Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8287401.1

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 546

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8287401.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

gatagttatgggggatacatggttgcttttgctgggcataaatatgctgcaaggtctactgcggcttttgttgccaatagtacctacactgtcaccagctttactcttgtgcttgagttcaccgagggcaggctgcagcacctgcattggaaaagggatgggtgcgtcaaatgttctgggagctccaggttcgttttcctgcacaatcgggactgtgcaatcaagacaaacagctgcaaaacccatggaggcactgtggattgcagtgtcaggaactcaggatccaattggcattttctgggacggataagcacctatccattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

12.0

Weight (kDa)

9.3

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	56
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	2 cut(s)	276, 289
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	185
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	3 cut(s)	99, 183, 234
AluI	AGCT	3 cut(s)	99, 183, 234
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	276, 289
AlwNI	CAGNNNCTG	1 cut(s)	142
ApeKI	GCWGC	4 cut(s)	47, 133, 136, 234
AsuHPI	GGTGA	2 cut(s)	85, 112
BamHI	GGATCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	4 cut(s)	34, 120, 148, 221
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	187
BciVI	GTATCC	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	8
BisI	GCNGC	5 cut(s)	48, 63, 134, 137, 235
BlsI	GCNGC	5 cut(s)	49, 64, 135, 138, 236
Bme1390I	CCNGG	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	123, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	123, 244
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	291
BseXI	GCAGC	4 cut(s)	34, 120, 148, 221
BseYI	CCCAGC	1 cut(s)	32
BsgI	GTGCAG	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	185
BslFI	GGGAC	2 cut(s)	224, 315
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmFI	GGGAC	2 cut(s)	224, 315
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	281
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	150
BspPI	GGATC	2 cut(s)	276, 289
BssECI	CCNNGG	2 cut(s)	123, 244
BssMI	GATC	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	3 cut(s)	91, 215, 256
BstAPI	GCANNNNNTGC	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	277
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 142
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	4 cut(s)	34, 120, 148, 221
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	3 cut(s)	87, 252, 271
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	131
CaiI	CAGNNNCTG	1 cut(s)	142
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	2 cut(s)	19, 245
CviJI	RGCY	5 cut(s)	65, 99, 133, 183, 234
CviKI_1	RGCY	5 cut(s)	65, 99, 133, 183, 234
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	2 cut(s)	22, 248
FaiI	YATR	5 cut(s)	9, 20, 39, 45, 246
FaqI	GGGAC	2 cut(s)	224, 315
FatI	CATG	2 cut(s)	18, 244
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	5 cut(s)	48, 63, 134, 137, 235
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	5 cut(s)	48, 63, 134, 137, 235
GluI	GCNGC	5 cut(s)	48, 63, 134, 137, 235
GsaI	CCCAGC	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	169
HgaI	GACGC	1 cut(s)	154
Hin1II	CATG	2 cut(s)	22, 248
HphI	GGTGA	2 cut(s)	85, 112
Hpy166II	GTNNAC	2 cut(s)	57, 120
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	4 cut(s)	209, 223, 271, 279
Hpy8I	GTNNAC	2 cut(s)	57, 120
HpyCH4III	ACNGT	3 cut(s)	91, 215, 256
HpyCH4V	TGCA	7 cut(s)	50, 136, 145, 202, 218, 237, 264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 142
HpyF3I	CTNAG	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	22, 248
Kzo9I	GATC	1 cut(s)	281
LmnI	GCTCC	2 cut(s)	180, 188
Lsp1109I	GCAGC	4 cut(s)	34, 120, 148, 221
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MfeI	CAATTG	1 cut(s)	286
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	1 cut(s)	286
MnlI	CCTC	2 cut(s)	118, 242
MslI	CAYNNNNRTG	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	187
MunI	CAATTG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	71, 142
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	22, 248
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	91
PaqCI	CACCTGC	1 cut(s)	150
PkrI	GCNGC	5 cut(s)	49, 64, 135, 138, 236
Psp124BI	GAGCTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	42
SacI	GAGCTC	1 cut(s)	185
SatI	GCNGC	5 cut(s)	48, 63, 134, 137, 235
Sau3AI	GATC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	8 cut(s)	56, 86, 101, 144, 185, 191, 236, 317
SfcI	CTRYAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	3 cut(s)	91, 215, 256
TasI	AATT	1 cut(s)	286
TauI	GCSGC	1 cut(s)	65
TscAI	CASTG	3 cut(s)	94, 259, 271
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	4 cut(s)	47, 133, 136, 234
Tsp45I	GTSAC	1 cut(s)	91
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	3 cut(s)	94, 259, 271
XmiI	GTMKAC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.