Rroxscaffold_6G00405270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003126
Physical Location & Seq
Forward (+)
27674124 .. 27675561
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00405270.1

Sequence Viewer

Length: 738 bp
ATGGCCGTCCCCGCAATCACATGGACGGCGATCTTCATCATCGCCGCCACGCTCCGTTTAATCGAATGCGGCGACAACAACCGCGTCTACTCGCCGTGCTCCGACACCAAGGTCGCCAGGTCCGACGGCTTCAGCTTCGGGATCGCCTTCGCCTCCAGGGACGTGTTTCTCCGCAACGGCGCAAACTCCACCTCCCAGTTGTCCCCGTGCGATACTAGACTCTCGCTCTCCACCGCCAATTCTCAGATCGCCGTTTTCCGGCCAAAGGTCGACGAGATCTCTCTCCTCTCCGTCAACTCCTCCTCTTTCGCTCCGGATAATTATGGGGGATATATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGCGGCTTTTGTTGCCAATAGTACCTACACTGTGACCAGCTTTACTCTTGTGCTTGAGTTCACCAAGGGCAGGCTGCAGCACCTGTATTGGAAAAGGGATGGGTGCGCCAAATGTTCTGGGAGCTCCAGCAGCTTCGTTTGCCTCAACAATCAGGACTGTGCAATCAAGACAAATAGCTGCAAAACCCATGGTGGCACTGTGGATTGCAGCCTCGGGATCCAATTGGCATTTTCTGGGACGGATAAGCACCTATCGGTTCTGAACTCATGGTATGAAGTACAGAACCTTGGTCAGTACTCCCTTTATGGTCTCTATTCAAATCTGAAGGATTCTCTCACTAGCCAGTATAACAAGTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

26.69

Weight (kDa)

8.7

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccI GTMKAC 3 cut(s) 87, 270, 371
AccII CGCG 1 cut(s) 84
AccIII TCCGGA 1 cut(s) 313
AciI CCGC 7 cut(s) 12, 45, 69, 82, 172, 234, 377
AclWI GGATC 3 cut(s) 149, 586, 599
AcoI YGGCCR 2 cut(s) 3, 260
AcuI CTGAAG 2 cut(s) 115, 719
AfaI GTAC 3 cut(s) 397, 654, 671
AfiI CCNNNNNNNGG 3 cut(s) 258, 265, 444
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 1 cut(s) 693
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 2 cut(s) 116, 155
AluBI AGCT 5 cut(s) 135, 414, 498, 507, 552
AluI AGCT 5 cut(s) 135, 414, 498, 507, 552
Alw21I GWGCWC 2 cut(s) 101, 500
Alw26I GTCTC 1 cut(s) 689
AlwI GGATC 3 cut(s) 149, 586, 599
AlwNI CAGNNNCTG 1 cut(s) 457
Ama87I CYCGRG 1 cut(s) 587
Aor13HI TCCGGA 1 cut(s) 313
AoxI GGCC 2 cut(s) 3, 260
ApeKI GCWGC 6 cut(s) 362, 448, 451, 504, 552, 582
AspLEI GCGC 2 cut(s) 182, 482
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 1 cut(s) 120
BamHI GGATCC 1 cut(s) 591
BanII GRGCYC 1 cut(s) 500
Bbv12I GWGCWC 2 cut(s) 101, 500
BbvI GCAGC 6 cut(s) 349, 435, 463, 516, 539, 594
BccI CCATC 1 cut(s) 467
BceAI ACGGC 5 cut(s) 42, 79, 142, 193, 236
BciT130I CCWGG 2 cut(s) 118, 157
BcoDI GTCTC 1 cut(s) 689
BfaI CTAG 2 cut(s) 216, 714
BfmI CTRYAG 1 cut(s) 449
BglII AGATCT 1 cut(s) 276
BisI GCNGC 9 cut(s) 45, 70, 363, 378, 449, 452, 505, 553, 583
BlsI GCNGC 9 cut(s) 46, 71, 364, 379, 450, 453, 506, 554, 584
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 2 cut(s) 118, 157
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 587
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 593
BmrFI CCNGG 2 cut(s) 118, 157
BmrI ACTGGG 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 190
BpmI CTGGAG 2 cut(s) 139, 484
BpuEI CTTGAG 1 cut(s) 449
BsaBI GATNNNNATC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 689
BsaJI CCNNGG 6 cut(s) 108, 156, 438, 562, 586, 661
BsaWI WCCGGW 1 cut(s) 313
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 265, 444
Bse1I ACTGG 2 cut(s) 196, 718
Bse8I GATNNNNATC 1 cut(s) 35
BseAI TCCGGA 1 cut(s) 313
BseBI CCWGG 2 cut(s) 118, 157
BseDI CCNNGG 6 cut(s) 108, 156, 438, 562, 586, 661
BseGI GGATG 1 cut(s) 478
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 3 cut(s) 258, 265, 444
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 2 cut(s) 196, 718
BseRI GAGGAG 3 cut(s) 275, 289, 292
BseXI GCAGC 6 cut(s) 349, 435, 463, 516, 539, 594
BseYI CCCAGC 1 cut(s) 347
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 2 cut(s) 5, 262
BsiHKAI GWGCWC 2 cut(s) 101, 500
BsiHKCI CYCGRG 1 cut(s) 587
BsiSI CCGG 2 cut(s) 259, 314
BslFI GGGAC 3 cut(s) 173, 187, 625
BslI CCNNNNNNNGG 3 cut(s) 258, 265, 444
BsmAI GTCTC 1 cut(s) 689
BsmFI GGGAC 3 cut(s) 173, 187, 625
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 2 cut(s) 5, 262
Bso31I GGTCTC 1 cut(s) 689
BsoBI CYCGRG 1 cut(s) 587
Bsp1286I GDGCHC 2 cut(s) 101, 500
Bsp13I TCCGGA 1 cut(s) 313
Bsp143I GATC 5 cut(s) 30, 141, 246, 276, 591
Bsp19I CCATGG 1 cut(s) 562
BspACI CCGC 7 cut(s) 12, 45, 69, 82, 172, 234, 377
BspANI GGCC 2 cut(s) 5, 262
BspCNI CTCAG 1 cut(s) 256
BspEI TCCGGA 1 cut(s) 313
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 593
BspMAI CTGCAG 1 cut(s) 453
BspPI GGATC 3 cut(s) 149, 586, 599
BspTNI GGTCTC 1 cut(s) 689
BsrI ACTGG 2 cut(s) 196, 718
BssECI CCNNGG 6 cut(s) 108, 156, 438, 562, 586, 661
BssMI GATC 5 cut(s) 30, 141, 246, 276, 591
BssT1I CCWWGG 4 cut(s) 108, 438, 562, 661
Bst2UI CCWGG 2 cut(s) 118, 157
Bst4CI ACNGT 3 cut(s) 406, 533, 574
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 1 cut(s) 478
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 2 cut(s) 182, 482
BstKTI GATC 5 cut(s) 33, 144, 249, 279, 594
BstMAI GTCTC 1 cut(s) 689
BstMBI GATC 5 cut(s) 30, 141, 246, 276, 591
BstMWI GCNNNNNNNGC 4 cut(s) 11, 386, 504, 513
BstNI CCWGG 2 cut(s) 118, 157
BstSCI CCNGG 2 cut(s) 116, 155
BstSFI CTRYAG 1 cut(s) 449
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 6 cut(s) 349, 435, 463, 516, 539, 594
BstX2I RGATCY 2 cut(s) 276, 591
BstYI RGATCY 2 cut(s) 276, 591
BsuRI GGCC 2 cut(s) 5, 262
BtgI CCRYGG 1 cut(s) 562
BtgZI GCGATG 1 cut(s) 25
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 2 cut(s) 402, 570
Cac8I GCNNGC 1 cut(s) 446
CaiI CAGNNNCTG 1 cut(s) 457
CfoI GCGC 2 cut(s) 182, 482
Cfr13I GGNCC 1 cut(s) 120
CseI GACGC 1 cut(s) 73
Csp6I GTAC 3 cut(s) 396, 653, 670
CviAII CATG 3 cut(s) 21, 563, 642
CviQI GTAC 3 cut(s) 396, 653, 670
DdeI CTNAG 1 cut(s) 243
DpnI GATC 5 cut(s) 32, 143, 248, 278, 593
DpnII GATC 5 cut(s) 30, 141, 246, 276, 591
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 2 cut(s) 3, 260
Ecl136II GAGCTC 1 cut(s) 498
Eco130I CCWWGG 4 cut(s) 108, 438, 562, 661
Eco24I GRGCYC 1 cut(s) 500
Eco31I GGTCTC 1 cut(s) 689
Eco47I GGWCC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 498
Eco57I CTGAAG 2 cut(s) 115, 719
Eco88I CYCGRG 1 cut(s) 587
EcoICRI GAGCTC 1 cut(s) 498
EcoRII CCWGG 2 cut(s) 116, 155
EcoT14I CCWWGG 4 cut(s) 108, 438, 562, 661
EcoT38I GRGCYC 1 cut(s) 500
ErhI CCWWGG 4 cut(s) 108, 438, 562, 661
FaeI CATG 3 cut(s) 24, 566, 645
FaqI GGGAC 3 cut(s) 173, 187, 625
FatI CATG 3 cut(s) 20, 562, 641
FauI CCCGC 1 cut(s) 19
FblI GTMKAC 3 cut(s) 87, 270, 371
Fnu4HI GCNGC 9 cut(s) 45, 70, 363, 378, 449, 452, 505, 553, 583
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 1 cut(s) 500
Fsp4HI GCNGC 9 cut(s) 45, 70, 363, 378, 449, 452, 505, 553, 583
FspBI CTAG 2 cut(s) 216, 714
GlaI GCGC 2 cut(s) 181, 481
GluI GCNGC 9 cut(s) 45, 70, 363, 378, 449, 452, 505, 553, 583
GsaI CCCAGC 1 cut(s) 351
GsuI CTGGAG 2 cut(s) 139, 484
HaeIII GGCC 2 cut(s) 5, 262
HapII CCGG 2 cut(s) 259, 314
HgaI GACGC 1 cut(s) 73
HhaI GCGC 2 cut(s) 182, 482
Hin1II CATG 3 cut(s) 24, 566, 645
Hin6I GCGC 2 cut(s) 180, 480
HinP1I GCGC 2 cut(s) 180, 480
HincII GTYRAC 2 cut(s) 271, 295
HindII GTYRAC 2 cut(s) 271, 295
HinfI GANTC 2 cut(s) 219, 704
HpaII CCGG 2 cut(s) 259, 314
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 5 cut(s) 88, 271, 295, 372, 435
Hpy188I TCNGA 6 cut(s) 103, 124, 246, 636, 699, 737
Hpy188III TCNNGA 5 cut(s) 139, 314, 527, 541, 589
Hpy8I GTNNAC 5 cut(s) 88, 271, 295, 372, 435
Hpy99I CGWCG 2 cut(s) 128, 275
HpyAV CCTTC 2 cut(s) 157, 694
HpyCH4III ACNGT 3 cut(s) 406, 533, 574
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 5 cut(s) 365, 451, 536, 555, 582
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 386, 504, 513
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 3 cut(s) 24, 566, 645
HspAI GCGC 2 cut(s) 180, 480
Kpn2I TCCGGA 1 cut(s) 313
Kzo9I GATC 5 cut(s) 30, 141, 246, 276, 591
LmnI GCTCC 5 cut(s) 57, 104, 316, 495, 503
Lsp1109I GCAGC 6 cut(s) 349, 435, 463, 516, 539, 594
MaeI CTAG 2 cut(s) 216, 714
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 406
MalI GATC 5 cut(s) 32, 143, 248, 278, 593
MboI GATC 5 cut(s) 30, 141, 246, 276, 591
MboII GAAGA 1 cut(s) 25
MfeI CAATTG 1 cut(s) 596
MflI RGATCY 2 cut(s) 276, 591
MhlI GDGCHC 2 cut(s) 101, 500
MluCI AATT 3 cut(s) 238, 319, 596
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 2 cut(s) 126, 147
MnlI CCTC 7 cut(s) 163, 202, 296, 310, 313, 527, 596
MroI TCCGGA 1 cut(s) 313
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 357
MspI CCGG 2 cut(s) 259, 314
MspR9I CCNGG 2 cut(s) 118, 157
MunI CAATTG 1 cut(s) 596
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 2 cut(s) 118, 157
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 4 cut(s) 11, 386, 504, 513
NcoI CCATGG 1 cut(s) 562
NdeII GATC 5 cut(s) 30, 141, 246, 276, 591
NlaIII CATG 3 cut(s) 24, 566, 645
NlaIV GGNNCC 1 cut(s) 593
NmuCI GTSAC 1 cut(s) 406
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 120
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 704
PkrI GCNGC 9 cut(s) 46, 71, 364, 379, 450, 453, 506, 554, 584
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 500
Psp6I CCWGG 2 cut(s) 116, 155
PspFI CCCAGC 1 cut(s) 347
PspGI CCWGG 2 cut(s) 116, 155
PspN4I GGNNCC 1 cut(s) 593
PspPI GGNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 453
PstNI CAGNNNCTG 1 cut(s) 457
PsuI RGATCY 2 cut(s) 276, 591
RsaI GTAC 3 cut(s) 397, 654, 671
RsaNI GTAC 3 cut(s) 396, 653, 670
RseI CAYNNNNRTG 1 cut(s) 357
SacI GAGCTC 1 cut(s) 500
SalI GTCGAC 1 cut(s) 269
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 9 cut(s) 45, 70, 363, 378, 449, 452, 505, 553, 583
Sau3AI GATC 5 cut(s) 30, 141, 246, 276, 591
Sau96I GGNCC 1 cut(s) 120
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 2 cut(s) 118, 157
SduI GDGCHC 2 cut(s) 101, 500
SfcI CTRYAG 1 cut(s) 449
SinI GGWCC 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 3 cut(s) 238, 319, 596
SsiI CCGC 7 cut(s) 12, 45, 69, 82, 172, 234, 377
SspMI CTAG 2 cut(s) 216, 714
SstI GAGCTC 1 cut(s) 500
StyD4I CCNGG 2 cut(s) 116, 155
StyI CCWWGG 4 cut(s) 108, 438, 562, 661
TaaI ACNGT 3 cut(s) 406, 533, 574
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 63, 270
TasI AATT 3 cut(s) 238, 319, 596
TatI WGTACW 2 cut(s) 652, 669
TauI GCSGC 3 cut(s) 47, 72, 380
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 2 cut(s) 409, 577
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 6 cut(s) 362, 448, 451, 504, 552, 582
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 2 cut(s) 25, 663
TspGWI ACGGA 3 cut(s) 44, 280, 629
TspRI CASTG 2 cut(s) 409, 577
VpaK11BI GGWCC 1 cut(s) 120
XmiI GTMKAC 3 cut(s) 87, 270, 371
XspI CTAG 2 cut(s) 216, 714
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.