Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Reverse (-)

248074 .. 251385

Gene Structure 3312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000744.1_g000072.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atggcttccgcatctgcctttgaattagctattgagattttctttgggaaagatgatgttgatttaaatctactcccgtgctccgacaccaaggtcgccaggtccgacggcttcagcttcgggatctccttcgcctcccgttacggcgctaactccacctcccagttgtctccgtacgacactagactctcgccctctccgtcaacccctctttcgctccgattatatgatgtcatagagcacgtgggagtcaagaaccatccagaaacttgtcaagacgaagtcgttccttgtccaagaaggaagcttcagagtcagaaattgaatcctagtcaaaacaggacggatgattatgggggatatatggttgcttttgctgggcataaatatgttgcaaggtctactgcggctcttgttgccaatagtacctacactgtcaccagctttactcttgtgcttgagttcactaagggcaggctgcagcacctgcattggaaaagggatgggtgcgtcaaatgttctgggagctccagcttcgtttgcctgcacaatcgagactgtgcaatcaagacaaacagctgcaaaacccatggaggcattgtggattgcagcctcaggatccaattggcattttctggcacggataagcacctatccgttctgaactcatggtatgaagcacagaaccttggtcagtactccctttatggtctgtattcaaatctgaaggattctctcactagccagtataacaagttcttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

28.15

Weight (kDa)

8.52

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	495
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	495
AccI	GTMKAC	1 cut(s)	401
AciI	CCGC	2 cut(s)	9, 407
AclWI	GGATC	3 cut(s)	131, 613, 626
AcuI	CTGAAG	3 cut(s)	97, 293, 746
AcvI	CACGTG	1 cut(s)	244
AfaI	GTAC	3 cut(s)	176, 427, 698
AgsI	TTSAA	3 cut(s)	23, 325, 720
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	7 cut(s)	29, 117, 307, 444, 528, 534, 579
AluI	AGCT	7 cut(s)	29, 117, 307, 444, 528, 534, 579
Alw21I	GWGCWC	3 cut(s)	83, 243, 530
Alw26I	GTCTC	2 cut(s)	174, 549
AlwI	GGATC	3 cut(s)	131, 613, 626
AlwNI	CAGNNNCTG	1 cut(s)	487
ApeKI	GCWGC	4 cut(s)	478, 481, 579, 609
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	102
AxyI	CCTNAGG	1 cut(s)	614
BamHI	GGATCC	1 cut(s)	618
BanII	GRGCYC	1 cut(s)	530
BbrPI	CACGTG	1 cut(s)	244
Bbv12I	GWGCWC	3 cut(s)	83, 243, 530
BbvI	GCAGC	4 cut(s)	465, 493, 566, 621
BccI	CCATC	2 cut(s)	267, 497
BceAI	ACGGC	2 cut(s)	124, 160
BciT130I	CCWGG	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	174, 549
BfaI	CTAG	3 cut(s)	183, 330, 741
BfmI	CTRYAG	1 cut(s)	479
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	495
BisI	GCNGC	5 cut(s)	408, 479, 482, 580, 610
BlsI	GCNGC	5 cut(s)	409, 480, 483, 581, 611
BmcAI	AGTACT	1 cut(s)	698
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	620
BmrFI	CCNGG	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	20
BmuI	ACTGGG	1 cut(s)	157
BpmI	CTGGAG	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	479
BsaAI	YACGTR	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	3 cut(s)	90, 589, 688
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 585, 615
Bse1I	ACTGG	2 cut(s)	163, 745
Bse21I	CCTNAGG	1 cut(s)	614
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	3 cut(s)	90, 589, 688
BseGI	GGATG	3 cut(s)	259, 352, 508
BseJI	GATNNNNATC	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	628
BseNI	ACTGG	2 cut(s)	163, 745
BseXI	GCAGC	4 cut(s)	465, 493, 566, 621
BseYI	CCCAGC	1 cut(s)	377
BsgI	GTGCAG	1 cut(s)	530
BsiHKAI	GWGCWC	3 cut(s)	83, 243, 530
BsiWI	CGTACG	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	174, 549
Bsp1286I	GDGCHC	3 cut(s)	83, 243, 530
Bsp143I	GATC	2 cut(s)	123, 618
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	2 cut(s)	9, 407
BspCNI	CTCAG	1 cut(s)	627
BspLI	GGNNCC	1 cut(s)	620
BspMAI	CTGCAG	1 cut(s)	483
BspMI	ACCTGC	1 cut(s)	495
BspPI	GGATC	3 cut(s)	131, 613, 626
BsrI	ACTGG	2 cut(s)	163, 745
BssECI	CCNNGG	3 cut(s)	90, 589, 688
BssMI	GATC	2 cut(s)	123, 618
BssT1I	CCWWGG	3 cut(s)	90, 589, 688
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	436, 560
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	476, 545
BstDEI	CTNAG	2 cut(s)	468, 614
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	3 cut(s)	259, 352, 508
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	126, 621
BstMAI	GTCTC	2 cut(s)	174, 549
BstMBI	GATC	2 cut(s)	123, 618
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 487, 540
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	479
BstV1I	GCAGC	4 cut(s)	465, 493, 566, 621
BstX2I	RGATCY	2 cut(s)	123, 618
BstYI	RGATCY	2 cut(s)	123, 618
Bsu36I	CCTNAGG	1 cut(s)	614
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	3 cut(s)	259, 352, 508
BtsIMutI	CAGTG	1 cut(s)	432
BveI	ACCTGC	1 cut(s)	495
Cac8I	GCNNGC	2 cut(s)	476, 545
CaiI	CAGNNNCTG	1 cut(s)	487
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	102
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	3 cut(s)	175, 426, 697
CviAII	CATG	2 cut(s)	590, 669
CviQI	GTAC	3 cut(s)	175, 426, 697
DdeI	CTNAG	2 cut(s)	468, 614
DpnI	GATC	2 cut(s)	125, 620
DpnII	GATC	2 cut(s)	123, 618
DraI	TTTAAA	1 cut(s)	66
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	528
Eco130I	CCWWGG	3 cut(s)	90, 589, 688
Eco24I	GRGCYC	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	528
Eco57I	CTGAAG	3 cut(s)	97, 293, 746
Eco72I	CACGTG	1 cut(s)	244
Eco81I	CCTNAGG	1 cut(s)	614
EcoICRI	GAGCTC	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	3 cut(s)	90, 589, 688
EcoT38I	GRGCYC	1 cut(s)	530
ErhI	CCWWGG	3 cut(s)	90, 589, 688
FaeI	CATG	2 cut(s)	593, 672
FatI	CATG	2 cut(s)	589, 668
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	5 cut(s)	408, 479, 482, 580, 610
FokI	GGATG	3 cut(s)	246, 359, 515
FriOI	GRGCYC	1 cut(s)	530
Fsp4HI	GCNGC	5 cut(s)	408, 479, 482, 580, 610
FspBI	CTAG	3 cut(s)	183, 330, 741
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	5 cut(s)	408, 479, 482, 580, 610
GsaI	CCCAGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	514
HaeII	RGCGCY	1 cut(s)	150
HgaI	GACGC	1 cut(s)	499
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	593, 672
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	5 cut(s)	186, 249, 313, 325, 731
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	3 cut(s)	204, 402, 465
Hpy188I	TCNGA	8 cut(s)	85, 106, 221, 312, 318, 663, 726, 764
Hpy188III	TCNNGA	7 cut(s)	121, 253, 263, 275, 554, 568, 616
Hpy8I	GTNNAC	3 cut(s)	204, 402, 465
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	139, 294, 721
HpyCH4III	ACNGT	2 cut(s)	436, 560
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	7 cut(s)	395, 481, 490, 547, 563, 582, 609
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 487, 540
HpyF3I	CTNAG	2 cut(s)	468, 614
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	593, 672
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	123, 618
LmnI	GCTCC	4 cut(s)	86, 222, 525, 533
Lsp1109I	GCAGC	4 cut(s)	465, 493, 566, 621
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	3 cut(s)	183, 330, 741
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	140, 436
MalI	GATC	2 cut(s)	125, 620
MboI	GATC	2 cut(s)	123, 618
MboII	GAAGA	1 cut(s)	751
MfeI	CAATTG	1 cut(s)	623
MflI	RGATCY	2 cut(s)	123, 618
MhlI	GDGCHC	3 cut(s)	83, 243, 530
MluCI	AATT	3 cut(s)	23, 320, 623
MlyI	GAGTC	3 cut(s)	180, 258, 322
MmeI	TCCRAC	2 cut(s)	108, 129
MnlI	CCTC	6 cut(s)	145, 169, 205, 219, 587, 623
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	579
MspR9I	CCNGG	1 cut(s)	100
MunI	CAATTG	1 cut(s)	623
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	3 cut(s)	416, 487, 540
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	2 cut(s)	123, 618
NlaIII	CATG	2 cut(s)	593, 672
NlaIV	GGNNCC	1 cut(s)	620
NmuCI	GTSAC	1 cut(s)	436
PaqCI	CACCTGC	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 197
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	325, 731
Pfl23II	CGTACG	1 cut(s)	174
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	5 cut(s)	409, 480, 483, 581, 611
PleI	GAGTC	3 cut(s)	180, 257, 321
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
PpsI	GAGTC	3 cut(s)	180, 257, 321
Ppu21I	YACGTR	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	98
PspCI	CACGTG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	98
PspLI	CGTACG	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	620
PspPI	GGNCC	1 cut(s)	102
PsrI	GAACNNNNNNTAC	1 cut(s)	740
PstI	CTGCAG	1 cut(s)	483
PstNI	CAGNNNCTG	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	123, 618
PsyI	GACNNNGTC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	579
RsaI	GTAC	3 cut(s)	176, 427, 698
RsaNI	GTAC	3 cut(s)	175, 426, 697
RseI	CAYNNNNRTG	1 cut(s)	387
SacI	GAGCTC	1 cut(s)	530
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	5 cut(s)	408, 479, 482, 580, 610
Sau3AI	GATC	2 cut(s)	123, 618
Sau96I	GGNCC	1 cut(s)	102
ScaI	AGTACT	1 cut(s)	698
SchI	GAGTC	3 cut(s)	180, 258, 322
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	3 cut(s)	83, 243, 530
SfaNI	GCATC	1 cut(s)	20
SfcI	CTRYAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	102
SmiI	ATTTAAAT	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	3 cut(s)	23, 320, 623
SsiI	CCGC	2 cut(s)	9, 407
SspMI	CTAG	3 cut(s)	183, 330, 741
SstI	GAGCTC	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	3 cut(s)	90, 589, 688
SwaI	ATTTAAAT	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	436, 560
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	553
TasI	AATT	3 cut(s)	23, 320, 623
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	2 cut(s)	325, 731
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	4 cut(s)	478, 481, 579, 609
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	690
TspGWI	ACGGA	5 cut(s)	162, 189, 359, 646, 656
TspRI	CASTG	1 cut(s)	439
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	3 cut(s)	183, 330, 741
ZrmI	AGTACT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.