Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001256

Physical Location & Seq

Genomic Coordinates Reverse (-)

16816317 .. 16819309

Gene Structure 2993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG179600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTTTACCTGGACTTAAGCAGCAGCTCCAGCACCTAATCGAATCCATGGTGAACGAGGGTATCTTAGTTGAACAGCAGTTTGCTCAAGTGCAAGAGTTGAAAACTTCAGACAATCCTAATTTTGTTTCCCAAATCCTCAACGATTTCTGTGATGGCGCAGAGACAAGTATAACTAATTTGAATAAGTTTCTATGTGAAGAACAAGTTGAATTTGACAAGTTAGATACAAGTATTCATCTTTTAAAAGGAAGTAGCTCAAGCATTGGAGCATATCAAATGCGTCTTGCTACTGTTGACCTTGTTAAAGCTGTTGATGAAAAGGACAAGGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009927 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0080036 GO:0080038 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

112

Amino Acids

12.53

Weight (kDa)

4.48

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 103	1.6e-06	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21510
fragaria_vesca	FvH4_3g01870 FvH4_3g01870 FvH4_4g16820 FvH4_6g04970 FvH4_6g18230
malus_domestica	MD04G1212100.v1.1 MD12G1226800.v1.1 MD13G1176300.v1.1 MD14G1019100.v1.1 MD16G1178100.v1.1
prunus_persica	Prupe.1G145400_v2.0.a1 Prupe.6G332500_v2.0.a1
pyrus_communis	pycom04g18820 pycom12g21130 pycom13g15210 pycom16g14960
rosa_chinensis	RchiOBHm_Chr3g0453481 RchiOBHm_Chr3g0472651 RchiOBHm_Chr4g0420371
rosa_laevigata	RLG00000003639 RLG00000007769 RLG00000020144 RLG00000020856 RLG00000024066 RLG00000025510 RLG00000036750
rosa_multiflora	Rmu_sc0000510.1_g000011 Rmu_sc0003510.1_g000016 Rmu_sc0030670.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363010 Rroxscaffold_6G00408750 Rroxscaffold_6G00430450
rosa_rugosa	Rorug01G0409700 Rorug02G0649400 Rorug03G0126900 Rorug04G0163500
rosa_samantha	Rh1CG265000 Rh3AG052200 Rh3AG179600 Rh3BG205500 Rh3CG053000 Rh3CG202600 Rh3DG053800 Rh3DG260200 Rh4BG227800 Rh4DG223300 Rh5AG521500 Rh6CG246900 Rh7DG248500
rosa_wichuraiana	Rw1G024970 Rw2G050090 Rw3G004030 Rw3G016310 Rw4G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	93
AflII	CTTAAG	1 cut(s)	17
AgsI	TTSAA	4 cut(s)	74, 103, 184, 212
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	3 cut(s)	28, 258, 311
AluI	AGCT	3 cut(s)	28, 258, 311
Alw26I	GTCTC	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	22, 25
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	64
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BbvI	GCAGC	2 cut(s)	34, 37
BccI	CCATC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	158
BfrI	CTTAAG	1 cut(s)	17
BisI	GCNGC	2 cut(s)	23, 26
BlsI	GCNGC	2 cut(s)	24, 27
Bme1390I	CCNGG	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	14
BpuEI	CTTGAG	2 cut(s)	72, 244
BsaJI	CCNNGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	34, 37
BsmAI	GTCTC	1 cut(s)	158
Bsp19I	CCATGG	1 cut(s)	48
BspTI	CTTAAG	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	295
BstAFI	CTTAAG	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	67
BstDSI	CCRYGG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	161
BstMAI	GTCTC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	34, 37
BtgI	CCRYGG	1 cut(s)	48
CfoI	GCGC	1 cut(s)	161
CseI	GACGC	1 cut(s)	272
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	4 cut(s)	5, 28, 258, 311
CviKI_1	RGCY	4 cut(s)	5, 28, 258, 311
DdeI	CTNAG	1 cut(s)	67
DraI	TTTAAA	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	52
FaiI	YATR	4 cut(s)	50, 173, 196, 274
FatI	CATG	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	23, 26
Fsp4HI	GCNGC	2 cut(s)	23, 26
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	2 cut(s)	23, 26
GsuI	CTGGAG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	1 cut(s)	44
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	55, 298
Hpy188I	TCNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	55, 298
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	33, 269
LpnPI	CCDG	2 cut(s)	24, 44
Lsp1109I	GCAGC	2 cut(s)	34, 37
MboII	GAAGA	1 cut(s)	212
MluCI	AATT	3 cut(s)	121, 178, 212
MnlI	CCTC	2 cut(s)	52, 149
MseI	TTAA	3 cut(s)	18, 245, 306
MspCI	CTTAAG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	48
NlaIII	CATG	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	24, 27
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
SaqAI	TTAA	3 cut(s)	18, 245, 306
SatI	GCNGC	2 cut(s)	23, 26
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	6 cut(s)	13, 30, 39, 260, 303, 313
SmlI	CTYRAG	3 cut(s)	17, 87, 259
SmoI	CTYRAG	3 cut(s)	17, 87, 259
Sse9I	AATT	3 cut(s)	121, 178, 212
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	42
TasI	AATT	3 cut(s)	121, 178, 212
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	3 cut(s)	18, 245, 306
Tru9I	TTAA	3 cut(s)	18, 245, 306
TseI	GCWGC	2 cut(s)	22, 25
TspDTI	ATGAA	2 cut(s)	227, 333
Vha464I	CTTAAG	1 cut(s)	17
XapI	RAATTY	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.