Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Reverse (-)

65624189 .. 65628409

Gene Structure 4221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015405

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGAAGGTTTGAAAATCTCGGAAAGGGAACTCAGAAGAGACATCTTAGATTCCATGCTTATCTTACTCTCGCCCTCTCCGTCAACTCCTCTTTCGCTCCGGATAATTATGGGGGATATATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGCGGCTTTTGTTGCCAATAGTACCTACACTGTCACCAGCTTTACTCTTGTGCTTGAGTTCACCAAGGCCAGGCTGCAGCACCTGCATTGGAAAAGGGATGGGTGCGTCAAATGTTCTGGGAGCTCCAGCTTCGTTTTCCTGCACAATCGGGACTGTGCAATCAAGACAAACAGCTGCAAAACCCATGGAGGCACTGTGGATTGCAGCCTCAGGATCCAGTTGGCATTTTCTGGGATGGATAAGCACCTATCCATTCTGAACTCATGGTACGAAGCACAGAACCTTGGTTGCTTTTCATATATCCAGTGCAAGGATTACCTGGAGACAACGAAGAAGGATCAACAGATAAATGATTGGCATTTTGTATTTCTGGGTCTGGATGCTCTGGATCTGCTCAATAGCATCGCTCAATCTCCATATGACCGAGACAATTATCAAAGGATCAAGCACCAAAGAACTAATGACATGTTTAGGAAGAAAAGACTGGATGACGTGTGCCACGGTAAAGTAGTAGTGGATGCGAAGGTGGTCAACAAAGGCGATACTCCAAATTTGATAGCAGGACACAAGTTAGAAGCCGCCAATGAACAACTAGTTTTACAGGCAAGTGATCAAGTTGATTTTTTCCTCTTACCAGGAGTAGCATTTGACAGACCTGGGAGACGTTTGGCTTGTGGCAGAGGCAAATCTTGCTCAAGTGAGGGAGGCAAATCAAGGCAGATCAAGCAAAAAGACAAGAAATGCAACTTGCAGAGCGAGTTGATGGCTGTGAAGTCTACTGCAGCTCAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

35.67

Weight (kDa)

9.34

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AccI	GTMKAC	2 cut(s)	158, 938
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	2 cut(s)	164, 741
AclWI	GGATC	5 cut(s)	370, 383, 507, 558, 611
AcsI	RAATTY	1 cut(s)	712
AfaI	GTAC	2 cut(s)	184, 431
AfiI	CCNNNNNNNGG	2 cut(s)	231, 472
AflIII	ACRYGT	2 cut(s)	627, 654
AgsI	TTSAA	1 cut(s)	14
AhlI	ACTAGT	1 cut(s)	754
AjiI	CACGTC	1 cut(s)	655
AjnI	CCWGG	4 cut(s)	230, 480, 796, 817
AluBI	AGCT	5 cut(s)	201, 285, 291, 336, 947
AluI	AGCT	5 cut(s)	201, 285, 291, 336, 947
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	4 cut(s)	34, 479, 582, 817
AlwI	GGATC	5 cut(s)	370, 383, 507, 558, 611
AlwNI	CAGNNNCTG	1 cut(s)	244
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	6 cut(s)	149, 235, 238, 336, 366, 944
ApoI	RAATTY	1 cut(s)	712
AsuHPI	GGTGA	2 cut(s)	187, 214
AxyI	CCTNAGG	1 cut(s)	371
BamHI	GGATCC	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	5 cut(s)	136, 222, 250, 323, 378
BccI	CCATC	3 cut(s)	254, 391, 919
BciT130I	CCWGG	4 cut(s)	232, 482, 798, 819
BclI	TGATCA	1 cut(s)	772
BcoDI	GTCTC	4 cut(s)	34, 479, 582, 817
BcuI	ACTAGT	1 cut(s)	754
BfaI	CTAG	1 cut(s)	755
BfmI	CTRYAG	2 cut(s)	236, 942
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	8 cut(s)	150, 165, 236, 239, 337, 367, 741, 945
BlpI	GCTNAGC	1 cut(s)	948
BlsI	GCNGC	8 cut(s)	151, 166, 237, 240, 338, 368, 742, 946
Bme1390I	CCNGG	4 cut(s)	232, 482, 798, 819
BmgBI	CACGTC	1 cut(s)	655
BmiI	GGNNCC	1 cut(s)	377
BmrFI	CCNGG	4 cut(s)	232, 482, 798, 819
BmsI	GCATC	3 cut(s)	532, 573, 670
BpmI	CTGGAG	2 cut(s)	271, 503
Bpu1102I	GCTNAGC	1 cut(s)	948
BpuEI	CTTGAG	2 cut(s)	236, 841
BsaJI	CCNNGG	5 cut(s)	225, 346, 445, 661, 818
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 472
Bse1I	ACTGG	3 cut(s)	379, 466, 651
Bse21I	CCTNAGG	1 cut(s)	371
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	4 cut(s)	232, 482, 798, 819
BseDI	CCNNGG	5 cut(s)	225, 346, 445, 661, 818
BseGI	GGATG	5 cut(s)	265, 402, 547, 655, 685
BseLI	CCNNNNNNNGG	2 cut(s)	231, 472
BseMII	CTCAG	2 cut(s)	47, 385
BseNI	ACTGG	3 cut(s)	379, 466, 651
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	5 cut(s)	136, 222, 250, 323, 378
BseYI	CCCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	287
BshFI	GGCC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	231, 472
BsmAI	GTCTC	4 cut(s)	34, 479, 582, 817
BsmBI	CGTCTC	1 cut(s)	817
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	6 cut(s)	375, 499, 550, 603, 772, 882
Bsp1720I	GCTNAGC	1 cut(s)	948
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	2 cut(s)	164, 741
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	2 cut(s)	46, 384
BspEI	TCCGGA	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	377
BspMAI	CTGCAG	2 cut(s)	240, 946
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	5 cut(s)	370, 383, 507, 558, 611
BsrI	ACTGG	3 cut(s)	379, 466, 651
BssECI	CCNNGG	5 cut(s)	225, 346, 445, 661, 818
BssMI	GATC	6 cut(s)	375, 499, 550, 603, 772, 882
BssT1I	CCWWGG	3 cut(s)	225, 346, 445
Bst2UI	CCWGG	4 cut(s)	232, 482, 798, 819
Bst4CI	ACNGT	4 cut(s)	193, 317, 358, 665
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	2 cut(s)	244, 852
BstDEI	CTNAG	4 cut(s)	33, 47, 371, 948
BstDSI	CCRYGG	2 cut(s)	346, 661
BstF5I	GGATG	5 cut(s)	265, 402, 547, 655, 685
BstKTI	GATC	6 cut(s)	378, 502, 553, 606, 775, 885
BstMAI	GTCTC	4 cut(s)	34, 479, 582, 817
BstMBI	GATC	6 cut(s)	375, 499, 550, 603, 772, 882
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 244, 852, 886
BstNI	CCWGG	4 cut(s)	232, 482, 798, 819
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	4 cut(s)	230, 480, 796, 817
BstSFI	CTRYAG	2 cut(s)	236, 942
BstV1I	GCAGC	5 cut(s)	136, 222, 250, 323, 378
BstX2I	RGATCY	2 cut(s)	375, 550
BstYI	RGATCY	2 cut(s)	375, 550
Bsu36I	CCTNAGG	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	230
BtgI	CCRYGG	2 cut(s)	346, 661
BtgZI	GCGATG	1 cut(s)	550
BtrI	CACGTC	1 cut(s)	655
BtsCI	GGATG	5 cut(s)	265, 402, 547, 655, 685
BtsIMutI	CAGTG	3 cut(s)	189, 354, 473
BveI	ACCTGC	1 cut(s)	252
CaiI	CAGNNNCTG	1 cut(s)	244
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	183, 430
CviAII	CATG	4 cut(s)	56, 347, 426, 628
CviQI	GTAC	2 cut(s)	183, 430
DdeI	CTNAG	4 cut(s)	33, 47, 371, 948
DpnI	GATC	6 cut(s)	377, 501, 552, 605, 774, 884
DpnII	GATC	6 cut(s)	375, 499, 550, 603, 772, 882
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	3 cut(s)	225, 346, 445
Eco24I	GRGCYC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	285
Eco81I	CCTNAGG	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	285
EcoRII	CCWGG	4 cut(s)	230, 480, 796, 817
EcoT14I	CCWWGG	3 cut(s)	225, 346, 445
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	3 cut(s)	225, 346, 445
Esp3I	CGTCTC	1 cut(s)	817
FaeI	CATG	4 cut(s)	59, 350, 429, 631
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	4 cut(s)	55, 346, 425, 627
FauNDI	CATATG	1 cut(s)	580
FbaI	TGATCA	1 cut(s)	772
FblI	GTMKAC	2 cut(s)	158, 938
Fnu4HI	GCNGC	8 cut(s)	150, 165, 236, 239, 337, 367, 741, 945
FokI	GGATG	5 cut(s)	272, 409, 554, 662, 692
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	8 cut(s)	150, 165, 236, 239, 337, 367, 741, 945
FspBI	CTAG	1 cut(s)	755
GluI	GCNGC	8 cut(s)	150, 165, 236, 239, 337, 367, 741, 945
GsaI	CCCAGC	1 cut(s)	138
GsuI	CTGGAG	2 cut(s)	271, 503
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	256
Hin1II	CATG	4 cut(s)	59, 350, 429, 631
HincII	GTYRAC	2 cut(s)	85, 694
HindII	GTYRAC	2 cut(s)	85, 694
HinfI	GANTC	1 cut(s)	51
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	2 cut(s)	187, 214
Hpy166II	GTNNAC	5 cut(s)	85, 159, 222, 694, 939
Hpy188I	TCNGA	3 cut(s)	23, 36, 420
Hpy188III	TCNNGA	6 cut(s)	101, 311, 325, 373, 539, 548
Hpy8I	GTNNAC	5 cut(s)	85, 159, 222, 694, 939
HpyAV	CCTTC	2 cut(s)	490, 679
HpyCH4III	ACNGT	4 cut(s)	193, 317, 358, 665
HpyCH4IV	ACGT	2 cut(s)	654, 826
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 244, 852, 886
HpyF3I	CTNAG	4 cut(s)	33, 47, 371, 948
HpySE526I	ACGT	2 cut(s)	654, 826
Hsp92II	CATG	4 cut(s)	59, 350, 429, 631
Kpn2I	TCCGGA	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	6 cut(s)	375, 499, 550, 603, 772, 882
LmnI	GCTCC	3 cut(s)	103, 282, 290
Lsp1109I	GCAGC	5 cut(s)	136, 222, 250, 323, 378
LweI	GCATC	3 cut(s)	532, 573, 670
MaeI	CTAG	1 cut(s)	755
MaeII	ACGT	2 cut(s)	654, 826
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	6 cut(s)	377, 501, 552, 605, 774, 884
MboI	GATC	6 cut(s)	375, 499, 550, 603, 772, 882
MboII	GAAGA	3 cut(s)	49, 505, 649
MflI	RGATCY	2 cut(s)	375, 550
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	3 cut(s)	106, 592, 712
MnlI	CCTC	8 cut(s)	86, 100, 344, 380, 800, 836, 856, 860
MroI	TCCGGA	1 cut(s)	100
MslI	CAYNNNNRTG	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	4 cut(s)	232, 482, 798, 819
MvaI	CCWGG	4 cut(s)	232, 482, 798, 819
MwoI	GCNNNNNNNGC	4 cut(s)	173, 244, 852, 886
NcoI	CCATGG	1 cut(s)	346
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	6 cut(s)	375, 499, 550, 603, 772, 882
NlaIII	CATG	4 cut(s)	59, 350, 429, 631
NlaIV	GGNNCC	1 cut(s)	377
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	631
PaqCI	CACCTGC	1 cut(s)	252
PciI	ACATGT	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	51
PkrI	GCNGC	8 cut(s)	151, 166, 237, 240, 338, 368, 742, 946
PscI	ACATGT	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	287
Psp6I	CCWGG	4 cut(s)	230, 480, 796, 817
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	4 cut(s)	230, 480, 796, 817
PspN4I	GGNNCC	1 cut(s)	377
PsrI	GAACNNNNNNTAC	2 cut(s)	413, 445
PstI	CTGCAG	2 cut(s)	240, 946
PstNI	CAGNNNCTG	1 cut(s)	244
PsuI	RGATCY	2 cut(s)	375, 550
PvuII	CAGCTG	1 cut(s)	336
RsaI	GTAC	2 cut(s)	184, 431
RsaNI	GTAC	2 cut(s)	183, 430
RseI	CAYNNNNRTG	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	287
SatI	GCNGC	8 cut(s)	150, 165, 236, 239, 337, 367, 741, 945
Sau3AI	GATC	6 cut(s)	375, 499, 550, 603, 772, 882
ScrFI	CCNGG	4 cut(s)	232, 482, 798, 819
SduI	GDGCHC	1 cut(s)	287
SfaNI	GCATC	3 cut(s)	532, 573, 670
SfcI	CTRYAG	2 cut(s)	236, 942
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	215, 856
SmoI	CTYRAG	2 cut(s)	215, 856
SpeI	ACTAGT	1 cut(s)	754
Sse9I	AATT	3 cut(s)	106, 592, 712
SsiI	CCGC	2 cut(s)	164, 741
SspMI	CTAG	1 cut(s)	755
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	4 cut(s)	230, 480, 796, 817
StyI	CCWWGG	3 cut(s)	225, 346, 445
TaaI	ACNGT	4 cut(s)	193, 317, 358, 665
TaiI	ACGT	2 cut(s)	657, 829
TaqII	GACCGA	1 cut(s)	600
TasI	AATT	3 cut(s)	106, 592, 712
TauI	GCSGC	2 cut(s)	167, 743
TfiI	GAWTC	1 cut(s)	51
TscAI	CASTG	3 cut(s)	196, 361, 473
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	6 cut(s)	149, 235, 238, 336, 366, 944
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	447, 762
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	3 cut(s)	196, 361, 473
XapI	RAATTY	1 cut(s)	712
XceI	RCATGY	1 cut(s)	631
XmiI	GTMKAC	2 cut(s)	158, 938
XspI	CTAG	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.