Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030670.1

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Forward (+)

828 .. 1776

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030670.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgcagagacagtgggttgactacacaaagtccttgtttctggaggggcttttggatggacagtttctgcagcttcaacagcttcaagacgagagcaacccagattttgttgtggaagtggtgtctctattctttgatgattctgagaagcttctcaatgatatcacccgagctctagagcagccaagtgtagacttcaaaaagattggtgcccatgttcaccagttcaagggtagcagctccagtgttggtgcacaaagagttaaaaatggctgcattgctttccgcaacttctgcgaggaacaaaacattgaagggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

106

Amino Acids

12.08

Weight (kDa)

4.74

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	5 cut(s)	77, 86, 199, 229, 314
AluBI	AGCT	5 cut(s)	73, 82, 151, 173, 240
AluI	AGCT	5 cut(s)	73, 82, 151, 173, 240
Alw21I	GWGCWC	2 cut(s)	175, 256
Alw26I	GTCTC	1 cut(s)	129
Alw44I	GTGCAC	1 cut(s)	252
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	168
ApaLI	GTGCAC	1 cut(s)	252
ApeKI	GCWGC	4 cut(s)	70, 181, 237, 273
AsuHPI	GGTGA	2 cut(s)	157, 212
AvaI	CYCGRG	1 cut(s)	168
BaeGI	GKGCMC	2 cut(s)	214, 256
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	175
Bbv12I	GWGCWC	2 cut(s)	175, 256
BbvI	GCAGC	4 cut(s)	82, 193, 249, 260
BccI	CCATC	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	68
BisI	GCNGC	4 cut(s)	71, 182, 238, 274
BlsI	GCNGC	4 cut(s)	72, 183, 239, 275
BmeT110I	CYCGRG	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	211
BpmI	CTGGAG	2 cut(s)	62, 226
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	223, 243
Bse3DI	GCAATG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	223, 243
BseSI	GKGCMC	2 cut(s)	214, 256
BseXI	GCAGC	4 cut(s)	82, 193, 249, 260
BshNI	GGYRCC	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	175, 256
BsiHKCI	CYCGRG	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	168
Bsp1286I	GDGCHC	3 cut(s)	175, 214, 256
BspACI	CCGC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	211
BspMAI	CTGCAG	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	223, 243
Bst4CI	ACNGT	2 cut(s)	12, 63
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 294
BstSFI	CTRYAG	1 cut(s)	68
BstSLI	GKGCMC	2 cut(s)	214, 256
BstV1I	GCAGC	4 cut(s)	82, 193, 249, 260
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	17, 250
CaiI	CAGNNNCTG	1 cut(s)	67
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	8 cut(s)	49, 73, 82, 151, 173, 184, 240, 273
CviKI_1	RGCY	8 cut(s)	49, 73, 82, 151, 173, 184, 240, 273
DdeI	CTNAG	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	173
EcoRV	GATATC	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	175
FaeI	CATG	1 cut(s)	218
FaiI	YATR	1 cut(s)	216
FatI	CATG	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	4 cut(s)	71, 182, 238, 274
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	4 cut(s)	71, 182, 238, 274
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	4 cut(s)	71, 182, 238, 274
GsuI	CTGGAG	2 cut(s)	62, 226
Hin1II	CATG	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	1 cut(s)	140
HphI	GGTGA	2 cut(s)	157, 212
Hpy166II	GTNNAC	4 cut(s)	19, 193, 220, 254
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	3 cut(s)	41, 86, 176
Hpy8I	GTNNAC	4 cut(s)	19, 193, 220, 254
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	2 cut(s)	12, 63
HpyCH4V	TGCA	4 cut(s)	4, 70, 254, 276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 294
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	218
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	4 cut(s)	26, 114, 236, 256
Lsp1109I	GCAGC	4 cut(s)	82, 193, 249, 260
MaeI	CTAG	1 cut(s)	176
MhlI	GDGCHC	3 cut(s)	175, 214, 256
MnlI	CCTC	2 cut(s)	37, 292
MseI	TTAA	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	79, 294
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	72, 183, 239, 275
Psp124BI	GAGCTC	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	72
PstNI	CAGNNNCTG	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	4 cut(s)	71, 182, 238, 274
SduI	GDGCHC	3 cut(s)	175, 214, 256
SetI	ASST	5 cut(s)	75, 84, 153, 175, 242
SfcI	CTRYAG	1 cut(s)	68
SsiI	CCGC	1 cut(s)	286
SspMI	CTAG	1 cut(s)	176
SstI	GAGCTC	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	12, 63
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	17, 250
TseI	GCWGC	4 cut(s)	70, 181, 237, 273
TspRI	CASTG	2 cut(s)	17, 250
VneI	GTGCAC	1 cut(s)	252
XbaI	TCTAGA	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.