GTCGAC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	8 cut(s)	45, 70, 363, 449, 452, 499, 553, 583
Sau3AI	GATC	5 cut(s)	30, 141, 246, 276, 591
Sau96I	GGNCC	1 cut(s)	120
ScaI	AGTACT	1 cut(s)	671
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	118, 157
SduI	GDGCHC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	449
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	2 cut(s)	238, 596
SsiI	CCGC	5 cut(s)	12, 45, 69, 82, 234
SspMI	CTAG	2 cut(s)	216, 714
StyD4I	CCNGG	2 cut(s)	116, 155
StyI	CCWWGG	4 cut(s)	108, 438, 562, 661
TaaI	ACNGT	4 cut(s)	376, 406, 533, 574
TaqI	TCGA	2 cut(s)	63, 270
TasI	AATT	2 cut(s)	238, 596
TatI	WGTACW	2 cut(s)	652, 669
TauI	GCSGC	2 cut(s)	47, 72
TfiI	GAWTC	1 cut(s)	704
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	2 cut(s)	409, 577
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	6 cut(s)	362, 448, 451, 498, 552, 582
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	25, 663
TspGWI	ACGGA	4 cut(s)	44, 161, 280, 629
TspRI	CASTG	2 cut(s)	409, 577
VpaK11BI	GGWCC	1 cut(s)	120
XmiI	GTMKAC	3 cut(s)	87, 270, 371
XspI	CTAG	2 cut(s)	216, 714
ZrmI	AGTACT	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.