Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Reverse (-)

27572300 .. 27573340

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGCGGCTTTTGTTGCCAATAGTACCTACACTGTCACCAGCTTTACTCTTGTGCTTGAGTTCACCGAGGGCAGGCTGCAGCACCTGTATCGGAAAAGGGATGGGTGCCTCAAATGTTCTGGGAGCTCCAGGTTCGTTTTCTTGCACAATCGGGACTGTGCAATCAAGACAAACAGCTGCAAAACCCATGGAGGCACTGTGGATTGCAGTCTCAGGATCCAATTGGCATTTTTTGGGACAGATAAGCACCTATCCATTCTGAACTCATGGTTGCTTTTCATATATCCAGTGCAAGGATTAGCTGGAGACAACGAAGAAGGATCGACAGATAAACGATTGGGTTTTTGTATTTCTGGGTCTGGATGCTCTGGATCTGCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.24

Weight (kDa)

8.92

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	144
AccI	GTMKAC	1 cut(s)	38
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	4 cut(s)	250, 263, 367, 418
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	2 cut(s)	111, 332
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	4 cut(s)	81, 165, 216, 341
AluI	AGCT	4 cut(s)	81, 165, 216, 341
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	254, 339
AlwI	GGATC	4 cut(s)	250, 263, 367, 418
AlwNI	CAGNNNCTG	1 cut(s)	124
ApeKI	GCWGC	4 cut(s)	29, 115, 118, 216
AsuHPI	GGTGA	2 cut(s)	67, 94
BamHI	GGATCC	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	4 cut(s)	16, 102, 130, 203
BccI	CCATC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	254, 339
BfmI	CTRYAG	1 cut(s)	116
BisI	GCNGC	5 cut(s)	30, 45, 116, 119, 217
BlsI	GCNGC	5 cut(s)	31, 46, 117, 120, 218
Bme1390I	CCNGG	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	146, 257
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	392
BpmI	CTGGAG	2 cut(s)	151, 363
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	105, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 332
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	105, 226
BseGI	GGATG	2 cut(s)	145, 407
BseLI	CCNNNNNNNGG	2 cut(s)	111, 332
BseMII	CTCAG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	4 cut(s)	16, 102, 130, 203
BseYI	CCCAGC	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	206, 289
BslI	CCNNNNNNNGG	2 cut(s)	111, 332
BsmAI	GTCTC	2 cut(s)	254, 339
BsmFI	GGGAC	2 cut(s)	206, 289
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	255, 359, 410
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	146, 257
BspMAI	CTGCAG	1 cut(s)	120
BspPI	GGATC	4 cut(s)	250, 263, 367, 418
BspT107I	GGYRCC	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	105, 226
BssMI	GATC	3 cut(s)	255, 359, 410
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	3 cut(s)	73, 197, 238
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	145, 407
BstKTI	GATC	3 cut(s)	258, 362, 413
BstMAI	GTCTC	2 cut(s)	254, 339
BstMBI	GATC	3 cut(s)	255, 359, 410
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	116
BstV1I	GCAGC	4 cut(s)	16, 102, 130, 203
BstX2I	RGATCY	2 cut(s)	255, 410
BstYI	RGATCY	2 cut(s)	255, 410
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	145, 407
BtsIMutI	CAGTG	3 cut(s)	69, 234, 333
Cac8I	GCNNGC	1 cut(s)	113
CaiI	CAGNNNCTG	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	2 cut(s)	227, 306
CviJI	RGCY	6 cut(s)	47, 81, 115, 165, 216, 341
CviKI_1	RGCY	6 cut(s)	47, 81, 115, 165, 216, 341
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	3 cut(s)	257, 361, 412
DpnII	GATC	3 cut(s)	255, 359, 410
Ecl136II	GAGCTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	230, 309
FaiI	YATR	6 cut(s)	21, 27, 228, 307, 320, 322
FaqI	GGGAC	2 cut(s)	206, 289
FatI	CATG	2 cut(s)	226, 305
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	5 cut(s)	30, 45, 116, 119, 217
FokI	GGATG	2 cut(s)	152, 414
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	5 cut(s)	30, 45, 116, 119, 217
GluI	GCNGC	5 cut(s)	30, 45, 116, 119, 217
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	2 cut(s)	151, 363
Hin1II	CATG	2 cut(s)	230, 309
HphI	GGTGA	2 cut(s)	67, 94
Hpy166II	GTNNAC	2 cut(s)	39, 102
Hpy188I	TCNGA	2 cut(s)	132, 300
Hpy188III	TCNNGA	5 cut(s)	191, 205, 253, 399, 408
Hpy8I	GTNNAC	2 cut(s)	39, 102
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	3 cut(s)	73, 197, 238
HpyCH4V	TGCA	7 cut(s)	32, 118, 184, 200, 219, 246, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	230, 309
Kzo9I	GATC	3 cut(s)	255, 359, 410
LmnI	GCTCC	2 cut(s)	162, 170
Lsp1109I	GCAGC	4 cut(s)	16, 102, 130, 203
LweI	GCATC	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	3 cut(s)	257, 361, 412
MboI	GATC	3 cut(s)	255, 359, 410
MboII	GAAGA	1 cut(s)	365
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	2 cut(s)	255, 410
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	260
MnlI	CCTC	3 cut(s)	100, 158, 224
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	3 cut(s)	255, 359, 410
NlaIII	CATG	2 cut(s)	230, 309
NlaIV	GGNNCC	2 cut(s)	146, 257
NmuCI	GTSAC	1 cut(s)	73
PkrI	GCNGC	5 cut(s)	31, 46, 117, 120, 218
Psp124BI	GAGCTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	167
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	146, 257
PstI	CTGCAG	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	255, 410
PvuII	CAGCTG	1 cut(s)	216
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	167
SatI	GCNGC	5 cut(s)	30, 45, 116, 119, 217
Sau3AI	GATC	3 cut(s)	255, 359, 410
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	9 cut(s)	38, 68, 83, 126, 167, 173, 218, 291, 343
SfaNI	GCATC	1 cut(s)	392
SfcI	CTRYAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	1 cut(s)	44
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	3 cut(s)	73, 197, 238
TaqI	TCGA	1 cut(s)	362
TasI	AATT	1 cut(s)	260
TauI	GCSGC	1 cut(s)	47
TscAI	CASTG	3 cut(s)	76, 241, 333
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	4 cut(s)	29, 115, 118, 216
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	307
TspRI	CASTG	3 cut(s)	76, 241, 333
XmiI	GTMKAC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.