Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003126

Physical Location & Seq

Genomic Coordinates Reverse (-)

4683512 .. 4693050

Gene Structure 9539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1042300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGACGACGACCTTGGTGATCACAATCATGACAATGACGACGGCGGTGATTTAATCGACGGTAGCAACAACAACAACGTGTACTCGCCGTGCGCGGACACGACGGTGGAGAGGTCCGACGGGTTCACCTTCGGAATTGCCTTCGCCTCCAAGGAATCTTTCCAACGAAACGGCACCGTTCAGCTGTCTCCCTGCGACTCCAGACTCTTTCTCTCCTCCAATGCCCAGATCTCCGTTTTCCGACCCAAAGTTGACGAGATCTCCCTCCTCTCCGTCAACTCCTCCTCCTTCAATCCGGATACTTATGGGTTTATGGTTGCGTTTGCCGGGCGTAAATATGCCGCAAGGTGCTTGAGTTCAATAAGGGCAAGGCTGCAGAACTTGTACTGGAAAAAGGATGGGTGCTCCAAATGTTCAGGGAGCTCCAGCTTTGTTTGCCTCAACAATCAGCACTGCGCGATCAAGACCTCGAGCTGCATAAACCATGGTGGCTCTGTGGACTGCAGCCTAGAAATCCAATTGGCATTTTCTGGCACGGACAAGCACCTTTCGGTTCTGAACTCATGGTATGAAGTTGCAAACCTTAGGCAGTACTCACTCTGTGGTCGACAGGCTAAGGACCCATTCCAACAACACCGATATTGTTCCCACTTAACCACTTGCACAACCCTCAGGTGTGGGGTTTTATCACAAAAGGCTTCGGTATTAGTTAAAGTGAGACATTTCCCCATTGGAAGTTCGAATATGGTCCAAGAGAATCGAATAAAGTGGTTCATTGGTTGGGTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

29.13

Weight (kDa)

7.91

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11800
fragaria_vesca	FvH4_6g20620
malus_domestica	MD02G1202900.v1.1 MD12G1042300.v1.1 MD14G1041500.v1.1
prunus_persica	Prupe.7G092600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c32g0501541 RchiOBHm_Chr1g0326381 RchiOBHm_Chr1g0343841 RchiOBHm_Chr2g0161561 RchiOBHm_Chr3g0476431 RchiOBHm_Chr3g0487051 RchiOBHm_Chr4g0411221 RchiOBHm_Chr5g0032531 RchiOBHm_Chr5g0056261 RchiOBHm_Chr6g0271161 RchiOBHm_Chr7g0226741
rosa_laevigata	RLG00000015405 RLG00000023767
rosa_multiflora	Rmu_co8287401.1_g000001 Rmu_sc0000744.1_g000072 Rmu_sc0004556.1_g000008
rosa_roxburghii	Rroxscaffold_5G00364840 Rroxscaffold_6G00405270
rosa_rugosa	Rorug03G0154400
rosa_samantha	Rh3AG205500 Rh3CG231700 Rh3DG231600 Rh4DG173300 Rh5DG274500 Rh6AG328100 Rh6CG188500
rosa_wichuraiana	Rw2G013950 Rw3G018690 Rw3G022480 Rw5G026690 Rw6G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	607
AccII	CGCG	2 cut(s)	95, 458
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	3 cut(s)	45, 95, 342
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	3 cut(s)	83, 386, 593
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	292, 360
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	4 cut(s)	184, 423, 429, 474
AluI	AGCT	4 cut(s)	184, 423, 429, 474
Alw21I	GWGCWC	2 cut(s)	407, 425
Alw26I	GTCTC	2 cut(s)	192, 712
Ama87I	CYCGRG	1 cut(s)	469
Aor13HI	TCCGGA	1 cut(s)	295
ApeKI	GCWGC	3 cut(s)	373, 474, 504
AspLEI	GCGC	2 cut(s)	95, 458
AspS9I	GGNCC	3 cut(s)	114, 619, 748
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	3 cut(s)	29, 59, 118
AsuII	TTCGAA	1 cut(s)	740
AvaI	CYCGRG	1 cut(s)	469
AvaII	GGWCC	3 cut(s)	114, 619, 748
AxyI	CCTNAGG	2 cut(s)	584, 671
BanI	GGYRCC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	425
Bbv12I	GWGCWC	2 cut(s)	407, 425
BbvI	GCAGC	3 cut(s)	360, 461, 516
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	3 cut(s)	58, 73, 187
BciVI	GTATCC	1 cut(s)	292
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	192, 712
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	2 cut(s)	374, 502
BfuI	GTATCC	1 cut(s)	292
BglII	AGATCT	2 cut(s)	228, 258
BisI	GCNGC	4 cut(s)	342, 374, 475, 505
BlsI	GCNGC	4 cut(s)	343, 375, 476, 506
BmcAI	AGTACT	1 cut(s)	593
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	3 cut(s)	114, 619, 748
BmeT110I	CYCGRG	1 cut(s)	469
BmgT120I	GGNCC	3 cut(s)	114, 619, 748
BmiI	GGNNCC	2 cut(s)	175, 621
BmrFI	CCNGG	1 cut(s)	328
BpmI	CTGGAG	2 cut(s)	184, 409
Bpu10I	CCTNAGC	1 cut(s)	615
Bpu14I	TTCGAA	1 cut(s)	740
BpuEI	CTTGAG	1 cut(s)	373
BpuMI	CCSGG	1 cut(s)	328
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	13, 150, 484
BsaWI	WCCGGW	1 cut(s)	295
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 269, 275, 299
Bse1I	ACTGG	1 cut(s)	392
Bse21I	CCTNAGG	2 cut(s)	584, 671
Bse8I	GATNNNNATC	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	295
BseDI	CCNNGG	3 cut(s)	13, 150, 484
BseGI	GGATG	1 cut(s)	403
BseJI	GATNNNNATC	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	685
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	4 cut(s)	205, 257, 271, 274
BseXI	GCAGC	3 cut(s)	360, 461, 516
Bsh1236I	CGCG	2 cut(s)	95, 458
BshNI	GGYRCC	1 cut(s)	173
BsiHKAI	GWGCWC	2 cut(s)	407, 425
BsiHKCI	CYCGRG	1 cut(s)	469
BsiSI	CCGG	2 cut(s)	296, 327
BsmAI	GTCTC	2 cut(s)	192, 712
BsoBI	CYCGRG	1 cut(s)	469
Bsp119I	TTCGAA	1 cut(s)	740
Bsp1286I	GDGCHC	2 cut(s)	407, 425
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	19, 228, 258, 459
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	3 cut(s)	45, 95, 342
BspCNI	CTCAG	1 cut(s)	684
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	2 cut(s)	95, 458
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	175, 621
BspMAI	CTGCAG	2 cut(s)	378, 506
BspT104I	TTCGAA	1 cut(s)	740
BspT107I	GGYRCC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	3 cut(s)	13, 150, 484
BssMI	GATC	4 cut(s)	19, 228, 258, 459
BssT1I	CCWWGG	3 cut(s)	13, 150, 484
Bst4CI	ACNGT	3 cut(s)	62, 106, 178
BstBI	TTCGAA	1 cut(s)	740
BstDEI	CTNAG	3 cut(s)	584, 615, 671
BstDSI	CCRYGG	1 cut(s)	484
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	2 cut(s)	95, 458
BstHHI	GCGC	2 cut(s)	95, 458
BstKTI	GATC	4 cut(s)	22, 231, 261, 462
BstMAI	GTCTC	2 cut(s)	192, 712
BstMBI	GATC	4 cut(s)	19, 228, 258, 459
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	326
BstSFI	CTRYAG	2 cut(s)	374, 502
BstUI	CGCG	2 cut(s)	95, 458
BstV1I	GCAGC	3 cut(s)	360, 461, 516
BstX2I	RGATCY	2 cut(s)	228, 258
BstYI	RGATCY	2 cut(s)	228, 258
Bsu36I	CCTNAGG	2 cut(s)	584, 671
BsuI	GTATCC	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	451
CciI	TCATGA	1 cut(s)	28
CfoI	GCGC	2 cut(s)	95, 458
Cfr13I	GGNCC	3 cut(s)	114, 619, 748
Csp6I	GTAC	3 cut(s)	82, 385, 592
CviAII	CATG	3 cut(s)	29, 485, 564
CviJI	RGCY	9 cut(s)	184, 373, 423, 429, 474, 492, 507, 614, 698
CviKI_1	RGCY	9 cut(s)	184, 373, 423, 429, 474, 492, 507, 614, 698
CviQI	GTAC	3 cut(s)	82, 385, 592
DdeI	CTNAG	3 cut(s)	584, 615, 671
DpnI	GATC	4 cut(s)	21, 230, 260, 461
DpnII	GATC	4 cut(s)	19, 228, 258, 459
DraIII	CACNNNGTG	1 cut(s)	602
Ecl136II	GAGCTC	1 cut(s)	423
Eco130I	CCWWGG	3 cut(s)	13, 150, 484
Eco24I	GRGCYC	1 cut(s)	425
Eco47I	GGWCC	3 cut(s)	114, 619, 748
Eco53kI	GAGCTC	1 cut(s)	423
Eco81I	CCTNAGG	2 cut(s)	584, 671
Eco88I	CYCGRG	1 cut(s)	469
EcoICRI	GAGCTC	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	619
EcoT14I	CCWWGG	3 cut(s)	13, 150, 484
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	3 cut(s)	13, 150, 484
FaeI	CATG	3 cut(s)	32, 488, 567
FaiI	YATR	9 cut(s)	30, 306, 314, 339, 479, 486, 565, 570, 746
FatI	CATG	3 cut(s)	28, 484, 563
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	342, 374, 475, 505
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	4 cut(s)	342, 374, 475, 505
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	2 cut(s)	94, 457
GluI	GCNGC	4 cut(s)	342, 374, 475, 505
GsuI	CTGGAG	2 cut(s)	184, 409
HapII	CCGG	2 cut(s)	296, 327
HhaI	GCGC	2 cut(s)	95, 458
Hin1II	CATG	3 cut(s)	32, 488, 567
Hin6I	GCGC	2 cut(s)	93, 456
HinP1I	GCGC	2 cut(s)	93, 456
HincII	GTYRAC	3 cut(s)	253, 277, 608
HindII	GTYRAC	3 cut(s)	253, 277, 608
HinfI	GANTC	4 cut(s)	155, 197, 204, 757
HpaII	CCGG	2 cut(s)	296, 327
HphI	GGTGA	3 cut(s)	29, 59, 118
Hpy166II	GTNNAC	6 cut(s)	82, 126, 253, 277, 499, 608
Hpy188I	TCNGA	4 cut(s)	118, 134, 242, 558
Hpy188III	TCNNGA	4 cut(s)	29, 201, 296, 463
Hpy8I	GTNNAC	6 cut(s)	82, 126, 253, 277, 499, 608
Hpy99I	CGWCG	5 cut(s)	11, 44, 62, 106, 122
HpyAV	CCTTC	3 cut(s)	139, 151, 298
HpyCH4III	ACNGT	3 cut(s)	62, 106, 178
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	5 cut(s)	376, 477, 504, 578, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpyF3I	CTNAG	3 cut(s)	584, 615, 671
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	32, 488, 567
HspAI	GCGC	2 cut(s)	93, 456
Kpn2I	TCCGGA	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	4 cut(s)	19, 228, 258, 459
LmnI	GCTCC	3 cut(s)	410, 420, 428
Lsp1109I	GCAGC	3 cut(s)	360, 461, 516
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	78
MalI	GATC	4 cut(s)	21, 230, 260, 461
MboI	GATC	4 cut(s)	19, 228, 258, 459
MfeI	CAATTG	1 cut(s)	518
MflI	RGATCY	2 cut(s)	228, 258
MhlI	GDGCHC	2 cut(s)	407, 425
MluCI	AATT	2 cut(s)	135, 518
MlyI	GAGTC	2 cut(s)	191, 198
MmeI	TCCRAC	4 cut(s)	141, 187, 265, 652
MroI	TCCGGA	1 cut(s)	295
MseI	TTAA	3 cut(s)	53, 653, 711
MslI	CAYNNNNRTG	3 cut(s)	27, 33, 104
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	2 cut(s)	296, 327
MspR9I	CCNGG	1 cut(s)	328
MunI	CAATTG	1 cut(s)	518
MvnI	CGCG	2 cut(s)	95, 458
MwoI	GCNNNNNNNGC	1 cut(s)	435
NciI	CCSGG	1 cut(s)	328
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	4 cut(s)	19, 228, 258, 459
NlaIII	CATG	3 cut(s)	32, 488, 567
NlaIV	GGNNCC	2 cut(s)	175, 621
NspV	TTCGAA	1 cut(s)	740
OliI	CACNNNNGTG	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	469
PagI	TCATGA	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	155, 757
PkrI	GCNGC	4 cut(s)	343, 375, 476, 506
PleI	GAGTC	2 cut(s)	191, 198
PpsI	GAGTC	2 cut(s)	191, 198
PpuMI	RGGWCCY	1 cut(s)	619
Psp124BI	GAGCTC	1 cut(s)	425
Psp5II	RGGWCCY	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	175, 621
PspPI	GGNCC	3 cut(s)	114, 619, 748
PspPPI	RGGWCCY	1 cut(s)	619
PspXI	VCTCGAGB	1 cut(s)	469
PstI	CTGCAG	2 cut(s)	378, 506
PsuI	RGATCY	2 cut(s)	228, 258
PvuII	CAGCTG	1 cut(s)	184
RsaI	GTAC	3 cut(s)	83, 386, 593
RsaNI	GTAC	3 cut(s)	82, 385, 592
RseI	CAYNNNNRTG	3 cut(s)	27, 33, 104
SacI	GAGCTC	1 cut(s)	425
SalI	GTCGAC	1 cut(s)	606
SaqAI	TTAA	3 cut(s)	53, 653, 711
SatI	GCNGC	4 cut(s)	342, 374, 475, 505
Sau3AI	GATC	4 cut(s)	19, 228, 258, 459
Sau96I	GGNCC	3 cut(s)	114, 619, 748
ScaI	AGTACT	1 cut(s)	593
SchI	GAGTC	2 cut(s)	191, 198
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	2 cut(s)	407, 425
SfcI	CTRYAG	2 cut(s)	374, 502
Sfr274I	CTCGAG	1 cut(s)	469
SfuI	TTCGAA	1 cut(s)	740
SinI	GGWCC	3 cut(s)	114, 619, 748
SlaI	CTCGAG	1 cut(s)	469
SmiMI	CAYNNNNRTG	3 cut(s)	27, 33, 104
SmlI	CTYRAG	2 cut(s)	352, 469
SmoI	CTYRAG	2 cut(s)	352, 469
Sse9I	AATT	2 cut(s)	135, 518
SsiI	CCGC	3 cut(s)	45, 95, 342
SspMI	CTAG	1 cut(s)	509
SstI	GAGCTC	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	3 cut(s)	13, 150, 484
TaaI	ACNGT	3 cut(s)	62, 106, 178
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	5 cut(s)	57, 470, 607, 740, 760
TasI	AATT	2 cut(s)	135, 518
TatI	WGTACW	3 cut(s)	81, 384, 591
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	155, 757
Tru1I	TTAA	3 cut(s)	53, 653, 711
Tru9I	TTAA	3 cut(s)	53, 653, 711
TscAI	CASTG	1 cut(s)	458
TseI	GCWGC	3 cut(s)	373, 474, 504
TspDTI	ATGAA	2 cut(s)	585, 763
TspGWI	ACGGA	3 cut(s)	223, 262, 551
TspRI	CASTG	1 cut(s)	458
VpaK11BI	GGWCC	3 cut(s)	114, 619, 748
XhoI	CTCGAG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	607
XspI	CTAG	1 cut(s)	509
ZrmI	AGTACT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.