Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004556.1

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Forward (+)

36094 .. 37102

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004556.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggccgtcgccgcaaccacatggacggcgatcttcatcatcgccgccacgctccgtttaatcgaatgcggcgacaacaaccgcgtctactcgccgtgctccgacaccaaggtcgccaggtccgacggcttcagcttcgggatcgccttcgcctccagggacgtgtttctccgcaacggcgcaaactccacctcccagttgtccccgtgcgacactagactctcgctctccaccgccaattctcagatcgccgttttccggccaaaggtcgacgagatctctctcctctccgtcaactcctcctctttcgctccggataattatgggggatatatggttgcttttgctgggcataaatatgctgcaaggtctactgcggcttttgttgccaacagtacctacactgtcaccagctttactcttgtgcttgagttcaccaagggcaggctgcagcacctgtattggaaaagggatgggtgcgccaaatgttctgggagctcccagagctccggcttcgtttgcctcaacaatcaggactgtgcaatcaaaactaacagctgcaaaacccatggaggcactgtggattgcagcctcgggattttttcactacccactcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

22.07

Weight (kDa)

8.76

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AccI	GTMKAC	3 cut(s)	87, 270, 371
AccII	CGCG	1 cut(s)	84
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	7 cut(s)	12, 45, 69, 82, 172, 234, 377
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	2 cut(s)	3, 260
AcuI	CTGAAG	1 cut(s)	115
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	3 cut(s)	258, 265, 444
AflIII	ACRYGT	1 cut(s)	162
AjiI	CACGTC	1 cut(s)	163
AjnI	CCWGG	2 cut(s)	116, 155
AluBI	AGCT	5 cut(s)	135, 414, 498, 507, 558
AluI	AGCT	5 cut(s)	135, 414, 498, 507, 558
Alw21I	GWGCWC	3 cut(s)	101, 500, 509
AlwI	GGATC	1 cut(s)	149
AlwNI	CAGNNNCTG	1 cut(s)	457
Ama87I	CYCGRG	1 cut(s)	593
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	2 cut(s)	3, 260
ApeKI	GCWGC	5 cut(s)	362, 448, 451, 558, 588
AspLEI	GCGC	2 cut(s)	182, 482
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	400, 427
AvaI	CYCGRG	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	120
BanII	GRGCYC	2 cut(s)	500, 509
Bbv12I	GWGCWC	3 cut(s)	101, 500, 509
BbvI	GCAGC	5 cut(s)	349, 435, 463, 545, 600
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	5 cut(s)	42, 79, 142, 193, 236
BciT130I	CCWGG	2 cut(s)	118, 157
BfaI	CTAG	2 cut(s)	216, 619
BfmI	CTRYAG	1 cut(s)	449
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	9 cut(s)	12, 45, 70, 363, 378, 449, 452, 559, 589
BlsI	GCNGC	9 cut(s)	13, 46, 71, 364, 379, 450, 453, 560, 590
Bme1390I	CCNGG	2 cut(s)	118, 157
Bme18I	GGWCC	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	593
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	118, 157
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BpmI	CTGGAG	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	5 cut(s)	108, 156, 438, 568, 592
BsaWI	WCCGGW	1 cut(s)	313
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 564, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 265, 444
Bse1I	ACTGG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	2 cut(s)	118, 157
BseDI	CCNNGG	5 cut(s)	108, 156, 438, 568, 592
BseGI	GGATG	1 cut(s)	478
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	3 cut(s)	258, 265, 444
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	3 cut(s)	275, 289, 292
BseXI	GCAGC	5 cut(s)	349, 435, 463, 545, 600
BseYI	CCCAGC	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	5, 262
BsiHKAI	GWGCWC	3 cut(s)	101, 500, 509
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	3 cut(s)	259, 314, 510
BslFI	GGGAC	2 cut(s)	173, 187
BslI	CCNNNNNNNGG	3 cut(s)	258, 265, 444
BsmFI	GGGAC	2 cut(s)	173, 187
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	5, 262
BsoBI	CYCGRG	1 cut(s)	593
Bsp1286I	GDGCHC	3 cut(s)	101, 500, 509
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	30, 141, 246, 276
Bsp19I	CCATGG	1 cut(s)	568
BspACI	CCGC	7 cut(s)	12, 45, 69, 82, 172, 234, 377
BspANI	GGCC	2 cut(s)	5, 262
BspCNI	CTCAG	1 cut(s)	256
BspEI	TCCGGA	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	453
BspPI	GGATC	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	5 cut(s)	108, 156, 438, 568, 592
BssMI	GATC	4 cut(s)	30, 141, 246, 276
BssT1I	CCWWGG	3 cut(s)	108, 438, 568
Bst2UI	CCWGG	2 cut(s)	118, 157
Bst4CI	ACNGT	4 cut(s)	395, 406, 539, 580
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	182, 482
BstKTI	GATC	4 cut(s)	33, 144, 249, 279
BstMBI	GATC	4 cut(s)	30, 141, 246, 276
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 386, 504, 519
BstNI	CCWGG	2 cut(s)	118, 157
BstSCI	CCNGG	2 cut(s)	116, 155
BstSFI	CTRYAG	1 cut(s)	449
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	5 cut(s)	349, 435, 463, 545, 600
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	5, 262
BtgI	CCRYGG	1 cut(s)	568
BtgZI	GCGATG	1 cut(s)	25
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	402, 576
Cac8I	GCNNGC	1 cut(s)	446
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	2 cut(s)	182, 482
Cfr13I	GGNCC	1 cut(s)	120
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	2 cut(s)	21, 569
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	4 cut(s)	32, 143, 248, 278
DpnII	GATC	4 cut(s)	30, 141, 246, 276
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	2 cut(s)	3, 260
Ecl136II	GAGCTC	2 cut(s)	498, 507
Eco130I	CCWWGG	3 cut(s)	108, 438, 568
Eco24I	GRGCYC	2 cut(s)	500, 509
Eco47I	GGWCC	1 cut(s)	120
Eco53kI	GAGCTC	2 cut(s)	498, 507
Eco57I	CTGAAG	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	593
EcoICRI	GAGCTC	2 cut(s)	498, 507
EcoRII	CCWGG	2 cut(s)	116, 155
EcoT14I	CCWWGG	3 cut(s)	108, 438, 568
EcoT38I	GRGCYC	2 cut(s)	500, 509
ErhI	CCWWGG	3 cut(s)	108, 438, 568
FaeI	CATG	2 cut(s)	24, 572
FaiI	YATR	7 cut(s)	22, 324, 333, 335, 354, 360, 570
FaqI	GGGAC	2 cut(s)	173, 187
FatI	CATG	2 cut(s)	20, 568
FblI	GTMKAC	3 cut(s)	87, 270, 371
Fnu4HI	GCNGC	9 cut(s)	12, 45, 70, 363, 378, 449, 452, 559, 589
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	2 cut(s)	500, 509
Fsp4HI	GCNGC	9 cut(s)	12, 45, 70, 363, 378, 449, 452, 559, 589
FspBI	CTAG	2 cut(s)	216, 619
GlaI	GCGC	2 cut(s)	181, 481
GluI	GCNGC	9 cut(s)	12, 45, 70, 363, 378, 449, 452, 559, 589
GsaI	CCCAGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	5, 262
HapII	CCGG	3 cut(s)	259, 314, 510
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	182, 482
Hin1II	CATG	2 cut(s)	24, 572
Hin6I	GCGC	2 cut(s)	180, 480
HinP1I	GCGC	2 cut(s)	180, 480
HincII	GTYRAC	2 cut(s)	271, 295
HindII	GTYRAC	2 cut(s)	271, 295
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	3 cut(s)	259, 314, 510
HphI	GGTGA	2 cut(s)	400, 427
Hpy166II	GTNNAC	5 cut(s)	88, 271, 295, 372, 435
Hpy188I	TCNGA	3 cut(s)	103, 124, 246
Hpy188III	TCNNGA	4 cut(s)	139, 314, 533, 595
Hpy8I	GTNNAC	5 cut(s)	88, 271, 295, 372, 435
Hpy99I	CGWCG	3 cut(s)	11, 128, 275
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	4 cut(s)	395, 406, 539, 580
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	5 cut(s)	365, 451, 542, 561, 588
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 386, 504, 519
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	24, 572
HspAI	GCGC	2 cut(s)	180, 480
Kpn2I	TCCGGA	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	30, 141, 246, 276
LmnI	GCTCC	6 cut(s)	57, 104, 316, 495, 503, 512
Lsp1109I	GCAGC	5 cut(s)	349, 435, 463, 545, 600
MaeI	CTAG	2 cut(s)	216, 619
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	4 cut(s)	32, 143, 248, 278
MboI	GATC	4 cut(s)	30, 141, 246, 276
MboII	GAAGA	1 cut(s)	25
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	3 cut(s)	101, 500, 509
MluCI	AATT	2 cut(s)	238, 319
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	2 cut(s)	126, 147
MnlI	CCTC	8 cut(s)	163, 202, 296, 310, 313, 533, 566, 602
MroI	TCCGGA	1 cut(s)	313
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	558
MspI	CCGG	3 cut(s)	259, 314, 510
MspR9I	CCNGG	2 cut(s)	118, 157
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	2 cut(s)	118, 157
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	4 cut(s)	11, 386, 504, 519
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	4 cut(s)	30, 141, 246, 276
NlaIII	CATG	2 cut(s)	24, 572
NmuCI	GTSAC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 120
PctI	GAATGC	1 cut(s)	71
PkrI	GCNGC	9 cut(s)	13, 46, 71, 364, 379, 450, 453, 560, 590
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
Psp124BI	GAGCTC	2 cut(s)	500, 509
Psp6I	CCWGG	2 cut(s)	116, 155
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	2 cut(s)	116, 155
PspPI	GGNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	453
PstNI	CAGNNNCTG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	276
PvuII	CAGCTG	1 cut(s)	558
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	357
SacI	GAGCTC	2 cut(s)	500, 509
SalI	GTCGAC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	9 cut(s)	12, 45, 70, 363, 378, 449, 452, 559, 589
Sau3AI	GATC	4 cut(s)	30, 141, 246, 276
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	118, 157
SduI	GDGCHC	3 cut(s)	101, 500, 509
SfcI	CTRYAG	1 cut(s)	449
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	2 cut(s)	238, 319
SsiI	CCGC	7 cut(s)	12, 45, 69, 82, 172, 234, 377
SspMI	CTAG	2 cut(s)	216, 619
SstI	GAGCTC	2 cut(s)	500, 509
StyD4I	CCNGG	2 cut(s)	116, 155
StyI	CCWWGG	3 cut(s)	108, 438, 568
TaaI	ACNGT	4 cut(s)	395, 406, 539, 580
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	63, 270
TasI	AATT	2 cut(s)	238, 319
TauI	GCSGC	4 cut(s)	14, 47, 72, 380
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	2 cut(s)	409, 583
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	5 cut(s)	362, 448, 451, 558, 588
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	2 cut(s)	44, 280
TspRI	CASTG	2 cut(s)	409, 583
VpaK11BI	GGWCC	1 cut(s)	120
XmiI	GTMKAC	3 cut(s)	87, 270, 371
XspI	CTAG	2 cut(s)	216, 619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.