RchiOBHm_Chr3g0476431

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003126
Physical Location & Seq
Reverse (-)
22402799 .. 22404464
1666 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44185

Sequence Viewer

Length: 735 bp
ATGGCCGTCCCCGCGACCACATGGACGGCGATCTTCATCATCGCCACCACGCTCCGTTTAATCGAATGCGGCGACAACAACCGCGTCTACTCGCCGTGCTCCGACACCAAGGTCGCCAGGTCCGACGGCTTCAGCTTCGGGATCGCCTTCGCCTCCAGGGACGTGTTTCTCCGCAACGGCGCAAACTCCACCTCCCAGTTGTCCCCGTGCGACACTAGACTCTCGCTCTCCACCGCCAATTCTCAGATCGCCGTTTTCCGGCCAAAGGTCGACGAGATCTCTCTCCTCTCCGTCAACTCCTCCTCTTTCGCTCCGGATAATTATGGGGGATATATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGCGGCTTTTGTTGCCAACAGCACCTACACTGTCACCAGCTTTACTCTTGTGCTTGAGTTCACCAAGGGCAGGCTGCAGCACCTGTATTGGAAAAGGGATGGGTGCGCCAAATGTTCTGGGAGCTCCGGCTTCGTTTGCCTCAACAATCAGGACTGTGCAATCAAGACTAACAGCTGCAAAACCCATGGAGGCACTGTGGATTGCAGCCTCGGGATCCAATTGGCATTTTCTGGGACTGATAAGCACCTATCGGTTCTGAACTCATGGTATGAAGTACAGAACCTTGGTCAGTACTCCCTTTATGGTCTCTATTCAAATCTGAAGGATTCTCTCACTAGTCAGTATAACAAGTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

26.59

Weight (kDa)

8.7

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccI GTMKAC 3 cut(s) 87, 270, 371
AccII CGCG 2 cut(s) 14, 84
AccIII TCCGGA 1 cut(s) 313
AciI CCGC 6 cut(s) 12, 69, 82, 172, 234, 377
AclWI GGATC 3 cut(s) 149, 583, 596
AcoI YGGCCR 2 cut(s) 3, 260
AcuI CTGAAG 2 cut(s) 115, 716
AfaI GTAC 2 cut(s) 651, 668
AfiI CCNNNNNNNGG 3 cut(s) 258, 265, 444
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 1 cut(s) 690
AhlI ACTAGT 1 cut(s) 710
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 2 cut(s) 116, 155
AluBI AGCT 4 cut(s) 135, 414, 498, 549
AluI AGCT 4 cut(s) 135, 414, 498, 549
Alw21I GWGCWC 2 cut(s) 101, 500
Alw26I GTCTC 1 cut(s) 686
AlwI GGATC 3 cut(s) 149, 583, 596
AlwNI CAGNNNCTG 1 cut(s) 457
Ama87I CYCGRG 1 cut(s) 584
Aor13HI TCCGGA 1 cut(s) 313
AoxI GGCC 2 cut(s) 3, 260
ApeKI GCWGC 5 cut(s) 362, 448, 451, 549, 579
AspLEI GCGC 2 cut(s) 182, 482
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 400, 427
AvaI CYCGRG 1 cut(s) 584
AvaII GGWCC 1 cut(s) 120
BamHI GGATCC 1 cut(s) 588
BanII GRGCYC 1 cut(s) 500
Bbv12I GWGCWC 2 cut(s) 101, 500
BbvI GCAGC 5 cut(s) 349, 435, 463, 536, 591
BccI CCATC 1 cut(s) 467
BceAI ACGGC 5 cut(s) 42, 79, 142, 193, 236
BciT130I CCWGG 2 cut(s) 118, 157
BcoDI GTCTC 1 cut(s) 686
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 2 cut(s) 216, 711
BfmI CTRYAG 1 cut(s) 449
BglII AGATCT 1 cut(s) 276
BisI GCNGC 7 cut(s) 70, 363, 378, 449, 452, 550, 580
BlsI GCNGC 7 cut(s) 71, 364, 379, 450, 453, 551, 581
BmcAI AGTACT 1 cut(s) 668
Bme1390I CCNGG 2 cut(s) 118, 157
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 584
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 590
BmrFI CCNGG 2 cut(s) 118, 157
BmrI ACTGGG 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 190
BpmI CTGGAG 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 449
BsaBI GATNNNNATC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 686
BsaJI CCNNGG 6 cut(s) 108, 156, 438, 559, 583, 658
BsaWI WCCGGW 1 cut(s) 313
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 555, 585
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 265, 444
Bse1I ACTGG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 35
BseAI TCCGGA 1 cut(s) 313
BseBI CCWGG 2 cut(s) 118, 157
BseDI CCNNGG 6 cut(s) 108, 156, 438, 559, 583, 658
BseGI GGATG 1 cut(s) 478
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 3 cut(s) 258, 265, 444
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 3 cut(s) 275, 289, 292
BseXI GCAGC 5 cut(s) 349, 435, 463, 536, 591
BseYI CCCAGC 1 cut(s) 347
Bsh1236I CGCG 2 cut(s) 14, 84
BshFI GGCC 2 cut(s) 5, 262
BsiHKAI GWGCWC 2 cut(s) 101, 500
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 3 cut(s) 259, 314, 501
BslFI GGGAC 3 cut(s) 173, 187, 622
BslI CCNNNNNNNGG 3 cut(s) 258, 265, 444
BsmAI GTCTC 1 cut(s) 686
BsmFI GGGAC 3 cut(s) 173, 187, 622
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 2 cut(s) 5, 262
Bso31I GGTCTC 1 cut(s) 686
BsoBI CYCGRG 1 cut(s) 584
Bsp1286I GDGCHC 2 cut(s) 101, 500
Bsp13I TCCGGA 1 cut(s) 313
Bsp143I GATC 5 cut(s) 30, 141, 246, 276, 588
Bsp19I CCATGG 1 cut(s) 559
BspACI CCGC 6 cut(s) 12, 69, 82, 172, 234, 377
BspANI GGCC 2 cut(s) 5, 262
BspCNI CTCAG 1 cut(s) 256
BspEI TCCGGA 1 cut(s) 313
BspFNI CGCG 2 cut(s) 14, 84
BspLI GGNNCC 1 cut(s) 590
BspMAI CTGCAG 1 cut(s) 453
BspPI GGATC 3 cut(s) 149, 583, 596
BspTNI GGTCTC 1 cut(s) 686
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 6 cut(s) 108, 156, 438, 559, 583, 658
BssMI GATC 5 cut(s) 30, 141, 246, 276, 588
BssT1I CCWWGG 4 cut(s) 108, 438, 559, 658
Bst2UI CCWGG 2 cut(s) 118, 157
Bst4CI ACNGT 3 cut(s) 406, 530, 571
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 559
BstF5I GGATG 1 cut(s) 478
BstFNI CGCG 2 cut(s) 14, 84
BstHHI GCGC 2 cut(s) 182, 482
BstKTI GATC 5 cut(s) 33, 144, 249, 279, 591
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 5 cut(s) 30, 141, 246, 276, 588
BstMWI GCNNNNNNNGC 3 cut(s) 11, 386, 510
BstNI CCWGG 2 cut(s) 118, 157
BstSCI CCNGG 2 cut(s) 116, 155
BstSFI CTRYAG 1 cut(s) 449
BstUI CGCG 2 cut(s) 14, 84
BstV1I GCAGC 5 cut(s) 349, 435, 463, 536, 591
BstX2I RGATCY 2 cut(s) 276, 588
BstYI RGATCY 2 cut(s) 276, 588
BsuRI GGCC 2 cut(s) 5, 262
BtgI CCRYGG 1 cut(s) 559
BtgZI GCGATG 1 cut(s) 25
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 2 cut(s) 402, 567
Cac8I GCNNGC 1 cut(s) 446
CaiI CAGNNNCTG 1 cut(s) 457
CfoI GCGC 2 cut(s) 182, 482
Cfr13I GGNCC 1 cut(s) 120
CseI GACGC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 650, 667
CviAII CATG 3 cut(s) 21, 560, 639
CviQI GTAC 2 cut(s) 650, 667
DdeI CTNAG 1 cut(s) 243
DpnI GATC 5 cut(s) 32, 143, 248, 278, 590
DpnII GATC 5 cut(s) 30, 141, 246, 276, 588
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 2 cut(s) 3, 260
Ecl136II GAGCTC 1 cut(s) 498
Eco130I CCWWGG 4 cut(s) 108, 438, 559, 658
Eco24I GRGCYC 1 cut(s) 500
Eco31I GGTCTC 1 cut(s) 686
Eco47I GGWCC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 498
Eco57I CTGAAG 2 cut(s) 115, 716
Eco88I CYCGRG 1 cut(s) 584
EcoICRI GAGCTC 1 cut(s) 498
EcoRII CCWGG 2 cut(s) 116, 155
EcoT14I CCWWGG 4 cut(s) 108, 438, 559, 658
EcoT38I GRGCYC 1 cut(s) 500
ErhI CCWWGG 4 cut(s) 108, 438, 559, 658
FaeI CATG 3 cut(s) 24, 563, 642
FaqI GGGAC 3 cut(s) 173, 187, 622
FatI CATG 3 cut(s) 20, 559, 638
FauI CCCGC 1 cut(s) 19
FblI GTMKAC 3 cut(s) 87, 270, 371
Fnu4HI GCNGC 7 cut(s) 70, 363, 378, 449, 452, 550, 580
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 1 cut(s) 500
Fsp4HI GCNGC 7 cut(s) 70, 363, 378, 449, 452, 550, 580
FspBI CTAG 2 cut(s) 216, 711
GlaI GCGC 2 cut(s) 181, 481
GluI GCNGC 7 cut(s) 70, 363, 378, 449, 452, 550, 580
GsaI CCCAGC 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 2 cut(s) 5, 262
HapII CCGG 3 cut(s) 259, 314, 501
HgaI GACGC 1 cut(s) 73
HhaI GCGC 2 cut(s) 182, 482
Hin1II CATG 3 cut(s) 24, 563, 642
Hin6I GCGC 2 cut(s) 180, 480
HinP1I GCGC 2 cut(s) 180, 480
HincII GTYRAC 2 cut(s) 271, 295
HindII GTYRAC 2 cut(s) 271, 295
HinfI GANTC 2 cut(s) 219, 701
HpaII CCGG 3 cut(s) 259, 314, 501
HphI GGTGA 2 cut(s) 400, 427
Hpy166II GTNNAC 5 cut(s) 88, 271, 295, 372, 435
Hpy188I TCNGA 6 cut(s) 103, 124, 246, 633, 696, 734
Hpy188III TCNNGA 5 cut(s) 139, 314, 524, 538, 586
Hpy8I GTNNAC 5 cut(s) 88, 271, 295, 372, 435
Hpy99I CGWCG 2 cut(s) 128, 275
HpyAV CCTTC 2 cut(s) 157, 691
HpyCH4III ACNGT 3 cut(s) 406, 530, 571
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 5 cut(s) 365, 451, 533, 552, 579
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 386, 510
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 3 cut(s) 24, 563, 642
HspAI GCGC 2 cut(s) 180, 480
Kpn2I TCCGGA 1 cut(s) 313
Kzo9I GATC 5 cut(s) 30, 141, 246, 276, 588
LmnI GCTCC 5 cut(s) 57, 104, 316, 495, 503
Lsp1109I GCAGC 5 cut(s) 349, 435, 463, 536, 591
MaeI CTAG 2 cut(s) 216, 711
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 406
MalI GATC 5 cut(s) 32, 143, 248, 278, 590
MboI GATC 5 cut(s) 30, 141, 246, 276, 588
MboII GAAGA 1 cut(s) 25
MfeI CAATTG 1 cut(s) 593
MflI RGATCY 2 cut(s) 276, 588
MhlI GDGCHC 2 cut(s) 101, 500
MluCI AATT 3 cut(s) 238, 319, 593
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 2 cut(s) 126, 147
MnlI CCTC 8 cut(s) 163, 202, 296, 310, 313, 524, 557, 593
MroI TCCGGA 1 cut(s) 313
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 549
MspI CCGG 3 cut(s) 259, 314, 501
MspR9I CCNGG 2 cut(s) 118, 157
MunI CAATTG 1 cut(s) 593
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 2 cut(s) 118, 157
MvnI CGCG 2 cut(s) 14, 84
MwoI GCNNNNNNNGC 3 cut(s) 11, 386, 510
NcoI CCATGG 1 cut(s) 559
NdeII GATC 5 cut(s) 30, 141, 246, 276, 588
NlaIII CATG 3 cut(s) 24, 563, 642
NlaIV GGNNCC 1 cut(s) 590
NmuCI GTSAC 1 cut(s) 406
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 120
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 701
PkrI GCNGC 7 cut(s) 71, 364, 379, 450, 453, 551, 581
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 500
Psp6I CCWGG 2 cut(s) 116, 155
PspFI CCCAGC 1 cut(s) 347
PspGI CCWGG 2 cut(s) 116, 155
PspN4I GGNNCC 1 cut(s) 590
PspPI GGNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 453
PstNI CAGNNNCTG 1 cut(s) 457
PsuI RGATCY 2 cut(s) 276, 588
PvuII CAGCTG 1 cut(s) 549
RsaI GTAC 2 cut(s) 651, 668
RsaNI GTAC 2 cut(s) 650, 667
RseI CAYNNNNRTG 1 cut(s) 357
SacI GAGCTC 1 cut(s) 500
SalI GTCGAC 1 cut(s) 269
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 7 cut(s) 70, 363, 378, 449, 452, 550, 580
Sau3AI GATC 5 cut(s) 30, 141, 246, 276, 588
Sau96I GGNCC 1 cut(s) 120
ScaI AGTACT 1 cut(s) 668
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 2 cut(s) 118, 157
SduI GDGCHC 2 cut(s) 101, 500
SfcI CTRYAG 1 cut(s) 449
SinI GGWCC 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
SpeI ACTAGT 1 cut(s) 710
Sse9I AATT 3 cut(s) 238, 319, 593
SsiI CCGC 6 cut(s) 12, 69, 82, 172, 234, 377
SspMI CTAG 2 cut(s) 216, 711
SstI GAGCTC 1 cut(s) 500
StyD4I CCNGG 2 cut(s) 116, 155
StyI CCWWGG 4 cut(s) 108, 438, 559, 658
TaaI ACNGT 3 cut(s) 406, 530, 571
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 63, 270
TasI AATT 3 cut(s) 238, 319, 593
TatI WGTACW 2 cut(s) 649, 666
TauI GCSGC 2 cut(s) 72, 380
TfiI GAWTC 1 cut(s) 701
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 2 cut(s) 409, 574
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 5 cut(s) 362, 448, 451, 549, 579
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 2 cut(s) 25, 660
TspGWI ACGGA 2 cut(s) 44, 280
TspRI CASTG 2 cut(s) 409, 574
VpaK11BI GGWCC 1 cut(s) 120
XmiI GTMKAC 3 cut(s) 87, 270, 371
XspI CTAG 2 cut(s) 216, 711
ZrmI AGTACT 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.