Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Forward (+)

38699710 .. 38701490

Gene Structure 1781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGACATCACCTGACACCCGCTCGGGTCGGGTCATCAACAACTTCCTCACTAGCTCTGAGTTGTACCAGAAAAGACCCAAACCCATCGATTCTTCCGACGGTAACAACGTCGTCTCCCCCGACACCTCCATGTCCGCCGCCCCCTTCATCGACACCTTCGTTTTCCAAGAACCCCTTAAGCAATTCCTCTGTCTTCTCTCACTCTCCTCCTCCTCTCTTTCTCCGCCGCCGCCTCTCCGTCCATGCCTTCGGGGACTCATCGATAATTATGGGGGATATATGGTTGCTTTTGCTGGGCATAAATATGTTGCAAGGTCTACTGCGGCTCTTGTTGCCAATAGTACCTACACTGTCACCAGCTTTACTCTTGTGCTTGAGTTCACCAAGGGCAGGCTGCAGCACCTGCATTGGAAAAGGGATGGGTGCGTCAAATGTTCTGGGAGCTCCAACTTCGTTTGCCTGCACAATGGAGACTGTGCAATCAAGACAAACAGCTGCAAAACCCATGGAGGCACTGTGGATTGCAGCCTCAGGATTCAATTGGCATTTTTTGGCACGGATAAGCACCTATCCGTTCTGAACTCATGGTATGAAGCACAGAACCTTGGTCAGTACTCCCTTTATGATCTGTATTCAAATTTGAAGGAATCTCTCACTAGCCAGTATAACAAGTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.04

Weight (kDa)

8.75

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	411
Acc36I	ACCTGC	1 cut(s)	411
AccBSI	CCGCTC	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	317
AciI	CCGC	7 cut(s)	19, 135, 138, 224, 227, 230, 323
AcsI	RAATTY	1 cut(s)	637
AfaI	GTAC	3 cut(s)	65, 343, 614
AfiI	CCNNNNNNNGG	1 cut(s)	390
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	539, 636, 643
AluBI	AGCT	4 cut(s)	54, 360, 444, 495
AluI	AGCT	4 cut(s)	54, 360, 444, 495
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	2 cut(s)	118, 465
AlwNI	CAGNNNCTG	1 cut(s)	403
Ama87I	CYCGRG	1 cut(s)	22
ApeKI	GCWGC	4 cut(s)	394, 397, 495, 525
ApoI	RAATTY	1 cut(s)	637
AsuHPI	GGTGA	2 cut(s)	346, 373
AvaI	CYCGRG	1 cut(s)	22
AxyI	CCTNAGG	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	4 cut(s)	381, 409, 482, 537
BccI	CCATC	2 cut(s)	92, 413
BcoDI	GTCTC	2 cut(s)	118, 465
BfaI	CTAG	2 cut(s)	51, 657
BfmI	CTRYAG	1 cut(s)	395
BfrI	CTTAAG	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	411
BisI	GCNGC	8 cut(s)	138, 227, 230, 324, 395, 398, 496, 526
BlsI	GCNGC	8 cut(s)	139, 228, 231, 325, 396, 399, 497, 527
BmcAI	AGTACT	1 cut(s)	614
BmeT110I	CYCGRG	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	395
Bsa29I	ATCGAT	2 cut(s)	87, 261
BsaJI	CCNNGG	3 cut(s)	384, 505, 604
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	1 cut(s)	661
Bse21I	CCTNAGG	1 cut(s)	530
BseCI	ATCGAT	2 cut(s)	87, 261
BseDI	CCNNGG	3 cut(s)	384, 505, 604
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	48, 544
BseNI	ACTGG	1 cut(s)	661
BseRI	GAGGAG	3 cut(s)	196, 199, 202
BseXI	GCAGC	4 cut(s)	381, 409, 482, 537
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	446
BshVI	ATCGAT	2 cut(s)	87, 261
BsiHKAI	GWGCWC	1 cut(s)	446
BsiHKCI	CYCGRG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	2 cut(s)	118, 465
BsmBI	CGTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	267
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp143I	GATC	1 cut(s)	625
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	7 cut(s)	19, 135, 138, 224, 227, 230, 323
BspCNI	CTCAG	2 cut(s)	49, 543
BspDI	ATCGAT	2 cut(s)	87, 261
BspMAI	CTGCAG	1 cut(s)	399
BspMI	ACCTGC	1 cut(s)	411
BspTI	CTTAAG	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	661
BssECI	CCNNGG	3 cut(s)	384, 505, 604
BssMI	GATC	1 cut(s)	625
BssT1I	CCWWGG	3 cut(s)	384, 505, 604
Bst4CI	ACNGT	4 cut(s)	101, 352, 476, 517
BstAFI	CTTAAG	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	392, 461
BstDEI	CTNAG	2 cut(s)	57, 530
BstDSI	CCRYGG	1 cut(s)	505
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	1 cut(s)	628
BstMAI	GTCTC	2 cut(s)	118, 465
BstMBI	GATC	1 cut(s)	625
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 403
BstSFI	CTRYAG	1 cut(s)	395
BstV1I	GCAGC	4 cut(s)	381, 409, 482, 537
BstV2I	GAAGAC	1 cut(s)	185
Bsu15I	ATCGAT	2 cut(s)	87, 261
Bsu36I	CCTNAGG	1 cut(s)	530
BsuTUI	ATCGAT	2 cut(s)	87, 261
BtgI	CCRYGG	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	2 cut(s)	348, 513
BveI	ACCTGC	1 cut(s)	411
Cac8I	GCNNGC	2 cut(s)	392, 461
CaiI	CAGNNNCTG	1 cut(s)	403
ClaI	ATCGAT	2 cut(s)	87, 261
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	3 cut(s)	64, 342, 613
CviAII	CATG	4 cut(s)	130, 243, 506, 585
CviJI	RGCY	8 cut(s)	54, 326, 360, 394, 444, 495, 528, 660
CviKI_1	RGCY	8 cut(s)	54, 326, 360, 394, 444, 495, 528, 660
CviQI	GTAC	3 cut(s)	64, 342, 613
DdeI	CTNAG	2 cut(s)	57, 530
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
EciI	GGCGGA	2 cut(s)	124, 213
Ecl136II	GAGCTC	1 cut(s)	444
Eco130I	CCWWGG	3 cut(s)	384, 505, 604
Eco24I	GRGCYC	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	444
Eco81I	CCTNAGG	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	444
EcoT14I	CCWWGG	3 cut(s)	384, 505, 604
EcoT38I	GRGCYC	1 cut(s)	446
ErhI	CCWWGG	3 cut(s)	384, 505, 604
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	4 cut(s)	133, 246, 509, 588
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	4 cut(s)	129, 242, 505, 584
FauI	CCCGC	1 cut(s)	26
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	8 cut(s)	138, 227, 230, 324, 395, 398, 496, 526
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	446
Fsp4HI	GCNGC	8 cut(s)	138, 227, 230, 324, 395, 398, 496, 526
FspBI	CTAG	2 cut(s)	51, 657
GluI	GCNGC	8 cut(s)	138, 227, 230, 324, 395, 398, 496, 526
GsaI	CCCAGC	1 cut(s)	297
HgaI	GACGC	1 cut(s)	415
Hin1II	CATG	4 cut(s)	133, 246, 509, 588
HinfI	GANTC	4 cut(s)	89, 255, 535, 647
HphI	GGTGA	2 cut(s)	346, 373
Hpy166II	GTNNAC	2 cut(s)	318, 381
Hpy188I	TCNGA	4 cut(s)	58, 97, 579, 680
Hpy188III	TCNNGA	2 cut(s)	484, 532
Hpy8I	GTNNAC	2 cut(s)	318, 381
Hpy99I	CGWCG	2 cut(s)	101, 113
HpyAV	CCTTC	4 cut(s)	154, 166, 257, 637
HpyCH4III	ACNGT	4 cut(s)	101, 352, 476, 517
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	7 cut(s)	311, 397, 406, 463, 479, 498, 525
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 403
HpyF3I	CTNAG	2 cut(s)	57, 530
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	133, 246, 509, 588
Kzo9I	GATC	1 cut(s)	625
LmnI	GCTCC	2 cut(s)	441, 449
Lsp1109I	GCAGC	4 cut(s)	381, 409, 482, 537
MaeI	CTAG	2 cut(s)	51, 657
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	101, 352
MalI	GATC	1 cut(s)	627
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	1 cut(s)	625
MboII	GAAGA	3 cut(s)	84, 185, 667
MfeI	CAATTG	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	4 cut(s)	182, 265, 539, 637
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	2 cut(s)	120, 471
MnlI	CCTC	9 cut(s)	56, 136, 197, 217, 220, 223, 243, 503, 539
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	2 cut(s)	128, 303
MspA1I	CMGCKG	1 cut(s)	495
MspCI	CTTAAG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	539
MwoI	GCNNNNNNNGC	2 cut(s)	332, 403
NcoI	CCATGG	1 cut(s)	505
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	4 cut(s)	133, 246, 509, 588
NmuCI	GTSAC	1 cut(s)	352
PaqCI	CACCTGC	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	4 cut(s)	93, 105, 117, 156
PfeI	GAWTC	3 cut(s)	89, 535, 647
PkrI	GCNGC	8 cut(s)	139, 228, 231, 325, 396, 399, 497, 527
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	446
PspFI	CCCAGC	1 cut(s)	293
PsrI	GAACNNNNNNTAC	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	399
PstNI	CAGNNNCTG	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	495
RsaI	GTAC	3 cut(s)	65, 343, 614
RsaNI	GTAC	3 cut(s)	64, 342, 613
RseI	CAYNNNNRTG	2 cut(s)	128, 303
SacI	GAGCTC	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	8 cut(s)	138, 227, 230, 324, 395, 398, 496, 526
Sau3AI	GATC	1 cut(s)	625
ScaI	AGTACT	1 cut(s)	614
SchI	GAGTC	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	446
SfcI	CTRYAG	1 cut(s)	395
SmiMI	CAYNNNNRTG	2 cut(s)	128, 303
SmlI	CTYRAG	2 cut(s)	176, 374
SmoI	CTYRAG	2 cut(s)	176, 374
Sse9I	AATT	4 cut(s)	182, 265, 539, 637
SsiI	CCGC	7 cut(s)	19, 135, 138, 224, 227, 230, 323
SspMI	CTAG	2 cut(s)	51, 657
SstI	GAGCTC	1 cut(s)	446
StyI	CCWWGG	3 cut(s)	384, 505, 604
TaaI	ACNGT	4 cut(s)	101, 352, 476, 517
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	87, 150, 261
TasI	AATT	4 cut(s)	182, 265, 539, 637
TatI	WGTACW	1 cut(s)	612
TauI	GCSGC	4 cut(s)	140, 229, 232, 326
TfiI	GAWTC	3 cut(s)	89, 535, 647
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	2 cut(s)	355, 520
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	4 cut(s)	394, 397, 495, 525
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	136, 606
TspGWI	ACGGA	3 cut(s)	227, 562, 572
TspRI	CASTG	2 cut(s)	355, 520
Vha464I	CTTAAG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	317
XspI	CTAG	2 cut(s)	51, 657
ZrmI	AGTACT	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.