Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Reverse (-)

14214192 .. 14215967

Gene Structure 1776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCTGTCCTCGCAACCACATGGACGGCGGCGATCTTCCTCATCTTCACAACGCTGCGTTTAATCGAATGCGGCGACAACAACCGCGTCTACTCGCCGTGCTCCGACACCAAGGTCGCCAGGTCCGACGGCTTCAGCTTCGGGATCGCCTTCGCGTCCAAGGACGTCTTTCTCCGTAACGGCGCTAACTCCACCTCGCAGTTGTCTCCCTGCGACACCAGGCTCTCTCTCTCCAGCGCCAACTCTCAGATCGCCGTTTTCCGGCCTAAGGTCGACGAGATCTCCCTCCTCTCCGTCAACTCCTCCTCTTTCGCTCCGGATAATTATGGTGGATATATGGTTGCTTTTGCTGGGCATAAGTATGCTGCAAGGTCTACTGCGGCTTTTGTTGCCAATTCGACCTACACTGTCACCAGCTTTACTCTGGTGCTTGAGTTCACCAAGGGCAGGCTGCAGAACCTGTACTGGAAAAGAGATGGGTGCGCCAAATGTTCAGGGAACTCCAGCTTTGTTTGCCTCAACAACCAGGACTGTGCAATCAAGACTAACAGCTGCAAGTCCCACGGAGGCACTGTTGATTGCAGCCTCGGGATCCAATTGGCGTTTTCAGGGACGGATAAGCACCTTTCAGTTCTGAACTCATGGTATGAAGTACAGAACCTTGGTCAGTATTCCCTTTATGGTCTCTATTCAAATTTGAAGGATTCTCTCACTAGCCAGTATAACAAGTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

26.73

Weight (kDa)

8.69

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AatII	GACGTC	1 cut(s)	168
AccI	GTMKAC	3 cut(s)	90, 273, 374
AccII	CGCG	2 cut(s)	87, 155
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	4 cut(s)	29, 72, 85, 380
AclWI	GGATC	3 cut(s)	152, 586, 599
AcsI	RAATTY	1 cut(s)	694
AcuI	CTGAAG	1 cut(s)	118
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	464, 654
AfiI	CCNNNNNNNGG	3 cut(s)	261, 268, 447
AgsI	TTSAA	2 cut(s)	693, 700
AjnI	CCWGG	3 cut(s)	119, 218, 525
AluBI	AGCT	4 cut(s)	138, 417, 507, 552
AluI	AGCT	4 cut(s)	138, 417, 507, 552
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	2 cut(s)	210, 689
AlwI	GGATC	3 cut(s)	152, 586, 599
AlwNI	CAGNNNCTG	1 cut(s)	460
Ama87I	CYCGRG	1 cut(s)	587
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	5 cut(s)	55, 365, 451, 552, 582
ApoI	RAATTY	1 cut(s)	694
AspLEI	GCGC	3 cut(s)	185, 239, 485
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	403, 430
AvaI	CYCGRG	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	123
AxyI	CCTNAGG	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	5 cut(s)	42, 352, 438, 539, 594
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	5 cut(s)	42, 82, 145, 196, 239
BciT130I	CCWGG	3 cut(s)	121, 220, 527
BcoDI	GTCTC	2 cut(s)	210, 689
BfaI	CTAG	1 cut(s)	714
BfmI	CTRYAG	1 cut(s)	452
BfoI	RGCGCY	2 cut(s)	186, 240
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	8 cut(s)	30, 56, 73, 366, 381, 452, 553, 583
BlsI	GCNGC	8 cut(s)	31, 57, 74, 367, 382, 453, 554, 584
Bme1390I	CCNGG	3 cut(s)	121, 220, 527
Bme18I	GGWCC	1 cut(s)	123
BmeT110I	CYCGRG	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	593
BmrFI	CCNGG	3 cut(s)	121, 220, 527
BpmI	CTGGAG	2 cut(s)	217, 487
BpuEI	CTTGAG	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	6 cut(s)	111, 159, 441, 562, 586, 661
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	4 cut(s)	266, 296, 558, 588
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 268, 447
Bse1I	ACTGG	2 cut(s)	470, 718
Bse21I	CCTNAGG	1 cut(s)	267
BseAI	TCCGGA	1 cut(s)	316
BseBI	CCWGG	3 cut(s)	121, 220, 527
BseDI	CCNNGG	6 cut(s)	111, 159, 441, 562, 586, 661
BseLI	CCNNNNNNNGG	3 cut(s)	261, 268, 447
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	2 cut(s)	470, 718
BseRI	GAGGAG	3 cut(s)	278, 292, 295
BseXI	GCAGC	5 cut(s)	42, 352, 438, 539, 594
BseYI	CCCAGC	1 cut(s)	350
Bsh1236I	CGCG	2 cut(s)	87, 155
BshFI	GGCC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	587
BsiSI	CCGG	2 cut(s)	262, 317
BslFI	GGGAC	2 cut(s)	544, 625
BslI	CCNNNNNNNGG	3 cut(s)	261, 268, 447
BsmAI	GTCTC	2 cut(s)	210, 689
BsmFI	GGGAC	2 cut(s)	544, 625
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	689
BsoBI	CYCGRG	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	5 cut(s)	33, 144, 249, 279, 591
BspACI	CCGC	4 cut(s)	29, 72, 85, 380
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	259
BspEI	TCCGGA	1 cut(s)	316
BspFNI	CGCG	2 cut(s)	87, 155
BspLI	GGNNCC	1 cut(s)	593
BspMAI	CTGCAG	1 cut(s)	456
BspPI	GGATC	3 cut(s)	152, 586, 599
BspTNI	GGTCTC	1 cut(s)	689
BsrI	ACTGG	2 cut(s)	470, 718
BssECI	CCNNGG	6 cut(s)	111, 159, 441, 562, 586, 661
BssMI	GATC	5 cut(s)	33, 144, 249, 279, 591
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	4 cut(s)	111, 159, 441, 661
Bst2UI	CCWGG	3 cut(s)	121, 220, 527
Bst4CI	ACNGT	3 cut(s)	409, 533, 574
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	2 cut(s)	246, 267
BstDSI	CCRYGG	1 cut(s)	562
BstFNI	CGCG	2 cut(s)	87, 155
BstH2I	RGCGCY	2 cut(s)	186, 240
BstHHI	GCGC	3 cut(s)	185, 239, 485
BstKTI	GATC	5 cut(s)	36, 147, 252, 282, 594
BstMAI	GTCTC	2 cut(s)	210, 689
BstMBI	GATC	5 cut(s)	33, 144, 249, 279, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 389, 513
BstNI	CCWGG	3 cut(s)	121, 220, 527
BstSCI	CCNGG	3 cut(s)	119, 218, 525
BstSFI	CTRYAG	1 cut(s)	452
BstUI	CGCG	2 cut(s)	87, 155
BstV1I	GCAGC	5 cut(s)	42, 352, 438, 539, 594
BstX2I	RGATCY	2 cut(s)	279, 591
BstYI	RGATCY	2 cut(s)	279, 591
Bsu36I	CCTNAGG	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	265
BtgI	CCRYGG	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	405, 570
Cac8I	GCNNGC	1 cut(s)	449
CaiI	CAGNNNCTG	1 cut(s)	460
CfoI	GCGC	3 cut(s)	185, 239, 485
Cfr13I	GGNCC	1 cut(s)	123
CseI	GACGC	2 cut(s)	76, 144
Csp6I	GTAC	2 cut(s)	463, 653
CviAII	CATG	2 cut(s)	21, 642
CviQI	GTAC	2 cut(s)	463, 653
DdeI	CTNAG	2 cut(s)	246, 267
DpnI	GATC	5 cut(s)	35, 146, 251, 281, 593
DpnII	GATC	5 cut(s)	33, 144, 249, 279, 591
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
Eco130I	CCWWGG	4 cut(s)	111, 159, 441, 661
Eco31I	GGTCTC	1 cut(s)	689
Eco47I	GGWCC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	118
Eco81I	CCTNAGG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	587
EcoRII	CCWGG	3 cut(s)	119, 218, 525
EcoT14I	CCWWGG	4 cut(s)	111, 159, 441, 661
ErhI	CCWWGG	4 cut(s)	111, 159, 441, 661
FaeI	CATG	2 cut(s)	24, 645
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	2 cut(s)	544, 625
FatI	CATG	2 cut(s)	20, 641
FblI	GTMKAC	3 cut(s)	90, 273, 374
Fnu4HI	GCNGC	8 cut(s)	30, 56, 73, 366, 381, 452, 553, 583
Fsp4HI	GCNGC	8 cut(s)	30, 56, 73, 366, 381, 452, 553, 583
FspBI	CTAG	1 cut(s)	714
GlaI	GCGC	3 cut(s)	184, 238, 484
GluI	GCNGC	8 cut(s)	30, 56, 73, 366, 381, 452, 553, 583
GsaI	CCCAGC	1 cut(s)	354
GsuI	CTGGAG	2 cut(s)	217, 487
HaeII	RGCGCY	2 cut(s)	186, 240
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	2 cut(s)	262, 317
HgaI	GACGC	2 cut(s)	76, 144
HhaI	GCGC	3 cut(s)	185, 239, 485
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	24, 645
Hin6I	GCGC	3 cut(s)	183, 237, 483
HinP1I	GCGC	3 cut(s)	183, 237, 483
HincII	GTYRAC	2 cut(s)	274, 298
HindII	GTYRAC	2 cut(s)	274, 298
HinfI	GANTC	1 cut(s)	704
HpaII	CCGG	2 cut(s)	262, 317
HphI	GGTGA	2 cut(s)	403, 430
Hpy166II	GTNNAC	5 cut(s)	91, 274, 298, 375, 438
Hpy188I	TCNGA	5 cut(s)	106, 127, 249, 636, 737
Hpy188III	TCNNGA	4 cut(s)	142, 317, 541, 589
Hpy8I	GTNNAC	5 cut(s)	91, 274, 298, 375, 438
Hpy99I	CGWCG	2 cut(s)	131, 278
HpyAV	CCTTC	2 cut(s)	160, 694
HpyCH4III	ACNGT	3 cut(s)	409, 533, 574
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	5 cut(s)	368, 454, 536, 555, 582
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 389, 513
HpyF3I	CTNAG	2 cut(s)	246, 267
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	24, 645
HspAI	GCGC	3 cut(s)	183, 237, 483
Kpn2I	TCCGGA	1 cut(s)	316
Kzo9I	GATC	5 cut(s)	33, 144, 249, 279, 591
LmnI	GCTCC	2 cut(s)	107, 319
Lsp1109I	GCAGC	5 cut(s)	42, 352, 438, 539, 594
MaeI	CTAG	1 cut(s)	714
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	176, 409
MalI	GATC	5 cut(s)	35, 146, 251, 281, 593
MboI	GATC	5 cut(s)	33, 144, 249, 279, 591
MboII	GAAGA	2 cut(s)	28, 37
MfeI	CAATTG	1 cut(s)	596
MflI	RGATCY	2 cut(s)	279, 591
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	4 cut(s)	322, 394, 596, 694
MmeI	TCCRAC	2 cut(s)	129, 150
MroI	TCCGGA	1 cut(s)	316
MseI	TTAA	1 cut(s)	62
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	552
MspI	CCGG	2 cut(s)	262, 317
MspR9I	CCNGG	3 cut(s)	121, 220, 527
MunI	CAATTG	1 cut(s)	596
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	3 cut(s)	121, 220, 527
MvnI	CGCG	2 cut(s)	87, 155
MwoI	GCNNNNNNNGC	3 cut(s)	11, 389, 513
NdeII	GATC	5 cut(s)	33, 144, 249, 279, 591
NlaIII	CATG	2 cut(s)	24, 645
NlaIV	GGNNCC	1 cut(s)	593
NmuCI	GTSAC	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 123
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	704
PkrI	GCNGC	8 cut(s)	31, 57, 74, 367, 382, 453, 554, 584
Psp6I	CCWGG	3 cut(s)	119, 218, 525
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	3 cut(s)	119, 218, 525
PspN4I	GGNNCC	1 cut(s)	593
PspPI	GGNCC	1 cut(s)	123
PstI	CTGCAG	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	460
PsuI	RGATCY	2 cut(s)	279, 591
PvuII	CAGCTG	1 cut(s)	552
RsaI	GTAC	2 cut(s)	464, 654
RsaNI	GTAC	2 cut(s)	463, 653
RseI	CAYNNNNRTG	1 cut(s)	360
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	8 cut(s)	30, 56, 73, 366, 381, 452, 553, 583
Sau3AI	GATC	5 cut(s)	33, 144, 249, 279, 591
Sau96I	GGNCC	1 cut(s)	123
ScrFI	CCNGG	3 cut(s)	121, 220, 527
SduI	GDGCHC	1 cut(s)	104
SfcI	CTRYAG	1 cut(s)	452
SinI	GGWCC	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	4 cut(s)	322, 394, 596, 694
SsiI	CCGC	4 cut(s)	29, 72, 85, 380
SspMI	CTAG	1 cut(s)	714
StyD4I	CCNGG	3 cut(s)	119, 218, 525
StyI	CCWWGG	4 cut(s)	111, 159, 441, 661
TaaI	ACNGT	3 cut(s)	409, 533, 574
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	3 cut(s)	66, 273, 398
TasI	AATT	4 cut(s)	322, 394, 596, 694
TatI	WGTACW	2 cut(s)	462, 652
TauI	GCSGC	3 cut(s)	32, 75, 383
TfiI	GAWTC	1 cut(s)	704
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	2 cut(s)	412, 577
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	5 cut(s)	55, 365, 451, 552, 582
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	663
TspGWI	ACGGA	4 cut(s)	164, 283, 579, 629
TspRI	CASTG	2 cut(s)	412, 577
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	1 cut(s)	694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
XmiI	GTMKAC	3 cut(s)	90, 273, 374
XspI	CTAG	1 cut(s)	714
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.