Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Forward (+)

30636390 .. 30639917

Gene Structure 3528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG188500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGCGGCTTTTGTTGCCAATAGTACCTACACTGTCACCAGCTTTACTCTTGTGCTTGAGTTCACCGAGGGCAGGCTGCAGCACCTGCATTGGAAAAGGGATGGGTGCGTCAAATGTTCTGGGAGCTCTAGGTTCGTTTGCCTGCACAATCGGGACTGTGCAATCAAGACAAACAGCTACAAAACCCATGGAGGCACTGTGGATTGCAGTCTCAGGATCCAATTGGCATTTTCTGGGATGGATAAGCACCTATCCGTTCTGAACTCATGGTATGAAGCACAGAACCTTGGTCAGTACTCCCTTTATGTTTTACAGGCAAGTGATCAAGTTGATTTGTTCCTCTTACCAGGAGTAGCATTTGACAGACCTGGGAGACGTTTGGCTTGCGTCGACAGAGGCAAATCTTGCTCAAGTGAGGGAGGCAAATCAAGGCAGATCAAGCAGAAAGACAAGAAATGCAACTTGCAGAGCGAGTTGATGGCTGCAAAGTCTACTACAGCACAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.15

Weight (kDa)

9.35

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	132
AccI	GTMKAC	3 cut(s)	38, 429, 530
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	250, 263
AfaI	GTAC	2 cut(s)	64, 335
AfiI	CCNNNNNNNGG	1 cut(s)	111
AjnI	CCWGG	2 cut(s)	385, 406
AluBI	AGCT	3 cut(s)	81, 165, 216
AluI	AGCT	3 cut(s)	81, 165, 216
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	254, 406
AlwI	GGATC	2 cut(s)	250, 263
AlwNI	CAGNNNCTG	1 cut(s)	124
ApeKI	GCWGC	4 cut(s)	29, 115, 118, 521
AsuHPI	GGTGA	2 cut(s)	67, 94
BamHI	GGATCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	4 cut(s)	16, 102, 130, 508
BccI	CCATC	3 cut(s)	134, 271, 511
BciT130I	CCWGG	2 cut(s)	387, 408
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	254, 406
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	2 cut(s)	116, 534
BfuAI	ACCTGC	1 cut(s)	132
BisI	GCNGC	5 cut(s)	30, 45, 116, 119, 522
BlsI	GCNGC	5 cut(s)	31, 46, 117, 120, 523
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	387, 408
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	2 cut(s)	387, 408
BpuEI	CTTGAG	2 cut(s)	116, 433
BsaJI	CCNNGG	4 cut(s)	105, 226, 325, 407
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	387, 408
BseDI	CCNNGG	4 cut(s)	105, 226, 325, 407
BseGI	GGATG	2 cut(s)	145, 282
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	265
BseXI	GCAGC	4 cut(s)	16, 102, 130, 508
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	2 cut(s)	254, 406
BsmBI	CGTCTC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	255, 361, 474
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	257
BspMAI	CTGCAG	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	2 cut(s)	250, 263
BssECI	CCNNGG	4 cut(s)	105, 226, 325, 407
BssMI	GATC	3 cut(s)	255, 361, 474
BssT1I	CCWWGG	2 cut(s)	226, 325
Bst2UI	CCWGG	2 cut(s)	387, 408
Bst4CI	ACNGT	3 cut(s)	73, 197, 238
BstAPI	GCANNNNNTGC	2 cut(s)	124, 444
BstC8I	GCNNGC	3 cut(s)	113, 182, 424
BstDEI	CTNAG	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	145, 282
BstKTI	GATC	3 cut(s)	258, 364, 477
BstMAI	GTCTC	2 cut(s)	254, 406
BstMBI	GATC	3 cut(s)	255, 361, 474
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 124, 444, 478
BstNI	CCWGG	2 cut(s)	387, 408
BstSCI	CCNGG	2 cut(s)	385, 406
BstSFI	CTRYAG	2 cut(s)	116, 534
BstV1I	GCAGC	4 cut(s)	16, 102, 130, 508
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	145, 282
BtsIMutI	CAGTG	2 cut(s)	69, 234
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	113, 182, 424
CaiI	CAGNNNCTG	1 cut(s)	124
CseI	GACGC	2 cut(s)	136, 415
Csp6I	GTAC	2 cut(s)	63, 334
CviAII	CATG	2 cut(s)	227, 306
CviJI	RGCY	7 cut(s)	47, 81, 115, 165, 216, 422, 521
CviKI_1	RGCY	7 cut(s)	47, 81, 115, 165, 216, 422, 521
CviQI	GTAC	2 cut(s)	63, 334
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	3 cut(s)	257, 363, 476
DpnII	GATC	3 cut(s)	255, 361, 474
Ecl136II	GAGCTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	226, 325
Eco24I	GRGCYC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	385, 406
EcoT14I	CCWWGG	2 cut(s)	226, 325
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	2 cut(s)	226, 325
Esp3I	CGTCTC	1 cut(s)	406
FaeI	CATG	2 cut(s)	230, 309
FaiI	YATR	6 cut(s)	21, 27, 228, 307, 312, 345
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	2 cut(s)	226, 305
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	3 cut(s)	38, 429, 530
Fnu4HI	GCNGC	5 cut(s)	30, 45, 116, 119, 522
FokI	GGATG	2 cut(s)	152, 289
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	5 cut(s)	30, 45, 116, 119, 522
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	5 cut(s)	30, 45, 116, 119, 522
GsaI	CCCAGC	1 cut(s)	18
HgaI	GACGC	2 cut(s)	136, 415
Hin1II	CATG	2 cut(s)	230, 309
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HphI	GGTGA	2 cut(s)	67, 94
Hpy166II	GTNNAC	4 cut(s)	39, 102, 430, 531
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	3 cut(s)	191, 205, 253
Hpy8I	GTNNAC	4 cut(s)	39, 102, 430, 531
Hpy99I	CGWCG	1 cut(s)	431
HpyCH4III	ACNGT	3 cut(s)	73, 197, 238
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	9 cut(s)	32, 118, 127, 184, 200, 246, 498, 505, 524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 124, 444, 478
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	2 cut(s)	230, 309
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	255, 361, 474
LmnI	GCTCC	1 cut(s)	162
Lsp1109I	GCAGC	4 cut(s)	16, 102, 130, 508
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	3 cut(s)	257, 363, 476
MboI	GATC	3 cut(s)	255, 361, 474
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	260
MnlI	CCTC	6 cut(s)	100, 224, 389, 428, 448, 452
MslI	CAYNNNNRTG	2 cut(s)	24, 544
MspR9I	CCNGG	2 cut(s)	387, 408
MunI	CAATTG	1 cut(s)	260
MvaI	CCWGG	2 cut(s)	387, 408
MwoI	GCNNNNNNNGC	4 cut(s)	53, 124, 444, 478
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	3 cut(s)	255, 361, 474
NlaIII	CATG	2 cut(s)	230, 309
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	73
PaqCI	CACCTGC	1 cut(s)	132
PkrI	GCNGC	5 cut(s)	31, 46, 117, 120, 523
Psp124BI	GAGCTC	1 cut(s)	167
Psp6I	CCWGG	2 cut(s)	385, 406
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	2 cut(s)	385, 406
PspN4I	GGNNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	2 cut(s)	64, 335
RsaNI	GTAC	2 cut(s)	63, 334
RseI	CAYNNNNRTG	2 cut(s)	24, 544
SacI	GAGCTC	1 cut(s)	167
SalI	GTCGAC	1 cut(s)	428
SatI	GCNGC	5 cut(s)	30, 45, 116, 119, 522
Sau3AI	GATC	3 cut(s)	255, 361, 474
ScaI	AGTACT	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	387, 408
SduI	GDGCHC	1 cut(s)	167
SfcI	CTRYAG	2 cut(s)	116, 534
SmiMI	CAYNNNNRTG	2 cut(s)	24, 544
SmlI	CTYRAG	2 cut(s)	95, 448
SmoI	CTYRAG	2 cut(s)	95, 448
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	385, 406
StyI	CCWWGG	2 cut(s)	226, 325
TaaI	ACNGT	3 cut(s)	73, 197, 238
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	1 cut(s)	429
TasI	AATT	1 cut(s)	260
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	47
TscAI	CASTG	2 cut(s)	76, 241
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	4 cut(s)	29, 115, 118, 521
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	327
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	2 cut(s)	76, 241
XmiI	GTMKAC	3 cut(s)	38, 429, 530
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.