Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Reverse (-)

50033531 .. 50037737

Gene Structure 4207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20307

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTTGGATAATTATGGGGGATATATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGCGGCTTTTGTTGCCAATAGTACCTACACTGTCACCAACTTTACTCTTGTGCTTGAGTTCACCGAGGGCAGGCTACAGCACCTGCATTGGAAAAGGGATGGGTGCGTCAAATGTTCTGGGAGCTCTAGGTTCGTTTGCCTGCACAATCGGGACTGTGCAATCAAGACAAACAGCTACAAAACCCATGGAGGCACTGTGGATTGCAGTCTCAGGATCCAATTGGCATTTTCTGGGATGGATAAGCACCTATCCGTTCTGAACTCATGGTTGCTTTTCATATATCCAGTGCAAGGATTAGCTGGAGACAACGAAGAAGGATCGACAGATAAACGATTGGGTTTTTGTATTTCTGGGTCTGGATGCTCTGGATCTGCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.15

Weight (kDa)

8.49

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	156
Acc36I	ACCTGC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	4 cut(s)	274, 287, 391, 442
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	2 cut(s)	135, 356
AluBI	AGCT	3 cut(s)	189, 240, 365
AluI	AGCT	3 cut(s)	189, 240, 365
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	2 cut(s)	278, 363
AlwI	GGATC	4 cut(s)	274, 287, 391, 442
AlwNI	CAGNNNCTG	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	91, 118
BamHI	GGATCC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	158, 295
BcoDI	GTCTC	2 cut(s)	278, 363
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	156
BisI	GCNGC	2 cut(s)	54, 69
BlsI	GCNGC	2 cut(s)	55, 70
BmiI	GGNNCC	1 cut(s)	281
BmsI	GCATC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	129, 250
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 356
Bse1I	ACTGG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	129, 250
BseGI	GGATG	3 cut(s)	169, 306, 431
BseLI	CCNNNNNNNGG	2 cut(s)	135, 356
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	135, 356
BsmAI	GTCTC	2 cut(s)	278, 363
BsmFI	GGGAC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	279, 383, 434
Bsp19I	CCATGG	1 cut(s)	250
BspACI	CCGC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	281
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	4 cut(s)	274, 287, 391, 442
BsrI	ACTGG	1 cut(s)	350
BssECI	CCNNGG	2 cut(s)	129, 250
BssMI	GATC	3 cut(s)	279, 383, 434
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	3 cut(s)	97, 221, 262
BstC8I	GCNNGC	2 cut(s)	137, 206
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	3 cut(s)	169, 306, 431
BstKTI	GATC	3 cut(s)	282, 386, 437
BstMAI	GTCTC	2 cut(s)	278, 363
BstMBI	GATC	3 cut(s)	279, 383, 434
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	279, 434
BstYI	RGATCY	2 cut(s)	279, 434
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	169, 306, 431
BtsIMutI	CAGTG	3 cut(s)	93, 258, 357
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	137, 206
CaiI	CAGNNNCTG	1 cut(s)	148
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	2 cut(s)	251, 330
CviJI	RGCY	5 cut(s)	71, 139, 189, 240, 365
CviKI_1	RGCY	5 cut(s)	71, 139, 189, 240, 365
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	3 cut(s)	281, 385, 436
DpnII	GATC	3 cut(s)	279, 383, 434
Ecl136II	GAGCTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	2 cut(s)	254, 333
FaiI	YATR	9 cut(s)	15, 24, 26, 45, 51, 252, 331, 344, 346
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	2 cut(s)	250, 329
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	54, 69
FokI	GGATG	3 cut(s)	176, 313, 438
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	54, 69
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	2 cut(s)	54, 69
GsaI	CCCAGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	387
HgaI	GACGC	1 cut(s)	160
Hin1II	CATG	2 cut(s)	254, 333
HphI	GGTGA	2 cut(s)	91, 118
Hpy166II	GTNNAC	2 cut(s)	63, 126
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	5 cut(s)	215, 229, 277, 423, 432
Hpy8I	GTNNAC	2 cut(s)	63, 126
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	3 cut(s)	97, 221, 262
HpyCH4V	TGCA	6 cut(s)	56, 151, 208, 224, 270, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	254, 333
Kzo9I	GATC	3 cut(s)	279, 383, 434
LmnI	GCTCC	1 cut(s)	186
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	3 cut(s)	281, 385, 436
MboI	GATC	3 cut(s)	279, 383, 434
MboII	GAAGA	1 cut(s)	389
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	2 cut(s)	279, 434
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	2 cut(s)	10, 284
MnlI	CCTC	2 cut(s)	124, 248
MslI	CAYNNNNRTG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	284
MwoI	GCNNNNNNNGC	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	3 cut(s)	279, 383, 434
NlaIII	CATG	2 cut(s)	254, 333
NlaIV	GGNNCC	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	156
PkrI	GCNGC	2 cut(s)	55, 70
Psp124BI	GAGCTC	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	279, 434
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	191
SatI	GCNGC	2 cut(s)	54, 69
Sau3AI	GATC	3 cut(s)	279, 383, 434
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	8 cut(s)	62, 92, 150, 191, 197, 242, 315, 367
SfaNI	GCATC	1 cut(s)	416
SfcI	CTRYAG	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	10, 284
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	3 cut(s)	97, 221, 262
TaqI	TCGA	1 cut(s)	386
TasI	AATT	2 cut(s)	10, 284
TauI	GCSGC	1 cut(s)	71
TscAI	CASTG	3 cut(s)	100, 265, 357
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	331
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	3 cut(s)	100, 265, 357
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.