Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Forward (+)

46033603 .. 46038538

Gene Structure 4936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGTGTTTGTGTAATTTGGAGGGATGAACCTAAGAAGCTCAAATTGCTTGGTCTTGATTTGTCTATTGCTTTCTGTTCTTTGATGCTCGCAAATGGCCTGCTATGGAAGCACCTGCATTGGAAAAGGGATGGGTGCGTCAAATGTTCTGGGAGCTCCAGGTTCGTTTTCCTGCACAATCGGGACTGTGCAATCAAGACAAACAGCTGCAAAACCCATGGAGGCACTGTGGATTGCAGTCTCAGGATCCAATTGGCATTTTCTGGGACGGATAAGCACCTATCCATTCTGAACTCATGGTTGCTTTTCATATATCCAGTGCAAGGATTAGCTGGAGACAACGAAGAAGGATCGACAGATAAACGATTGGGTTTTTGTATTTCTGGGTCTGGTAAGAAGTTGCCAGATGCTCTGGATCTGCTCAATAGCATCGCTCAATCTCCATATGACCAAGACAAGTTCCACCTCATGAATTCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.76

Weight (kDa)

8.64

Isoelectric Point (pI)

28.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	123
Acc36I	ACCTGC	1 cut(s)	123
AclWI	GGATC	4 cut(s)	241, 254, 358, 423
AcsI	RAATTY	1 cut(s)	472
AfiI	CCNNNNNNNGG	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	4 cut(s)	40, 156, 207, 332
AluI	AGCT	4 cut(s)	40, 156, 207, 332
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	2 cut(s)	245, 330
AlwI	GGATC	4 cut(s)	241, 254, 358, 423
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	472
BamHI	GGATCC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	245, 330
BfuAI	ACCTGC	1 cut(s)	123
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	3 cut(s)	75, 397, 438
BpmI	CTGGAG	2 cut(s)	142, 354
BsaJI	CCNNGG	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	2 cut(s)	31, 136
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	158
BslFI	GGGAC	2 cut(s)	197, 280
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	245, 330
BsmFI	GGGAC	2 cut(s)	197, 280
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	3 cut(s)	246, 350, 415
Bsp19I	CCATGG	1 cut(s)	217
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	255
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	248
BspMI	ACCTGC	1 cut(s)	123
BspPI	GGATC	4 cut(s)	241, 254, 358, 423
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	3 cut(s)	246, 350, 415
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	188, 229
BstC8I	GCNNGC	2 cut(s)	90, 101
BstDEI	CTNAG	2 cut(s)	33, 242
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	31, 136
BstKTI	GATC	3 cut(s)	249, 353, 418
BstMAI	GTCTC	2 cut(s)	245, 330
BstMBI	GATC	3 cut(s)	246, 350, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 109
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	2 cut(s)	246, 415
BstYI	RGATCY	2 cut(s)	246, 415
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	31, 136
BtsIMutI	CAGTG	2 cut(s)	225, 324
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	90, 101
CciI	TCATGA	1 cut(s)	468
CseI	GACGC	1 cut(s)	127
CviAII	CATG	3 cut(s)	218, 297, 469
CviJI	RGCY	5 cut(s)	40, 99, 156, 207, 332
CviKI_1	RGCY	5 cut(s)	40, 99, 156, 207, 332
DdeI	CTNAG	2 cut(s)	33, 242
DpnI	GATC	3 cut(s)	248, 352, 417
DpnII	GATC	3 cut(s)	246, 350, 415
Ecl136II	GAGCTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	221, 300, 472
FaiI	YATR	8 cut(s)	106, 219, 298, 311, 313, 445, 447, 470
FaqI	GGGAC	2 cut(s)	197, 280
FatI	CATG	3 cut(s)	217, 296, 468
FauNDI	CATATG	1 cut(s)	445
Fnu4HI	GCNGC	1 cut(s)	208
FokI	GGATG	2 cut(s)	38, 143
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	208
GluI	GCNGC	1 cut(s)	208
GsuI	CTGGAG	2 cut(s)	142, 354
HaeIII	GGCC	1 cut(s)	99
HgaI	GACGC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	221, 300, 472
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	6 cut(s)	56, 182, 196, 244, 413, 469
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	2 cut(s)	188, 229
HpyCH4V	TGCA	6 cut(s)	118, 175, 191, 210, 237, 322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 109
HpyF3I	CTNAG	2 cut(s)	33, 242
Hsp92II	CATG	3 cut(s)	221, 300, 472
Kzo9I	GATC	3 cut(s)	246, 350, 415
LmnI	GCTCC	2 cut(s)	153, 161
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	3 cut(s)	75, 397, 438
MalI	GATC	3 cut(s)	248, 352, 417
MboI	GATC	3 cut(s)	246, 350, 415
MboII	GAAGA	1 cut(s)	356
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	2 cut(s)	246, 415
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	4 cut(s)	15, 44, 251, 472
MnlI	CCTC	3 cut(s)	15, 215, 476
MspA1I	CMGCKG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	160
MunI	CAATTG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	46, 109
NcoI	CCATGG	1 cut(s)	217
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	3 cut(s)	246, 350, 415
NlaIII	CATG	3 cut(s)	221, 300, 472
NlaIV	GGNNCC	1 cut(s)	248
PagI	TCATGA	1 cut(s)	468
PaqCI	CACCTGC	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	246, 415
PvuII	CAGCTG	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	3 cut(s)	246, 350, 415
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	9 cut(s)	34, 42, 117, 158, 164, 209, 282, 334, 468
SfaNI	GCATC	3 cut(s)	75, 397, 438
Sse9I	AATT	4 cut(s)	15, 44, 251, 472
SstI	GAGCTC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	188, 229
TaqI	TCGA	1 cut(s)	353
TasI	AATT	4 cut(s)	15, 44, 251, 472
TscAI	CASTG	2 cut(s)	232, 324
TseI	GCWGC	1 cut(s)	207
TspDTI	ATGAA	3 cut(s)	42, 298, 465
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	2 cut(s)	232, 324
XapI	RAATTY	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.