RchiOBHm_Chr6g0271161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003126
Physical Location & Seq
Forward (+)
29473651 .. 29474139
489 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24325

Sequence Viewer

Length: 390 bp
ATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGCGGCTTTTGTTGCCAATAGTACCTACACTGTCACCAGCTTTACTCTTGTAAGTGAGCAAGGAAATTGCAATTGGATTTGGAGTTTGAATTCGTTAATGTCGGATGGGTGCGTCAAATGTTCTGGGAGCTCCAGGTTCATTTGCCTGCACAATCGGGACTGTGCAATCAAGACAAACAGCTACAAAACCCATGGAGGCACTGTGGATTGCAGTCTCAGGATCCAATTGGCATTTTCTGGGACGGATAAGCACCTATCCGTTCTGAACTCATGGTATGAAGCACAGAACCTTGGTCAGTACTCCCTTTATGGCCTGTATTCAAATCTGAAGGATTCTCTCACTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.16

Weight (kDa)

8.56

Isoelectric Point (pI)

21.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 38
AciI CCGC 1 cut(s) 44
AclWI GGATC 2 cut(s) 256, 269
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 2 cut(s) 64, 341
AgsI TTSAA 2 cut(s) 130, 363
AjnI CCWGG 1 cut(s) 173
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 4 cut(s) 81, 171, 222, 387
AluI AGCT 4 cut(s) 81, 171, 222, 387
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 2 cut(s) 256, 269
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 67
BamHI GGATCC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 2 cut(s) 384, 388
BisI GCNGC 2 cut(s) 30, 45
BlsI GCNGC 2 cut(s) 31, 46
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 232, 331
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 2 cut(s) 232, 331
BseGI GGATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 173
BshFI GGCC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 173
BslFI GGGAC 2 cut(s) 212, 295
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 212, 295
BsnI GGCC 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 261
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 263
BspPI GGATC 2 cut(s) 256, 269
BssECI CCNNGG 2 cut(s) 232, 331
BssMI GATC 1 cut(s) 261
BssT1I CCWWGG 2 cut(s) 232, 331
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 3 cut(s) 73, 203, 244
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 257
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BsuRI GGCC 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 69, 240
Cac8I GCNNGC 1 cut(s) 188
CseI GACGC 1 cut(s) 142
Csp6I GTAC 2 cut(s) 63, 340
CviAII CATG 2 cut(s) 233, 312
CviJI RGCY 6 cut(s) 47, 81, 171, 222, 354, 387
CviKI_1 RGCY 6 cut(s) 47, 81, 171, 222, 354, 387
CviQI GTAC 2 cut(s) 63, 340
DdeI CTNAG 1 cut(s) 257
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 232, 331
Eco24I GRGCYC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 173
EcoT14I CCWWGG 2 cut(s) 232, 331
EcoT38I GRGCYC 1 cut(s) 173
ErhI CCWWGG 2 cut(s) 232, 331
FaeI CATG 2 cut(s) 236, 315
FaiI YATR 6 cut(s) 21, 27, 234, 313, 318, 351
FaqI GGGAC 2 cut(s) 212, 295
FatI CATG 2 cut(s) 232, 311
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 30, 45
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 30, 45
FspBI CTAG 2 cut(s) 384, 388
GluI GCNGC 2 cut(s) 30, 45
GsaI CCCAGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 157
HaeIII GGCC 1 cut(s) 354
HgaI GACGC 1 cut(s) 142
Hin1II CATG 2 cut(s) 236, 315
HinfI GANTC 1 cut(s) 374
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 3 cut(s) 145, 306, 369
Hpy188III TCNNGA 3 cut(s) 197, 211, 259
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 3 cut(s) 73, 203, 244
HpyCH4V TGCA 5 cut(s) 32, 111, 190, 206, 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 257
Hsp92II CATG 2 cut(s) 236, 315
Kzo9I GATC 1 cut(s) 261
LmnI GCTCC 2 cut(s) 168, 176
LpnPI CCDG 8 cut(s) 91, 150, 160, 187, 200, 244, 264, 368
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 2 cut(s) 384, 388
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MfeI CAATTG 2 cut(s) 112, 266
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 4 cut(s) 106, 112, 130, 266
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 1 cut(s) 230
MseI TTAA 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 175
MunI CAATTG 2 cut(s) 112, 266
MvaI CCWGG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 53
NcoI CCATGG 1 cut(s) 232
NdeII GATC 1 cut(s) 261
NlaIII CATG 2 cut(s) 236, 315
NlaIV GGNNCC 1 cut(s) 263
NmuCI GTSAC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 2 cut(s) 31, 46
Psp124BI GAGCTC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 173
PspFI CCCAGC 1 cut(s) 14
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 263
PsuI RGATCY 1 cut(s) 261
RsaI GTAC 2 cut(s) 64, 341
RsaNI GTAC 2 cut(s) 63, 340
RseI CAYNNNNRTG 1 cut(s) 24
SacI GAGCTC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 2 cut(s) 30, 45
Sau3AI GATC 1 cut(s) 261
ScaI AGTACT 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 173
SetI ASST 9 cut(s) 38, 68, 83, 173, 179, 224, 297, 333, 389
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 4 cut(s) 106, 112, 130, 266
SsiI CCGC 1 cut(s) 44
SspMI CTAG 2 cut(s) 384, 388
SstI GAGCTC 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 173
StyI CCWWGG 2 cut(s) 232, 331
TaaI ACNGT 3 cut(s) 73, 203, 244
TasI AATT 4 cut(s) 106, 112, 130, 266
TatI WGTACW 1 cut(s) 339
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 2 cut(s) 76, 247
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 169, 333
TspGWI ACGGA 2 cut(s) 289, 299
TspRI CASTG 2 cut(s) 76, 247
XapI RAATTY 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 38
XspI CTAG 2 cut(s) 384, 388
ZrmI AGTACT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.