Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Reverse (-)

20433732 .. 20434861

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG205500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCCGTCGCCGCAACCACATGGACGGCGATCTTCATCATCGCCGCCACGCTCCGTTCAATCGAATGCGGCGACAACAACCACGTCTACTCGCCGTGCTCCGACACCAAGGTCGCCAGGTCCGACGGCTTCAGCTTCGGGATCGCCTTCGCCTCCAGGGACGTGTTTCTCCGAAACGGCGCAAACTCCACCTCCCAGTTGTCCCCGTGCGACACTAGACTCTCGCTCTCCACCGCCAATTCTCAGATCGCCGTTTTCCGGCCAAAGGTCGACGAGATCTCTCTCCTCTCCGTCAACTCCTCCTCTTTCGCTCCGGATAATTATGGGGGATATATGGTTGCTTTTGCTGGGCATAAATATGCTGCAAGGTCTACTGCGGCTTTTGTTGCCAACAGTACCTACACTGTCACCAGCTTTACTCTTGTGCTTGAGTTCACCAAGGGCAGGCTGCAGCACCTGTATTGGAAAAGGGATGGGTGCGCCAAATGTTCTGGGAGCTCCCAGAGCTCCGGCTTCGTTTGCCTCAACAATCAGGACTGTGCAATCAAGACTAACAGCTGCAAAACCCATGGAGGCACTGTGGATTGCAGCCTCGGGATCCAATTGGCATTTTCTGGGACTGATAAGCACCTATCGGTTCTGAACTCATGGTATGAAGTACAGAACCTTGGTCAGTACTCCCTTTACGGTCTCTATTCAAATCTGAAGGATTCTCTCACTAGCCAGTATAACAAGTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

26.79

Weight (kDa)

8.54

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AccI	GTMKAC	3 cut(s)	87, 270, 371
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	5 cut(s)	12, 45, 69, 234, 377
AclWI	GGATC	3 cut(s)	149, 592, 605
AcoI	YGGCCR	2 cut(s)	3, 260
AcuI	CTGAAG	2 cut(s)	115, 725
AfaI	GTAC	3 cut(s)	397, 660, 677
AfiI	CCNNNNNNNGG	3 cut(s)	258, 265, 444
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	60, 699
AjiI	CACGTC	2 cut(s)	85, 163
AjnI	CCWGG	2 cut(s)	116, 155
AluBI	AGCT	5 cut(s)	135, 414, 498, 507, 558
AluI	AGCT	5 cut(s)	135, 414, 498, 507, 558
Alw21I	GWGCWC	3 cut(s)	101, 500, 509
Alw26I	GTCTC	1 cut(s)	695
AlwI	GGATC	3 cut(s)	149, 592, 605
AlwNI	CAGNNNCTG	1 cut(s)	457
Ama87I	CYCGRG	1 cut(s)	593
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	2 cut(s)	3, 260
ApeKI	GCWGC	5 cut(s)	362, 448, 451, 558, 588
AspLEI	GCGC	2 cut(s)	182, 482
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	400, 427
AvaI	CYCGRG	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	120
BamHI	GGATCC	1 cut(s)	597
BanII	GRGCYC	2 cut(s)	500, 509
Bbv12I	GWGCWC	3 cut(s)	101, 500, 509
BbvI	GCAGC	5 cut(s)	349, 435, 463, 545, 600
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	5 cut(s)	42, 79, 142, 193, 236
BciT130I	CCWGG	2 cut(s)	118, 157
BcoDI	GTCTC	1 cut(s)	695
BfaI	CTAG	2 cut(s)	216, 720
BfmI	CTRYAG	1 cut(s)	449
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	9 cut(s)	12, 45, 70, 363, 378, 449, 452, 559, 589
BlsI	GCNGC	9 cut(s)	13, 46, 71, 364, 379, 450, 453, 560, 590
BmcAI	AGTACT	1 cut(s)	677
Bme1390I	CCNGG	2 cut(s)	118, 157
Bme18I	GGWCC	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	593
BmgBI	CACGTC	2 cut(s)	85, 163
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	599
BmrFI	CCNGG	2 cut(s)	118, 157
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BpmI	CTGGAG	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	695
BsaJI	CCNNGG	6 cut(s)	108, 156, 438, 568, 592, 667
BsaWI	WCCGGW	1 cut(s)	313
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 564, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 265, 444
Bse1I	ACTGG	2 cut(s)	196, 724
Bse8I	GATNNNNATC	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	2 cut(s)	118, 157
BseDI	CCNNGG	6 cut(s)	108, 156, 438, 568, 592, 667
BseGI	GGATG	1 cut(s)	478
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	3 cut(s)	258, 265, 444
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	2 cut(s)	196, 724
BseRI	GAGGAG	3 cut(s)	275, 289, 292
BseXI	GCAGC	5 cut(s)	349, 435, 463, 545, 600
BseYI	CCCAGC	1 cut(s)	347
BshFI	GGCC	2 cut(s)	5, 262
BsiHKAI	GWGCWC	3 cut(s)	101, 500, 509
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	3 cut(s)	259, 314, 510
BslFI	GGGAC	3 cut(s)	173, 187, 631
BslI	CCNNNNNNNGG	3 cut(s)	258, 265, 444
BsmAI	GTCTC	1 cut(s)	695
BsmFI	GGGAC	3 cut(s)	173, 187, 631
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	5, 262
Bso31I	GGTCTC	1 cut(s)	695
BsoBI	CYCGRG	1 cut(s)	593
Bsp1286I	GDGCHC	3 cut(s)	101, 500, 509
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	5 cut(s)	30, 141, 246, 276, 597
Bsp19I	CCATGG	1 cut(s)	568
BspACI	CCGC	5 cut(s)	12, 45, 69, 234, 377
BspANI	GGCC	2 cut(s)	5, 262
BspCNI	CTCAG	1 cut(s)	256
BspEI	TCCGGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	599
BspMAI	CTGCAG	1 cut(s)	453
BspPI	GGATC	3 cut(s)	149, 592, 605
BspTNI	GGTCTC	1 cut(s)	695
BsrI	ACTGG	2 cut(s)	196, 724
BssECI	CCNNGG	6 cut(s)	108, 156, 438, 568, 592, 667
BssMI	GATC	5 cut(s)	30, 141, 246, 276, 597
BssT1I	CCWWGG	4 cut(s)	108, 438, 568, 667
Bst2UI	CCWGG	2 cut(s)	118, 157
Bst4CI	ACNGT	5 cut(s)	395, 406, 539, 580, 689
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	1 cut(s)	478
BstHHI	GCGC	2 cut(s)	182, 482
BstKTI	GATC	5 cut(s)	33, 144, 249, 279, 600
BstMAI	GTCTC	1 cut(s)	695
BstMBI	GATC	5 cut(s)	30, 141, 246, 276, 597
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 386, 504, 519
BstNI	CCWGG	2 cut(s)	118, 157
BstSCI	CCNGG	2 cut(s)	116, 155
BstSFI	CTRYAG	1 cut(s)	449
BstV1I	GCAGC	5 cut(s)	349, 435, 463, 545, 600
BstX2I	RGATCY	2 cut(s)	276, 597
BstYI	RGATCY	2 cut(s)	276, 597
BsuRI	GGCC	2 cut(s)	5, 262
BtgI	CCRYGG	1 cut(s)	568
BtgZI	GCGATG	1 cut(s)	25
BtrI	CACGTC	2 cut(s)	85, 163
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	402, 576
Cac8I	GCNNGC	1 cut(s)	446
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	2 cut(s)	182, 482
Cfr13I	GGNCC	1 cut(s)	120
Csp6I	GTAC	3 cut(s)	396, 659, 676
CviAII	CATG	3 cut(s)	21, 569, 648
CviQI	GTAC	3 cut(s)	396, 659, 676
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	5 cut(s)	32, 143, 248, 278, 599
DpnII	GATC	5 cut(s)	30, 141, 246, 276, 597
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	2 cut(s)	3, 260
Ecl136II	GAGCTC	2 cut(s)	498, 507
Eco130I	CCWWGG	4 cut(s)	108, 438, 568, 667
Eco24I	GRGCYC	2 cut(s)	500, 509
Eco31I	GGTCTC	1 cut(s)	695
Eco47I	GGWCC	1 cut(s)	120
Eco53kI	GAGCTC	2 cut(s)	498, 507
Eco57I	CTGAAG	2 cut(s)	115, 725
Eco88I	CYCGRG	1 cut(s)	593
EcoICRI	GAGCTC	2 cut(s)	498, 507
EcoRII	CCWGG	2 cut(s)	116, 155
EcoT14I	CCWWGG	4 cut(s)	108, 438, 568, 667
EcoT38I	GRGCYC	2 cut(s)	500, 509
ErhI	CCWWGG	4 cut(s)	108, 438, 568, 667
FaeI	CATG	3 cut(s)	24, 572, 651
FaqI	GGGAC	3 cut(s)	173, 187, 631
FatI	CATG	3 cut(s)	20, 568, 647
FblI	GTMKAC	3 cut(s)	87, 270, 371
Fnu4HI	GCNGC	9 cut(s)	12, 45, 70, 363, 378, 449, 452, 559, 589
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	2 cut(s)	500, 509
Fsp4HI	GCNGC	9 cut(s)	12, 45, 70, 363, 378, 449, 452, 559, 589
FspBI	CTAG	2 cut(s)	216, 720
GlaI	GCGC	2 cut(s)	181, 481
GluI	GCNGC	9 cut(s)	12, 45, 70, 363, 378, 449, 452, 559, 589
GsaI	CCCAGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	5, 262
HapII	CCGG	3 cut(s)	259, 314, 510
HhaI	GCGC	2 cut(s)	182, 482
Hin1II	CATG	3 cut(s)	24, 572, 651
Hin6I	GCGC	2 cut(s)	180, 480
HinP1I	GCGC	2 cut(s)	180, 480
HincII	GTYRAC	2 cut(s)	271, 295
HindII	GTYRAC	2 cut(s)	271, 295
HinfI	GANTC	2 cut(s)	219, 710
HpaII	CCGG	3 cut(s)	259, 314, 510
HphI	GGTGA	2 cut(s)	400, 427
Hpy166II	GTNNAC	5 cut(s)	88, 271, 295, 372, 435
Hpy188I	TCNGA	7 cut(s)	103, 124, 173, 246, 642, 705, 743
Hpy188III	TCNNGA	5 cut(s)	139, 314, 533, 547, 595
Hpy8I	GTNNAC	5 cut(s)	88, 271, 295, 372, 435
Hpy99I	CGWCG	3 cut(s)	11, 128, 275
HpyAV	CCTTC	2 cut(s)	157, 700
HpyCH4III	ACNGT	5 cut(s)	395, 406, 539, 580, 689
HpyCH4IV	ACGT	2 cut(s)	84, 162
HpyCH4V	TGCA	5 cut(s)	365, 451, 542, 561, 588
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 386, 504, 519
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	84, 162
Hsp92II	CATG	3 cut(s)	24, 572, 651
HspAI	GCGC	2 cut(s)	180, 480
Kpn2I	TCCGGA	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	30, 141, 246, 276, 597
LmnI	GCTCC	6 cut(s)	57, 104, 316, 495, 503, 512
Lsp1109I	GCAGC	5 cut(s)	349, 435, 463, 545, 600
MaeI	CTAG	2 cut(s)	216, 720
MaeII	ACGT	2 cut(s)	84, 162
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	5 cut(s)	32, 143, 248, 278, 599
MboI	GATC	5 cut(s)	30, 141, 246, 276, 597
MboII	GAAGA	1 cut(s)	25
MfeI	CAATTG	1 cut(s)	602
MflI	RGATCY	2 cut(s)	276, 597
MhlI	GDGCHC	3 cut(s)	101, 500, 509
MluCI	AATT	3 cut(s)	238, 319, 602
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	2 cut(s)	126, 147
MnlI	CCTC	8 cut(s)	163, 202, 296, 310, 313, 533, 566, 602
MroI	TCCGGA	1 cut(s)	313
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	558
MspI	CCGG	3 cut(s)	259, 314, 510
MspR9I	CCNGG	2 cut(s)	118, 157
MunI	CAATTG	1 cut(s)	602
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	2 cut(s)	118, 157
MwoI	GCNNNNNNNGC	4 cut(s)	11, 386, 504, 519
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	5 cut(s)	30, 141, 246, 276, 597
NlaIII	CATG	3 cut(s)	24, 572, 651
NlaIV	GGNNCC	1 cut(s)	599
NmuCI	GTSAC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 120
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	710
PkrI	GCNGC	9 cut(s)	13, 46, 71, 364, 379, 450, 453, 560, 590
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
Psp124BI	GAGCTC	2 cut(s)	500, 509
Psp6I	CCWGG	2 cut(s)	116, 155
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	2 cut(s)	116, 155
PspN4I	GGNNCC	1 cut(s)	599
PspPI	GGNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	453
PstNI	CAGNNNCTG	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	276, 597
PvuII	CAGCTG	1 cut(s)	558
RsaI	GTAC	3 cut(s)	397, 660, 677
RsaNI	GTAC	3 cut(s)	396, 659, 676
RseI	CAYNNNNRTG	1 cut(s)	357
SacI	GAGCTC	2 cut(s)	500, 509
SalI	GTCGAC	1 cut(s)	269
SatI	GCNGC	9 cut(s)	12, 45, 70, 363, 378, 449, 452, 559, 589
Sau3AI	GATC	5 cut(s)	30, 141, 246, 276, 597
Sau96I	GGNCC	1 cut(s)	120
ScaI	AGTACT	1 cut(s)	677
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	118, 157
SduI	GDGCHC	3 cut(s)	101, 500, 509
SfcI	CTRYAG	1 cut(s)	449
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	3 cut(s)	238, 319, 602
SsiI	CCGC	5 cut(s)	12, 45, 69, 234, 377
SspMI	CTAG	2 cut(s)	216, 720
SstI	GAGCTC	2 cut(s)	500, 509
StyD4I	CCNGG	2 cut(s)	116, 155
StyI	CCWWGG	4 cut(s)	108, 438, 568, 667
TaaI	ACNGT	5 cut(s)	395, 406, 539, 580, 689
TaiI	ACGT	2 cut(s)	87, 165
TaqI	TCGA	2 cut(s)	63, 270
TasI	AATT	3 cut(s)	238, 319, 602
TatI	WGTACW	2 cut(s)	658, 675
TauI	GCSGC	4 cut(s)	14, 47, 72, 380
TfiI	GAWTC	1 cut(s)	710
TscAI	CASTG	2 cut(s)	409, 583
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	5 cut(s)	362, 448, 451, 558, 588
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	25, 669
TspGWI	ACGGA	2 cut(s)	44, 280
TspRI	CASTG	2 cut(s)	409, 583
VpaK11BI	GGWCC	1 cut(s)	120
XmiI	GTMKAC	3 cut(s)	87, 270, 371
XspI	CTAG	2 cut(s)	216, 720
ZrmI	AGTACT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.