Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Forward (+)

44061861 .. 44063725

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGGTGGGTCAGATGCAGAGACAGTGGGTTGACTACACAAAGTCCTTGTTTCTGGAGAAGGGGCTTTTGGATGGCCAGTTTCTGCAGCTTCAACAGCTTCAAGATGAGAGCAACCCAGATTTTGTTGTGGAAGTGGTGTCACTATTCTTTGATGATTCTGAGAAGCTTCTCAATGATATCACCAGAGCTCTAGAGCAGCCAAGTGTAGACTTCAAAAAGATTGGTGCCCATGTTCACCAGTTCAAGGGTAGCAGCTCCAGTGTTGGTGCACAAAGAGTTAAAAATGGCTGCATTGCTTTCCGCAACTTCTGCGAGGAACAAAGCATTGAAGGGTGTATCAGATGTCTTCAACAATTAAAGCAAGAGTACTACCTTGTGAAGAACAAGCTTGAAACTCTTTTCGCGATGGAGCAACAAATTGTGGCAGCTGGTGGCTCAATTCCTATGTTGGAATCAAGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

155

Amino Acids

17.63

Weight (kDa)

4.93

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 128	2.5e-15	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	407
AciI	CCGC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	76
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	7 cut(s)	95, 104, 217, 247, 332, 353, 395
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	7 cut(s)	91, 100, 169, 191, 258, 391, 431
AluI	AGCT	7 cut(s)	91, 100, 169, 191, 258, 391, 431
Alw21I	GWGCWC	2 cut(s)	193, 274
Alw26I	GTCTC	1 cut(s)	16
Alw44I	GTGCAC	1 cut(s)	270
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	76
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	5 cut(s)	88, 199, 255, 291, 428
AsuHPI	GGTGA	2 cut(s)	175, 230
BaeGI	GKGCMC	2 cut(s)	232, 274
BalI	TGGCCA	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	2 cut(s)	193, 274
BbvI	GCAGC	5 cut(s)	100, 211, 267, 278, 440
BccI	CCATC	2 cut(s)	68, 403
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	86
BisI	GCNGC	5 cut(s)	89, 200, 256, 292, 429
BlsI	GCNGC	5 cut(s)	90, 201, 257, 293, 430
BmcAI	AGTACT	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	229
BmsI	GCATC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	341
BpmI	CTGGAG	2 cut(s)	77, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	3 cut(s)	79, 241, 261
Bse3DI	GCAATG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	3 cut(s)	79, 241, 261
BseSI	GKGCMC	2 cut(s)	232, 274
BseXI	GCAGC	5 cut(s)	100, 211, 267, 278, 440
Bsh1236I	CGCG	1 cut(s)	407
BshFI	GGCC	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	2 cut(s)	193, 274
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	78
Bsp1286I	GDGCHC	3 cut(s)	193, 232, 274
Bsp68I	TCGCGA	1 cut(s)	407
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	3 cut(s)	79, 241, 261
Bst4CI	ACNGT	1 cut(s)	27
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	407
BstMAI	GTCTC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 312
BstSFI	CTRYAG	1 cut(s)	86
BstSLI	GKGCMC	2 cut(s)	232, 274
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	5 cut(s)	100, 211, 267, 278, 440
BstV2I	GAAGAC	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	78
BtgZI	GCGATG	1 cut(s)	422
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	32, 268
BtuMI	TCGCGA	1 cut(s)	407
CaiI	CAGNNNCTG	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	1 cut(s)	233
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	191
EcoRV	GATATC	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	1 cut(s)	236
FaiI	YATR	2 cut(s)	234, 449
FatI	CATG	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	5 cut(s)	89, 200, 256, 292, 429
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	5 cut(s)	89, 200, 256, 292, 429
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	5 cut(s)	89, 200, 256, 292, 429
GsuI	CTGGAG	2 cut(s)	77, 244
HaeIII	GGCC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	236
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	2 cut(s)	167, 389
HinfI	GANTC	2 cut(s)	158, 455
HphI	GGTGA	2 cut(s)	175, 230
Hpy166II	GTNNAC	4 cut(s)	34, 211, 238, 272
Hpy188I	TCNGA	3 cut(s)	15, 163, 344
Hpy188III	TCNNGA	4 cut(s)	56, 104, 194, 406
Hpy8I	GTNNAC	4 cut(s)	34, 211, 238, 272
HpyAV	CCTTC	2 cut(s)	55, 326
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	4 cut(s)	19, 88, 272, 294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 312
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	236
LmnI	GCTCC	2 cut(s)	263, 412
LpnPI	CCDG	7 cut(s)	41, 92, 132, 199, 254, 274, 417
Lsp1109I	GCAGC	5 cut(s)	100, 211, 267, 278, 440
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	141
MboII	GAAGA	2 cut(s)	341, 394
MhlI	GDGCHC	3 cut(s)	193, 232, 274
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	3 cut(s)	356, 420, 441
MluNI	TGGCCA	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	1 cut(s)	310
Mox20I	TGGCCA	1 cut(s)	78
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	2 cut(s)	282, 359
Msp20I	TGGCCA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	97, 312
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	141
NruI	TCGCGA	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	158, 455
PkrI	GCNGC	5 cut(s)	90, 201, 257, 293, 430
Psp124BI	GAGCTC	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	431
RruI	TCGCGA	1 cut(s)	407
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SacI	GAGCTC	1 cut(s)	193
SaqAI	TTAA	2 cut(s)	282, 359
SatI	GCNGC	5 cut(s)	89, 200, 256, 292, 429
ScaI	AGTACT	1 cut(s)	371
SduI	GDGCHC	3 cut(s)	193, 232, 274
SetI	ASST	9 cut(s)	9, 93, 102, 171, 193, 260, 378, 393, 433
SfaNI	GCATC	1 cut(s)	6
SfcI	CTRYAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	356, 420, 441
SsiI	CCGC	1 cut(s)	304
SspMI	CTAG	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	27
TasI	AATT	3 cut(s)	356, 420, 441
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	158, 455
Tru1I	TTAA	2 cut(s)	282, 359
Tru9I	TTAA	2 cut(s)	282, 359
TscAI	CASTG	2 cut(s)	32, 268
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	5 cut(s)	88, 199, 255, 291, 428
Tsp45I	GTSAC	1 cut(s)	141
TspRI	CASTG	2 cut(s)	32, 268
VneI	GTGCAC	1 cut(s)	270
XbaI	TCTAGA	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	1 cut(s)	194
ZrmI	AGTACT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.