Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Reverse (-)

26298979 .. 26299600

Gene Structure 622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31171

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTTGGATAATTATGGGGGATATATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGCGGCTTTTGTTGCCAATAGTACCTACACTGTCACCAGCTTTACTCTTCACCTGCATTGGAAAAGGGATGGGTGCGTCAAATGTTCTGGGAGCTCCAGCTTCGTTTGCCTGCACAATCAGGACTGTGCAATCAAGACAAACAGCTGCAAAACCCATGGAGGCACTTTGGATTGCAGCCTCAGGATCCAATTGGCATTTTCTGGGACGGATAAGCACCTATCCATTCTGAACTCATGGTATGAAGCACAGAACCTTGGTCAGTACTCCCTTTATGGTCTGTATTCAAATCTGAAGGATTCTCTCACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.74

Weight (kDa)

8.54

Isoelectric Point (pI)

28.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	2 cut(s)	244, 257
AcuI	CTGAAG	1 cut(s)	377
AfaI	GTAC	2 cut(s)	88, 329
AgsI	TTSAA	1 cut(s)	351
AluBI	AGCT	5 cut(s)	105, 159, 165, 210, 375
AluI	AGCT	5 cut(s)	105, 159, 165, 210, 375
Alw21I	GWGCWC	1 cut(s)	161
AlwI	GGATC	2 cut(s)	244, 257
ApeKI	GCWGC	3 cut(s)	53, 210, 240
AsuHPI	GGTGA	2 cut(s)	91, 107
AxyI	CCTNAGG	1 cut(s)	245
BamHI	GGATCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	40, 197, 252
BccI	CCATC	1 cut(s)	128
BfaI	CTAG	2 cut(s)	372, 376
BfuAI	ACCTGC	1 cut(s)	126
BisI	GCNGC	4 cut(s)	54, 69, 211, 241
BlsI	GCNGC	4 cut(s)	55, 70, 212, 242
BmcAI	AGTACT	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	145
BsaJI	CCNNGG	2 cut(s)	220, 319
Bse21I	CCTNAGG	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	220, 319
BseGI	GGATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	259
BseXI	GCAGC	3 cut(s)	40, 197, 252
BseYI	CCCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	249
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	251
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	2 cut(s)	244, 257
BssECI	CCNNGG	2 cut(s)	220, 319
BssMI	GATC	1 cut(s)	249
BssT1I	CCWWGG	2 cut(s)	220, 319
Bst4CI	ACNGT	2 cut(s)	97, 191
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 171
BstV1I	GCAGC	3 cut(s)	40, 197, 252
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	176
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	87, 328
CviAII	CATG	2 cut(s)	221, 300
CviJI	RGCY	7 cut(s)	71, 105, 159, 165, 210, 243, 375
CviKI_1	RGCY	7 cut(s)	71, 105, 159, 165, 210, 243, 375
CviQI	GTAC	2 cut(s)	87, 328
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	220, 319
Eco24I	GRGCYC	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	377
Eco81I	CCTNAGG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	220, 319
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	2 cut(s)	220, 319
FaeI	CATG	2 cut(s)	224, 303
FaiI	YATR	9 cut(s)	15, 24, 26, 45, 51, 222, 301, 306, 339
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	2 cut(s)	220, 299
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	4 cut(s)	54, 69, 211, 241
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	4 cut(s)	54, 69, 211, 241
FspBI	CTAG	2 cut(s)	372, 376
GluI	GCNGC	4 cut(s)	54, 69, 211, 241
GsaI	CCCAGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	145
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	224, 303
HinfI	GANTC	1 cut(s)	362
HphI	GGTGA	2 cut(s)	91, 107
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	2 cut(s)	294, 357
Hpy188III	TCNNGA	3 cut(s)	185, 199, 247
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	2 cut(s)	97, 191
HpyCH4V	TGCA	6 cut(s)	56, 121, 178, 194, 213, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 171
HpyF3I	CTNAG	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	224, 303
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	156, 164
LpnPI	CCDG	9 cut(s)	24, 115, 131, 138, 170, 175, 188, 232, 252
Lsp1109I	GCAGC	3 cut(s)	40, 197, 252
MaeI	CTAG	2 cut(s)	372, 376
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	1 cut(s)	104
MfeI	CAATTG	1 cut(s)	254
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	2 cut(s)	10, 254
MnlI	CCTC	2 cut(s)	218, 254
MslI	CAYNNNNRTG	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	77, 171
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	2 cut(s)	224, 303
NlaIV	GGNNCC	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	4 cut(s)	55, 70, 212, 242
Psp124BI	GAGCTC	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	210
RsaI	GTAC	2 cut(s)	88, 329
RsaNI	GTAC	2 cut(s)	87, 328
RseI	CAYNNNNRTG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	161
SatI	GCNGC	4 cut(s)	54, 69, 211, 241
Sau3AI	GATC	1 cut(s)	249
ScaI	AGTACT	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	48
Sse9I	AATT	2 cut(s)	10, 254
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	372, 376
SstI	GAGCTC	1 cut(s)	161
StyI	CCWWGG	2 cut(s)	220, 319
TaaI	ACNGT	2 cut(s)	97, 191
TasI	AATT	2 cut(s)	10, 254
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	362
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	3 cut(s)	53, 210, 240
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	2 cut(s)	372, 376
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.