Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Reverse (-)

7577712 .. 7579789

Gene Structure 2078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGATTTGGTTCAGAAGCAGAAGAGTTTGCAAGATTACACCAAATCACTCTTCTTAGAAGGGATTTTGGACAGCCAGTTCTTGCAGCTGCAACAACTACAAGATGAAAGCAATCCAGATTTTGTTTCACAAGTTGTCACACTCTTCTTCCAAGACTCTGATAGGATTCTCAATGATCTCTCACTTTCCCTAGATCAACAAGTTGTAGACTTTAAAAAAGTTGATCCCCATGTTCATCAACTCAAAGGTAGCAGCTCCAGTATAGGAGCACAGAGAGTTAAGAATGCTTGTGTTGTCTTCCGCAGCTTCTGCGAGCAGCAAAATGTCGAAGCATGTCATAGATGTTTGCAACAAGTGAAGCAAGAGTATTATCTTGTGAAAAACAGATTAGAGACTCTGTTCAAGCTGGAGCAACAGATTGTAGCTTCTGGTGGAATGATCCCGGCCGTCGAACTCGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

154

Amino Acids

17.61

Weight (kDa)

5.31

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	44 - 126	2.3e-15	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	2 cut(s)	218, 433
AcoI	YGGCCR	1 cut(s)	444
AgsI	TTSAA	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AloI	GAACNNNNNNTCC	2 cut(s)	62, 94
AluBI	AGCT	5 cut(s)	88, 255, 306, 406, 425
AluI	AGCT	5 cut(s)	88, 255, 306, 406, 425
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	2 cut(s)	218, 433
AlwNI	CAGNNNCTG	1 cut(s)	309
AoxI	GGCC	1 cut(s)	444
ApeKI	GCWGC	5 cut(s)	85, 88, 252, 303, 316
AsuC2I	CCSGG	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	5 cut(s)	75, 97, 264, 315, 328
BceAI	ACGGC	1 cut(s)	431
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	5 cut(s)	86, 89, 253, 304, 317
BlsI	GCNGC	5 cut(s)	87, 90, 254, 305, 318
Bme1390I	CCNGG	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	289
BpmI	CTGGAG	2 cut(s)	241, 428
BpuMI	CCSGG	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	76, 258
BseNI	ACTGG	2 cut(s)	76, 258
BseX3I	CGGCCG	1 cut(s)	444
BseXI	GCAGC	5 cut(s)	75, 97, 264, 315, 328
Bsh1285I	CGRYCG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	4 cut(s)	175, 193, 223, 438
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	1 cut(s)	446
BspPI	GGATC	2 cut(s)	218, 433
BsrI	ACTGG	2 cut(s)	76, 258
BssMI	GATC	4 cut(s)	175, 193, 223, 438
Bst6I	CTCTTC	3 cut(s)	17, 56, 149
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	1 cut(s)	55
BstKTI	GATC	4 cut(s)	178, 196, 226, 441
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	4 cut(s)	175, 193, 223, 438
BstMCI	CGRYCG	1 cut(s)	447
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	441
BstV1I	GCAGC	5 cut(s)	75, 97, 264, 315, 328
BstV2I	GAAGAC	1 cut(s)	289
BstZI	CGGCCG	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	446
Cac8I	GCNNGC	1 cut(s)	314
CaiI	CAGNNNCTG	1 cut(s)	309
CviAII	CATG	2 cut(s)	230, 333
CviJI	RGCY	7 cut(s)	75, 88, 255, 306, 406, 425, 446
CviKI_1	RGCY	7 cut(s)	75, 88, 255, 306, 406, 425, 446
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	4 cut(s)	177, 195, 225, 440
DpnII	GATC	4 cut(s)	175, 193, 223, 438
DraI	TTTAAA	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	444
EagI	CGGCCG	1 cut(s)	444
Eam1104I	CTCTTC	3 cut(s)	17, 56, 149
EarI	CTCTTC	3 cut(s)	17, 56, 149
EclXI	CGGCCG	1 cut(s)	444
Eco52I	CGGCCG	1 cut(s)	444
FaeI	CATG	2 cut(s)	233, 336
FaiI	YATR	4 cut(s)	231, 263, 334, 339
FatI	CATG	2 cut(s)	229, 332
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	5 cut(s)	86, 89, 253, 304, 317
Fsp4HI	GCNGC	5 cut(s)	86, 89, 253, 304, 317
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	5 cut(s)	86, 89, 253, 304, 317
GsuI	CTGGAG	2 cut(s)	241, 428
HaeIII	GGCC	1 cut(s)	446
HapII	CCGG	1 cut(s)	443
Hin1II	CATG	2 cut(s)	233, 336
HinfI	GANTC	3 cut(s)	155, 166, 394
HpaII	CCGG	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	15, 160, 458
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	1 cut(s)	53
HpyCH4V	TGCA	4 cut(s)	31, 85, 91, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	233, 336
Kzo9I	GATC	4 cut(s)	175, 193, 223, 438
LmnI	GCTCC	3 cut(s)	260, 266, 409
LpnPI	CCDG	6 cut(s)	89, 129, 271, 392, 414, 456
Lsp1109I	GCAGC	5 cut(s)	75, 97, 264, 315, 328
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	4 cut(s)	177, 195, 225, 440
MboI	GATC	4 cut(s)	175, 193, 223, 438
MboII	GAAGA	5 cut(s)	34, 43, 136, 139, 289
MhlI	GDGCHC	1 cut(s)	271
MlyI	GAGTC	2 cut(s)	149, 388
MseI	TTAA	2 cut(s)	213, 279
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	309
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	4 cut(s)	175, 193, 223, 438
NlaIII	CATG	2 cut(s)	233, 336
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	336
PctI	GAATGC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	5 cut(s)	87, 90, 254, 305, 318
PleI	GAGTC	2 cut(s)	149, 388
PpsI	GAGTC	2 cut(s)	149, 388
PstNI	CAGNNNCTG	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	213, 279
SatI	GCNGC	5 cut(s)	86, 89, 253, 304, 317
Sau3AI	GATC	4 cut(s)	175, 193, 223, 438
SchI	GAGTC	2 cut(s)	149, 388
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	6 cut(s)	90, 250, 257, 308, 408, 427
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	441
TaqI	TCGA	2 cut(s)	327, 450
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	2 cut(s)	213, 279
Tru9I	TTAA	2 cut(s)	213, 279
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	5 cut(s)	85, 88, 252, 303, 316
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	120, 224
XceI	RCATGY	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.