Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Forward (+)

59830562 .. 59831067

Gene Structure 506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33316

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGTTGCTTTTGCTGGGCATAAATATGCTACAAGGTCTACTGCGGCTCTTGTTGCCAATAGTACCTACACTGTCACCAGCTTTACTCTTGGCAGGCTGCAGCACCTGCATTGGAAAAGGGATGGGTGCGTCAAATGTTCTGGGAGCTCCAGCTTCGTTTGCCTGCACAATCGGGACTGTGCAATCAAGACAAACAGCTGCAAAACCCATGGAGGCACTGTGGATTGCAGCCTCAGGATCCAATTGGCATTTTCTGGCACGGATAAGCACCTATCCGTTCTGAACTCATGGTATGAAGCACAGAACCTTGGTCAGTACTCCCTTTATGGTCTGTATTCAAATATGAAGGATTCTCTCACTAGCCAGTATAACAAGTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.12

Weight (kDa)

9.24

Isoelectric Point (pI)

27.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	114
Acc36I	ACCTGC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	38
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	232, 245
AfaI	GTAC	2 cut(s)	64, 317
AgsI	TTSAA	1 cut(s)	339
AluBI	AGCT	4 cut(s)	81, 147, 153, 198
AluI	AGCT	4 cut(s)	81, 147, 153, 198
Alw21I	GWGCWC	1 cut(s)	149
AlwI	GGATC	2 cut(s)	232, 245
AlwNI	CAGNNNCTG	1 cut(s)	106
ApeKI	GCWGC	4 cut(s)	97, 100, 198, 228
AsuHPI	GGTGA	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	233
BamHI	GGATCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	4 cut(s)	84, 112, 185, 240
BccI	CCATC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	5 cut(s)	45, 98, 101, 199, 229
BlsI	GCNGC	5 cut(s)	46, 99, 102, 200, 230
BmcAI	AGTACT	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	208, 307
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bse1I	ACTGG	1 cut(s)	364
Bse21I	CCTNAGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	208, 307
BseGI	GGATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	4 cut(s)	84, 112, 185, 240
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	237
Bsp19I	CCATGG	1 cut(s)	208
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	239
BspMAI	CTGCAG	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	2 cut(s)	232, 245
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	208, 307
BssMI	GATC	1 cut(s)	237
BssT1I	CCWWGG	2 cut(s)	208, 307
Bst4CI	ACNGT	3 cut(s)	73, 179, 220
BstAPI	GCANNNNNTGC	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	95, 164
BstDEI	CTNAG	1 cut(s)	233
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 106, 159
BstSFI	CTRYAG	1 cut(s)	98
BstV1I	GCAGC	4 cut(s)	84, 112, 185, 240
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	233
BtgI	CCRYGG	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	69, 216
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	95, 164
CaiI	CAGNNNCTG	1 cut(s)	106
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	63, 316
CviAII	CATG	2 cut(s)	209, 288
CviJI	RGCY	8 cut(s)	47, 81, 97, 147, 153, 198, 231, 363
CviKI_1	RGCY	8 cut(s)	47, 81, 97, 147, 153, 198, 231, 363
CviQI	GTAC	2 cut(s)	63, 316
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	208, 307
Eco24I	GRGCYC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	147
Eco81I	CCTNAGG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	208, 307
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	2 cut(s)	208, 307
FaeI	CATG	2 cut(s)	212, 291
FaiI	YATR	8 cut(s)	21, 27, 210, 289, 294, 327, 344, 369
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	2 cut(s)	208, 287
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	5 cut(s)	45, 98, 101, 199, 229
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	5 cut(s)	45, 98, 101, 199, 229
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	5 cut(s)	45, 98, 101, 199, 229
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	133
HgaI	GACGC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	212, 291
HinfI	GANTC	1 cut(s)	350
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	2 cut(s)	282, 383
Hpy188III	TCNNGA	3 cut(s)	173, 187, 235
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	3 cut(s)	73, 179, 220
HpyCH4V	TGCA	6 cut(s)	100, 109, 166, 182, 201, 228
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 106, 159
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	212, 291
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	2 cut(s)	144, 152
LpnPI	CCDG	9 cut(s)	79, 91, 119, 126, 163, 176, 220, 240, 377
Lsp1109I	GCAGC	4 cut(s)	84, 112, 185, 240
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	1 cut(s)	370
MfeI	CAATTG	1 cut(s)	242
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	1 cut(s)	242
MnlI	CCTC	2 cut(s)	206, 242
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	53, 106, 159
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	2 cut(s)	212, 291
NlaIV	GGNNCC	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	73
PaqCI	CACCTGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	5 cut(s)	46, 99, 102, 200, 230
Psp124BI	GAGCTC	1 cut(s)	149
PspFI	CCCAGC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	239
PsrI	GAACNNNNNNTAC	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	198
RsaI	GTAC	2 cut(s)	64, 317
RsaNI	GTAC	2 cut(s)	63, 316
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	149
SatI	GCNGC	5 cut(s)	45, 98, 101, 199, 229
Sau3AI	GATC	1 cut(s)	237
ScaI	AGTACT	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	9 cut(s)	38, 68, 83, 108, 149, 155, 200, 273, 309
SfcI	CTRYAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	1 cut(s)	242
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	360
SstI	GAGCTC	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	208, 307
TaaI	ACNGT	3 cut(s)	73, 179, 220
TasI	AATT	1 cut(s)	242
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	350
TscAI	CASTG	2 cut(s)	76, 223
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	4 cut(s)	97, 100, 198, 228
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	309, 359
TspGWI	ACGGA	2 cut(s)	265, 275
TspRI	CASTG	2 cut(s)	76, 223
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	1 cut(s)	360
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.