Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Forward (+)

33589495 .. 33590001

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG274500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTTGCTTTTGCTGGGCATAAATATGTTGCAAGGTCTACTGCGGCTCTTGTTGCCAATAGTACCTACACTGTCACCAGCTTTGCTCTTGTGCTTGAGTTCACTAAGGGCAGGCTGCAGCATTTGCATTGGAAAAGGGATGGGTGCGTCAAATGTTCTGGGAGCTCCAGCTTCATTTGCCTGCACAATCGAGACTGTGCAATCAAGACAAACAGCTGCAAAACCCATGGAGGCACTGTGGATTCCAGCCTCAGGATCCAATTGGCATTTTCTGGCACGGATAAGCACCTATCCGTTCTGAACTCATGGTATGAAGCACAGAACCTTGGTCAGTACTCCCTTTATGGTCTGTATTCAAATCTGAAGGATTCTCTCACTAGCCAGTATAACAAGTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.79

Weight (kDa)

9.3

Isoelectric Point (pI)

26.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	38
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	250, 263
AcuI	CTGAAG	1 cut(s)	383
AfaI	GTAC	2 cut(s)	64, 335
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	357
AluBI	AGCT	4 cut(s)	81, 165, 171, 216
AluI	AGCT	4 cut(s)	81, 165, 171, 216
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	2 cut(s)	250, 263
ApeKI	GCWGC	3 cut(s)	115, 118, 216
AsuHPI	GGTGA	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	3 cut(s)	102, 130, 203
BccI	CCATC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	116
BisI	GCNGC	4 cut(s)	45, 116, 119, 217
BlsI	GCNGC	4 cut(s)	46, 117, 120, 218
BmcAI	AGTACT	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	226, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	382
Bse21I	CCTNAGG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	226, 325
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	3 cut(s)	102, 130, 203
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	255
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	257
BspMAI	CTGCAG	1 cut(s)	120
BspPI	GGATC	2 cut(s)	250, 263
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	226, 325
BssMI	GATC	1 cut(s)	255
BssT1I	CCWWGG	2 cut(s)	226, 325
Bst4CI	ACNGT	3 cut(s)	73, 197, 238
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	113, 182
BstDEI	CTNAG	2 cut(s)	105, 251
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	258
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 124, 177
BstSFI	CTRYAG	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	102, 130, 203
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
Bsu36I	CCTNAGG	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	69, 234
Cac8I	GCNNGC	2 cut(s)	113, 182
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	63, 334
CviAII	CATG	2 cut(s)	227, 306
CviJI	RGCY	8 cut(s)	47, 81, 115, 165, 171, 216, 249, 381
CviKI_1	RGCY	8 cut(s)	47, 81, 115, 165, 171, 216, 249, 381
CviQI	GTAC	2 cut(s)	63, 334
DdeI	CTNAG	2 cut(s)	105, 251
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
Ecl136II	GAGCTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	226, 325
Eco24I	GRGCYC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	383
Eco81I	CCTNAGG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	226, 325
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	2 cut(s)	226, 325
FaeI	CATG	2 cut(s)	230, 309
FaiI	YATR	7 cut(s)	21, 27, 228, 307, 312, 345, 387
FatI	CATG	2 cut(s)	226, 305
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	4 cut(s)	45, 116, 119, 217
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	4 cut(s)	45, 116, 119, 217
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	4 cut(s)	45, 116, 119, 217
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	151
HgaI	GACGC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	230, 309
HinfI	GANTC	2 cut(s)	242, 368
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	39, 102
Hpy188I	TCNGA	3 cut(s)	300, 363, 401
Hpy188III	TCNNGA	3 cut(s)	191, 205, 253
Hpy8I	GTNNAC	2 cut(s)	39, 102
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	3 cut(s)	73, 197, 238
HpyCH4V	TGCA	6 cut(s)	32, 118, 127, 184, 200, 219
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 124, 177
HpyF3I	CTNAG	2 cut(s)	105, 251
Hsp92II	CATG	2 cut(s)	230, 309
Kzo9I	GATC	1 cut(s)	255
LmnI	GCTCC	2 cut(s)	162, 170
LpnPI	CCDG	9 cut(s)	91, 97, 144, 181, 194, 238, 258, 259, 395
Lsp1109I	GCAGC	3 cut(s)	102, 130, 203
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	257
MboI	GATC	1 cut(s)	255
MboII	GAAGA	1 cut(s)	388
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	260
MnlI	CCTC	2 cut(s)	224, 260
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	216
MunI	CAATTG	1 cut(s)	260
MwoI	GCNNNNNNNGC	3 cut(s)	53, 124, 177
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	1 cut(s)	255
NlaIII	CATG	2 cut(s)	230, 309
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	242, 368
PkrI	GCNGC	4 cut(s)	46, 117, 120, 218
Psp124BI	GAGCTC	1 cut(s)	167
PspFI	CCCAGC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	257
PsrI	GAACNNNNNNTAC	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	255
PvuII	CAGCTG	1 cut(s)	216
RsaI	GTAC	2 cut(s)	64, 335
RsaNI	GTAC	2 cut(s)	63, 334
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	167
SatI	GCNGC	4 cut(s)	45, 116, 119, 217
Sau3AI	GATC	1 cut(s)	255
ScaI	AGTACT	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	8 cut(s)	38, 68, 83, 167, 173, 218, 291, 327
SfcI	CTRYAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	167
StyI	CCWWGG	2 cut(s)	226, 325
TaaI	ACNGT	3 cut(s)	73, 197, 238
TaqI	TCGA	1 cut(s)	190
TasI	AATT	1 cut(s)	260
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	242, 368
TscAI	CASTG	2 cut(s)	76, 241
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	115, 118, 216
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	163, 327
TspGWI	ACGGA	2 cut(s)	283, 293
TspRI	CASTG	2 cut(s)	76, 241
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	1 cut(s)	378
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.