Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Forward (+)

42650312 .. 42652485

Gene Structure 2174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG223300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGGTGGGTCAGATGCAGAGACAGTGGGTTGACTACACAAAGTCCTTGTTTCTGGAGGGGCTTTTGGATGGACAGTTTCTGCAGCTTCAACAGCTTCAAGATGAGAGCAACCCAGATTTTGTTGTGGAAGTGGTGTCTCTATTCTTTGATGATTCTGAGAAGCTTCTCAATGATATCACCCGAGCTCTAGAGCAGCCAAGTGTAGACTTCAAAAAGATTGGTGCCCATGTTCACCAGTTCAAGGGTAGCAGCTCCAGTGTTGGTGCACAAAGAGTTAAAAATGGCTGCATTGCTTTCCGCAACTTCTGCGAGGAACAAAACATTGAAGGGTGTATCAGATGTCTTCAACAATTAAAGCAAGAGTACTACCTTGTGAAGAACAAGCTTGAAACTCTTTTCGCGATGGAGCAACAAATAGTGGCAGCTGGTGGGTCAATTCCTATGTTGGAATTAAGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

154

Amino Acids

17.56

Weight (kDa)

4.82

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	44 - 127	2.3e-15	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	404
AciI	CCGC	1 cut(s)	301
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	7 cut(s)	92, 101, 214, 244, 329, 350, 392
AluBI	AGCT	7 cut(s)	88, 97, 166, 188, 255, 388, 428
AluI	AGCT	7 cut(s)	88, 97, 166, 188, 255, 388, 428
Alw21I	GWGCWC	2 cut(s)	190, 271
Alw26I	GTCTC	2 cut(s)	16, 144
Alw44I	GTGCAC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	183
ApaLI	GTGCAC	1 cut(s)	267
ApeKI	GCWGC	5 cut(s)	85, 196, 252, 288, 425
AsuHPI	GGTGA	2 cut(s)	172, 227
AvaI	CYCGRG	1 cut(s)	183
BaeGI	GKGCMC	2 cut(s)	229, 271
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	2 cut(s)	190, 271
BbvI	GCAGC	5 cut(s)	97, 208, 264, 275, 437
BccI	CCATC	2 cut(s)	65, 400
BcoDI	GTCTC	2 cut(s)	16, 144
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	83
BisI	GCNGC	5 cut(s)	86, 197, 253, 289, 426
BlsI	GCNGC	5 cut(s)	87, 198, 254, 290, 427
BmcAI	AGTACT	1 cut(s)	368
BmeT110I	CYCGRG	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	226
BmsI	GCATC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	338
BpmI	CTGGAG	2 cut(s)	77, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	238, 258
Bse3DI	GCAATG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	238, 258
BseSI	GKGCMC	2 cut(s)	229, 271
BseXI	GCAGC	5 cut(s)	97, 208, 264, 275, 437
Bsh1236I	CGCG	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	2 cut(s)	190, 271
BsiHKCI	CYCGRG	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	2 cut(s)	16, 144
BsoBI	CYCGRG	1 cut(s)	183
Bsp1286I	GDGCHC	3 cut(s)	190, 229, 271
Bsp68I	TCGCGA	1 cut(s)	404
BspACI	CCGC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	238, 258
Bst4CI	ACNGT	2 cut(s)	27, 78
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	404
BstMAI	GTCTC	2 cut(s)	16, 144
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 309
BstSFI	CTRYAG	1 cut(s)	83
BstSLI	GKGCMC	2 cut(s)	229, 271
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	5 cut(s)	97, 208, 264, 275, 437
BstV2I	GAAGAC	1 cut(s)	338
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	32, 265
BtuMI	TCGCGA	1 cut(s)	404
CaiI	CAGNNNCTG	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	1 cut(s)	230
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	190
FaeI	CATG	1 cut(s)	233
FaiI	YATR	2 cut(s)	231, 446
FatI	CATG	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	5 cut(s)	86, 197, 253, 289, 426
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	5 cut(s)	86, 197, 253, 289, 426
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	5 cut(s)	86, 197, 253, 289, 426
GsuI	CTGGAG	2 cut(s)	77, 241
Hin1II	CATG	1 cut(s)	233
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	2 cut(s)	164, 386
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	2 cut(s)	172, 227
Hpy166II	GTNNAC	4 cut(s)	34, 208, 235, 269
Hpy188I	TCNGA	3 cut(s)	15, 160, 341
Hpy188III	TCNNGA	4 cut(s)	56, 101, 191, 403
Hpy8I	GTNNAC	4 cut(s)	34, 208, 235, 269
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	2 cut(s)	27, 78
HpyCH4V	TGCA	4 cut(s)	19, 85, 269, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 309
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	233
LmnI	GCTCC	2 cut(s)	260, 409
LpnPI	CCDG	5 cut(s)	41, 129, 251, 271, 414
Lsp1109I	GCAGC	5 cut(s)	97, 208, 264, 275, 437
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	1 cut(s)	191
MboII	GAAGA	2 cut(s)	338, 391
MhlI	GDGCHC	3 cut(s)	190, 229, 271
MluCI	AATT	3 cut(s)	353, 438, 452
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	2 cut(s)	52, 307
MseI	TTAA	3 cut(s)	279, 356, 455
MspA1I	CMGCKG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	94, 309
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	226
NruI	TCGCGA	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	5 cut(s)	87, 198, 254, 290, 427
Psp124BI	GAGCTC	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	428
RruI	TCGCGA	1 cut(s)	404
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	3 cut(s)	279, 356, 455
SatI	GCNGC	5 cut(s)	86, 197, 253, 289, 426
ScaI	AGTACT	1 cut(s)	368
SduI	GDGCHC	3 cut(s)	190, 229, 271
SetI	ASST	9 cut(s)	9, 90, 99, 168, 190, 257, 375, 390, 430
SfaNI	GCATC	1 cut(s)	6
SfcI	CTRYAG	1 cut(s)	83
Sse9I	AATT	3 cut(s)	353, 438, 452
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	27, 78
TasI	AATT	3 cut(s)	353, 438, 452
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	3 cut(s)	279, 356, 455
Tru9I	TTAA	3 cut(s)	279, 356, 455
TscAI	CASTG	2 cut(s)	32, 265
TseI	GCWGC	5 cut(s)	85, 196, 252, 288, 425
TspRI	CASTG	2 cut(s)	32, 265
VneI	GTGCAC	1 cut(s)	267
XbaI	TCTAGA	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	191
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.