RchiOBHm_Chr2g0161561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003126
Physical Location & Seq
Reverse (-)
77435221 .. 77439867
4647 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52991

Sequence Viewer

Length: 351 bp
ATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGCGGCTTTTGTTGCCAATAGTACCTACACTGTCACCAGCTTTACTCTTGTGCTTGAGTTCACCGAGGGCAGGCTGCAGCACCTGCATTGGAAAAGGGATGGGTGCGTCAAATGTTCTGGGAGCTCCAGGTTCGTTTTCCTGCACAATCGGGACTGTGCAATCAAGACAAACAGCTGCAAAACCCATGGAGGCACTGTGGATTGCAGTCTCAGGATCCAATTGGCATTTTCTGGGACGGATAAGCACCTATCCATTCTGAACTCATGTGCAAGGATTAGCTGGAGACAACTAAGAAGGATCGACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.04

Weight (kDa)

9.91

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 132
Acc36I ACCTGC 1 cut(s) 132
AccI GTMKAC 1 cut(s) 38
AciI CCGC 1 cut(s) 44
AclWI GGATC 3 cut(s) 250, 263, 347
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 111
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 4 cut(s) 81, 165, 216, 321
AluI AGCT 4 cut(s) 81, 165, 216, 321
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 2 cut(s) 254, 319
AlwI GGATC 3 cut(s) 250, 263, 347
AlwNI CAGNNNCTG 1 cut(s) 124
ApeKI GCWGC 4 cut(s) 29, 115, 118, 216
AsuHPI GGTGA 2 cut(s) 67, 94
BamHI GGATCC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 4 cut(s) 16, 102, 130, 203
BccI CCATC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 254, 319
BfmI CTRYAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 132
BisI GCNGC 5 cut(s) 30, 45, 116, 119, 217
BlsI GCNGC 5 cut(s) 31, 46, 117, 120, 218
Bme1390I CCNGG 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 169
BpmI CTGGAG 2 cut(s) 151, 343
BpuEI CTTGAG 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 105, 226
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 2 cut(s) 105, 226
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 265
BseXI GCAGC 4 cut(s) 16, 102, 130, 203
BseYI CCCAGC 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 167
BslFI GGGAC 2 cut(s) 206, 289
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 254, 319
BsmFI GGGAC 2 cut(s) 206, 289
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 2 cut(s) 255, 339
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 257
BspMAI CTGCAG 1 cut(s) 120
BspMI ACCTGC 1 cut(s) 132
BspPI GGATC 3 cut(s) 250, 263, 347
BssECI CCNNGG 2 cut(s) 105, 226
BssMI GATC 2 cut(s) 255, 339
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 3 cut(s) 73, 197, 238
BstAPI GCANNNNNTGC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 251, 332
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 2 cut(s) 258, 342
BstMAI GTCTC 2 cut(s) 254, 319
BstMBI GATC 2 cut(s) 255, 339
BstMWI GCNNNNNNNGC 2 cut(s) 53, 124
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 116
BstV1I GCAGC 4 cut(s) 16, 102, 130, 203
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 69, 234
BveI ACCTGC 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 113
CaiI CAGNNNCTG 1 cut(s) 124
CseI GACGC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 63
CviAII CATG 2 cut(s) 227, 306
CviJI RGCY 6 cut(s) 47, 81, 115, 165, 216, 321
CviKI_1 RGCY 6 cut(s) 47, 81, 115, 165, 216, 321
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 2 cut(s) 251, 332
DpnI GATC 2 cut(s) 257, 341
DpnII GATC 2 cut(s) 255, 339
Ecl136II GAGCTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 167
Eco53kI GAGCTC 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 2 cut(s) 230, 309
FaiI YATR 4 cut(s) 21, 27, 228, 307
FaqI GGGAC 2 cut(s) 206, 289
FatI CATG 2 cut(s) 226, 305
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 5 cut(s) 30, 45, 116, 119, 217
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 5 cut(s) 30, 45, 116, 119, 217
GluI GCNGC 5 cut(s) 30, 45, 116, 119, 217
GsaI CCCAGC 1 cut(s) 18
GsuI CTGGAG 2 cut(s) 151, 343
HgaI GACGC 1 cut(s) 136
Hin1II CATG 2 cut(s) 230, 309
HphI GGTGA 2 cut(s) 67, 94
Hpy166II GTNNAC 2 cut(s) 39, 102
Hpy188I TCNGA 1 cut(s) 300
Hpy188III TCNNGA 3 cut(s) 191, 205, 253
Hpy8I GTNNAC 2 cut(s) 39, 102
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 3 cut(s) 73, 197, 238
HpyCH4V TGCA 8 cut(s) 32, 118, 127, 184, 200, 219, 246, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 124
HpyF3I CTNAG 2 cut(s) 251, 332
Hsp92II CATG 2 cut(s) 230, 309
Kzo9I GATC 2 cut(s) 255, 339
LmnI GCTCC 2 cut(s) 162, 170
Lsp1109I GCAGC 4 cut(s) 16, 102, 130, 203
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 257, 341
MboI GATC 2 cut(s) 255, 339
MfeI CAATTG 1 cut(s) 260
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 1 cut(s) 260
MnlI CCTC 2 cut(s) 100, 224
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 169
MunI CAATTG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 2 cut(s) 53, 124
NcoI CCATGG 1 cut(s) 226
NdeII GATC 2 cut(s) 255, 339
NlaIII CATG 2 cut(s) 230, 309
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 73
PaqCI CACCTGC 1 cut(s) 132
PkrI GCNGC 5 cut(s) 31, 46, 117, 120, 218
Psp124BI GAGCTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 167
PspFI CCCAGC 1 cut(s) 14
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 257
PstI CTGCAG 1 cut(s) 120
PstNI CAGNNNCTG 1 cut(s) 124
PsuI RGATCY 1 cut(s) 255
PvuII CAGCTG 1 cut(s) 216
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 24
SacI GAGCTC 1 cut(s) 167
SatI GCNGC 5 cut(s) 30, 45, 116, 119, 217
Sau3AI GATC 2 cut(s) 255, 339
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 1 cut(s) 167
SetI ASST 9 cut(s) 38, 68, 83, 126, 167, 173, 218, 291, 323
SfcI CTRYAG 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 260
SsiI CCGC 1 cut(s) 44
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 3 cut(s) 73, 197, 238
TaqI TCGA 1 cut(s) 342
TasI AATT 1 cut(s) 260
TauI GCSGC 1 cut(s) 47
TscAI CASTG 2 cut(s) 76, 241
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 4 cut(s) 29, 115, 118, 216
Tsp45I GTSAC 1 cut(s) 73
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 2 cut(s) 76, 241
XmiI GTMKAC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.