RchiOBHm_Chr1g0326381

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003126
Physical Location & Seq
Forward (+)
14855874 .. 14856998
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55601

Sequence Viewer

Length: 639 bp
ATGAAAGATGGATATTGTGATACCCATCTTATTTTCTTTCGGAAAGATGATGTTGATTTAAATCTACTCCCGTGCTCCGACACCAAGGTCGCCAGGTCCGACGGCTTCAGCTTCGGGATCGCCTTCGCCTCCCGTTACGGCGCTAACTCCACCTCCCAGTTGTCTCCGTGCGACACTAGACTCTCGCCCTCTCCGTCAACTCCTCTTTTGCTCCGGATAATTATGGGGGATATATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTAGCTGCGGCTTTTGTTGCCAATAGTACCTACACTGTCACCAGCTTTACTCTTGTGCTTGAGTTCACCGAGGGCAGGCTACAGCACCTGCATTGGAAAAGGGATGGGTGCGTCAAATGTTCTGGGAGCTCTAGGTTCGTTTGCCTGCACAATCGGGACTGTGCAATCAAGACAAACAGCTACAAAACCCATGGAGGCACTGTGGATTGCAGTCTCAGGATCCAATTGGCATTTTCTGGGATGGATAAGCACCTATCCGTTCTGAACTCATGGTATGAAGCACAGAACCTTGGTCAGTACTCCCTTTATGGTCTGTATTCAAATCTAAAGGATTCTCTCACTAGCCAGTATAACAAGTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.68

Weight (kDa)

8.4

Isoelectric Point (pI)

27.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 369
AasI GACNNNNNNGTC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 369
AccI GTMKAC 1 cut(s) 271
AccIII TCCGGA 1 cut(s) 213
AciI CCGC 1 cut(s) 281
AclWI GGATC 3 cut(s) 125, 487, 500
AcuI CTGAAG 1 cut(s) 91
AfaI GTAC 2 cut(s) 301, 572
AfiI CCNNNNNNNGG 1 cut(s) 348
AgsI TTSAA 1 cut(s) 594
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 5 cut(s) 111, 278, 318, 402, 453
AluI AGCT 5 cut(s) 111, 278, 318, 402, 453
Alw21I GWGCWC 2 cut(s) 77, 404
Alw26I GTCTC 2 cut(s) 168, 491
AlwI GGATC 3 cut(s) 125, 487, 500
AlwNI CAGNNNCTG 1 cut(s) 361
Aor13HI TCCGGA 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 262, 278
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 2 cut(s) 304, 331
AvaII GGWCC 1 cut(s) 96
BamHI GGATCC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 404
Bbv12I GWGCWC 2 cut(s) 77, 404
BbvI GCAGC 2 cut(s) 249, 265
BccI CCATC 4 cut(s) 2, 33, 371, 508
BceAI ACGGC 2 cut(s) 118, 154
BciT130I CCWGG 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 168, 491
BfaI CTAG 4 cut(s) 177, 275, 405, 615
BfmI CTRYAG 1 cut(s) 353
BfoI RGCGCY 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 369
BisI GCNGC 3 cut(s) 263, 279, 282
BlsI GCNGC 3 cut(s) 264, 280, 283
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 494
BmrFI CCNGG 1 cut(s) 94
BmrI ACTGGG 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 353
BsaBI GATNNNNATC 2 cut(s) 24, 60
BsaJI CCNNGG 4 cut(s) 84, 342, 463, 562
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 459, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 2 cut(s) 157, 619
Bse8I GATNNNNATC 2 cut(s) 24, 60
BseAI TCCGGA 1 cut(s) 213
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 4 cut(s) 84, 342, 463, 562
BseGI GGATG 2 cut(s) 382, 519
BseJI GATNNNNATC 2 cut(s) 24, 60
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMII CTCAG 1 cut(s) 502
BseNI ACTGG 2 cut(s) 157, 619
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 249, 265
BseYI CCCAGC 1 cut(s) 247
BsgI GTGCAG 1 cut(s) 404
BsiHKAI GWGCWC 2 cut(s) 77, 404
BsiSI CCGG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 2 cut(s) 168, 491
BsmFI GGGAC 1 cut(s) 443
Bsp1286I GDGCHC 2 cut(s) 77, 404
Bsp13I TCCGGA 1 cut(s) 213
Bsp143I GATC 2 cut(s) 117, 492
Bsp19I CCATGG 1 cut(s) 463
BspACI CCGC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 501
BspEI TCCGGA 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 494
BspMI ACCTGC 1 cut(s) 369
BspPI GGATC 3 cut(s) 125, 487, 500
BsrI ACTGG 2 cut(s) 157, 619
BssECI CCNNGG 4 cut(s) 84, 342, 463, 562
BssMI GATC 2 cut(s) 117, 492
BssT1I CCWWGG 3 cut(s) 84, 463, 562
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 3 cut(s) 310, 434, 475
BstC8I GCNNGC 2 cut(s) 350, 419
BstDEI CTNAG 1 cut(s) 488
BstDSI CCRYGG 1 cut(s) 463
BstF5I GGATG 2 cut(s) 382, 519
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 2 cut(s) 120, 495
BstMAI GTCTC 2 cut(s) 168, 491
BstMBI GATC 2 cut(s) 117, 492
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 353
BstV1I GCAGC 2 cut(s) 249, 265
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 463
BtsCI GGATG 2 cut(s) 382, 519
BtsIMutI CAGTG 2 cut(s) 306, 471
BveI ACCTGC 1 cut(s) 369
Cac8I GCNNGC 2 cut(s) 350, 419
CaiI CAGNNNCTG 1 cut(s) 361
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 96
CseI GACGC 1 cut(s) 373
Csp6I GTAC 2 cut(s) 300, 571
CviAII CATG 2 cut(s) 464, 543
CviJI RGCY 9 cut(s) 105, 111, 278, 284, 318, 352, 402, 453, 618
CviKI_1 RGCY 9 cut(s) 105, 111, 278, 284, 318, 352, 402, 453, 618
CviQI GTAC 2 cut(s) 300, 571
DdeI CTNAG 1 cut(s) 488
DpnI GATC 2 cut(s) 119, 494
DpnII GATC 2 cut(s) 117, 492
DraI TTTAAA 1 cut(s) 60
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 402
Eco130I CCWWGG 3 cut(s) 84, 463, 562
Eco24I GRGCYC 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 402
Eco57I CTGAAG 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 3 cut(s) 84, 463, 562
EcoT38I GRGCYC 1 cut(s) 404
ErhI CCWWGG 3 cut(s) 84, 463, 562
FaeI CATG 2 cut(s) 467, 546
FaqI GGGAC 1 cut(s) 443
FatI CATG 2 cut(s) 463, 542
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 3 cut(s) 263, 279, 282
FokI GGATG 2 cut(s) 389, 526
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 3 cut(s) 263, 279, 282
FspBI CTAG 4 cut(s) 177, 275, 405, 615
GlaI GCGC 1 cut(s) 142
GluI GCNGC 3 cut(s) 263, 279, 282
GsaI CCCAGC 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 144
HapII CCGG 1 cut(s) 214
HgaI GACGC 1 cut(s) 373
HhaI GCGC 1 cut(s) 143
Hin1II CATG 2 cut(s) 467, 546
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 2 cut(s) 180, 605
HpaII CCGG 1 cut(s) 214
HphI GGTGA 2 cut(s) 304, 331
Hpy166II GTNNAC 3 cut(s) 198, 272, 339
Hpy188I TCNGA 5 cut(s) 42, 79, 100, 537, 638
Hpy188III TCNNGA 5 cut(s) 115, 214, 428, 442, 490
Hpy8I GTNNAC 3 cut(s) 198, 272, 339
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 3 cut(s) 310, 434, 475
HpyCH4V TGCA 5 cut(s) 265, 364, 421, 437, 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 1 cut(s) 488
Hsp92II CATG 2 cut(s) 467, 546
HspAI GCGC 1 cut(s) 141
Kpn2I TCCGGA 1 cut(s) 213
Kzo9I GATC 2 cut(s) 117, 492
LmnI GCTCC 3 cut(s) 80, 216, 399
Lsp1109I GCAGC 2 cut(s) 249, 265
MaeI CTAG 4 cut(s) 177, 275, 405, 615
MaeIII GTNAC 2 cut(s) 134, 310
MalI GATC 2 cut(s) 119, 494
MboI GATC 2 cut(s) 117, 492
MfeI CAATTG 1 cut(s) 497
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 2 cut(s) 77, 404
MluCI AATT 2 cut(s) 219, 497
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 2 cut(s) 102, 123
MnlI CCTC 6 cut(s) 139, 163, 199, 213, 337, 461
MroI TCCGGA 1 cut(s) 213
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 257
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 1 cut(s) 94
MunI CAATTG 1 cut(s) 497
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 290
NcoI CCATGG 1 cut(s) 463
NdeII GATC 2 cut(s) 117, 492
NlaIII CATG 2 cut(s) 467, 546
NlaIV GGNNCC 1 cut(s) 494
NmuCI GTSAC 1 cut(s) 310
PaqCI CACCTGC 1 cut(s) 369
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 191
PfeI GAWTC 1 cut(s) 605
PkrI GCNGC 3 cut(s) 264, 280, 283
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 247
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 494
PspPI GGNCC 1 cut(s) 96
PstNI CAGNNNCTG 1 cut(s) 361
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 2 cut(s) 301, 572
RsaNI GTAC 2 cut(s) 300, 571
RseI CAYNNNNRTG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 404
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 3 cut(s) 263, 279, 282
Sau3AI GATC 2 cut(s) 117, 492
Sau96I GGNCC 1 cut(s) 96
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 2 cut(s) 77, 404
SfcI CTRYAG 1 cut(s) 353
SinI GGWCC 1 cut(s) 96
SmiI ATTTAAAT 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 2 cut(s) 219, 497
SsiI CCGC 1 cut(s) 281
SspMI CTAG 4 cut(s) 177, 275, 405, 615
SstI GAGCTC 1 cut(s) 404
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 3 cut(s) 84, 463, 562
SwaI ATTTAAAT 1 cut(s) 60
TaaI ACNGT 3 cut(s) 310, 434, 475
TasI AATT 2 cut(s) 219, 497
TatI WGTACW 1 cut(s) 570
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 2 cut(s) 313, 478
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 2 cut(s) 262, 278
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 2 cut(s) 17, 564
TspGWI ACGGA 3 cut(s) 156, 183, 520
TspRI CASTG 2 cut(s) 313, 478
VpaK11BI GGWCC 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 271
XspI CTAG 4 cut(s) 177, 275, 405, 615
ZrmI AGTACT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.